Wall clock time and date at job start Wed Apr 1 2020 02:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99863 * 2 1 4 4 C 1.39705 * 119.99624 * 179.97438 * 2 1 3 5 5 C 1.39021 * 120.00979 * 5.03739 * 4 2 1 6 6 C 1.38202 * 120.22234 * 180.02562 * 5 4 2 7 7 C 1.38023 * 120.22700 * 0.02562 * 6 5 4 8 8 C 1.39577 * 120.00506 * 359.97438 * 7 6 5 9 9 C 1.47865 * 120.10593 * 179.97438 * 8 7 6 10 10 O 1.21554 * 119.99618 * 204.52141 * 9 8 7 11 11 N 1.34774 * 120.00109 * 24.80395 * 9 8 7 12 12 C 1.47564 * 125.67587 * 5.17874 * 11 9 8 13 13 C 1.55432 * 104.87777 * 156.03511 * 12 11 9 14 14 C 1.53655 * 101.31304 * 35.83159 * 13 12 11 15 15 C 1.53664 * 111.41576 * 87.06105 * 14 13 12 16 16 C 1.55185 * 101.41539 * 155.02664 * 15 14 13 17 17 N 1.47554 * 105.00742 * 324.50561 * 16 15 14 18 18 C 1.36941 * 125.67261 * 203.83136 * 17 16 15 19 19 H 1.07998 * 119.99972 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00252 * 0.03964 * 18 17 16 21 21 N 1.31627 * 119.99767 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00400 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.46951 * 60.00018 * 22 20 18 24 24 H 1.48496 * 109.47217 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46645 * 300.00159 * 22 20 18 26 26 C 1.47405 * 108.65524 * 23.86725 * 17 16 15 27 27 C 1.47408 * 125.67258 * 185.49099 * 11 9 8 28 28 C 1.38648 * 119.99919 * 185.31740 * 4 2 1 29 29 H 1.08996 * 109.46943 * 174.97808 * 1 2 3 30 30 H 1.09000 * 109.47045 * 294.98059 * 1 2 3 31 31 H 1.09008 * 109.46955 * 54.97750 * 1 2 3 32 32 H 1.08998 * 109.46695 * 269.99865 * 3 2 1 33 33 H 1.08999 * 109.46923 * 30.00113 * 3 2 1 34 34 H 1.09005 * 109.46659 * 149.99965 * 3 2 1 35 35 H 1.08001 * 119.88557 * 0.02562 * 5 4 2 36 36 H 1.08001 * 119.88345 * 179.97438 * 6 5 4 37 37 H 1.08001 * 119.99817 * 179.97438 * 7 6 5 38 38 H 1.08996 * 110.33420 * 275.02817 * 12 11 9 39 39 H 1.09006 * 110.33006 * 37.26559 * 12 11 9 40 40 H 1.08998 * 111.25818 * 277.75531 * 13 12 11 41 41 H 1.09008 * 110.94944 * 153.76533 * 13 12 11 42 42 H 1.09000 * 111.03169 * 273.06422 * 15 14 13 43 43 H 1.08996 * 111.03190 * 36.99477 * 15 14 13 44 44 H 1.09001 * 110.32742 * 205.61960 * 16 15 14 45 45 H 1.08997 * 110.42112 * 83.43876 * 16 15 14 46 46 H 0.96996 * 120.00118 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.98600 * 238.53826 * 26 17 16 48 48 H 1.08994 * 110.01859 * 117.24621 * 26 17 16 49 49 H 1.09003 * 109.98298 * 301.45435 * 27 11 9 50 50 H 1.09004 * 109.98538 * 62.72048 * 27 11 9 51 51 H 1.07992 * 120.11744 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1635 -1.2099 0.0005 5 6 1.4725 -2.4117 -0.1046 6 6 2.1590 -3.6111 -0.1040 7 6 3.5351 -3.6241 0.0016 8 6 4.2384 -2.4231 0.1076 9 6 5.7126 -2.4345 0.2214 10 8 6.2889 -1.5009 0.7448 11 7 6.4177 -3.4772 -0.2603 12 6 5.8619 -4.6162 -1.0162 13 6 7.0573 -5.1685 -1.8419 14 6 8.2228 -4.9575 -0.8631 15 6 8.3785 -6.1528 0.0899 16 6 9.8790 -6.0477 0.4719 17 7 10.5521 -5.5703 -0.7514 18 6 11.8737 -5.7541 -1.0591 19 1 12.2722 -5.3637 -1.9838 20 6 12.7013 -6.4425 -0.1827 21 7 12.2154 -6.9191 0.9440 22 14 14.5043 -6.6926 -0.6021 23 1 15.1646 -5.3715 -0.7559 24 1 15.1654 -7.4529 0.4888 25 1 14.6160 -7.4528 -1.8729 26 6 9.5655 -4.8620 -1.5866 27 6 7.8714 -3.6728 -0.1141 28 6 3.5455 -1.2125 0.1118 29 1 -0.3633 -1.0237 -0.0900 30 1 -0.3633 0.4340 0.9315 31 1 -0.3633 0.5898 -0.8417 32 1 2.3792 1.5834 -1.0277 33 1 1.6084 2.0284 0.5138 34 1 3.1500 1.1384 0.5139 35 1 0.3957 -2.4078 -0.1871 36 1 1.6167 -4.5416 -0.1856 37 1 4.0678 -4.5636 0.0021 38 1 5.4864 -5.3774 -0.3324 39 1 5.0672 -4.2777 -1.6811 40 1 7.2052 -4.5938 -2.7562 41 1 6.9208 -6.2267 -2.0653 42 1 7.7424 -6.0387 0.9677 43 1 8.1702 -7.0917 -0.4229 44 1 10.2657 -7.0251 0.7603 45 1 10.0157 -5.3327 1.2831 46 1 12.7935 -7.4004 1.5563 47 1 9.4960 -5.3372 -2.5651 48 1 9.8541 -3.8170 -1.6998 49 1 8.4065 -2.8291 -0.5500 50 1 8.1297 -3.7730 0.9401 51 1 4.0840 -0.2804 0.1978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041804310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:19 Heat of formation + Delta-G solvation = 53.816463 kcal Electronic energy + Delta-G solvation = -30086.726199 eV Core-core repulsion = 26180.669128 eV Total energy + Delta-G solvation = -3906.057071 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.66442 -39.56379 -38.20398 -36.33346 -35.66261 -32.76643 -31.54188 -30.67651 -30.26362 -29.07719 -28.65693 -28.19173 -25.81262 -25.15512 -24.32906 -22.74939 -22.51897 -21.30680 -20.30322 -19.57606 -18.79257 -17.64922 -16.85074 -16.61755 -16.10459 -15.95875 -15.42983 -15.36382 -15.17776 -14.83511 -14.36428 -14.09385 -14.00661 -13.85820 -13.63632 -13.17655 -12.95697 -12.90862 -12.69126 -12.64796 -12.40400 -12.35929 -12.16933 -11.94328 -11.70073 -11.48445 -11.25363 -11.23942 -11.10552 -10.90514 -10.75728 -10.22943 -10.15882 -10.06640 -9.93059 -9.78605 -9.71295 -9.46769 -9.14146 -8.62543 -8.48879 -7.58004 -6.81130 -5.62696 -3.04165 0.82044 1.34593 2.72689 2.88532 3.08483 3.42575 3.46752 3.48068 3.76142 4.34642 4.50922 4.57064 4.59302 4.68731 4.81127 4.91395 4.96778 4.97570 5.00094 5.12914 5.17933 5.26196 5.33735 5.34921 5.41055 5.42103 5.43602 5.50504 5.53785 5.68628 5.81743 5.92080 5.94010 5.98238 6.05191 6.15948 6.20154 6.26916 6.28347 6.32209 6.37783 6.53269 6.57191 6.64446 6.77533 6.85361 6.89457 7.15841 7.53791 7.60875 7.64247 7.87681 8.22872 8.37998 9.24310 9.84978 10.50194 11.41254 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.029798 B = 0.002098 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.423084 B =13340.004985 C =13762.599645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.640 5.640 3 C 0.091 3.909 4 C 0.205 3.795 5 C -0.181 4.181 6 C -0.079 4.079 7 C -0.155 4.155 8 C -0.077 4.077 9 C 0.569 3.431 10 O -0.539 6.539 11 N -0.609 5.609 12 C 0.098 3.902 13 C -0.119 4.119 14 C -0.081 4.081 15 C -0.131 4.131 16 C 0.152 3.848 17 N -0.604 5.604 18 C -0.222 4.222 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.923 5.923 22 Si 0.915 3.085 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.151 3.849 27 C 0.129 3.871 28 C -0.142 4.142 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.137 0.863 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.012 0.988 46 H 0.252 0.748 47 H 0.030 0.970 48 H 0.024 0.976 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.751 8.687 -3.674 28.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.353 5.353 3 C -0.052 4.052 4 C 0.104 3.896 5 C -0.203 4.203 6 C -0.098 4.098 7 C -0.175 4.175 8 C -0.080 4.080 9 C 0.358 3.642 10 O -0.418 6.418 11 N -0.342 5.342 12 C -0.025 4.025 13 C -0.158 4.158 14 C -0.082 4.082 15 C -0.170 4.170 16 C 0.028 3.972 17 N -0.330 5.330 18 C -0.350 4.350 19 H 0.094 0.906 20 C -0.207 4.207 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.025 3.975 27 C 0.007 3.993 28 C -0.165 4.165 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.154 0.846 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.123 0.877 45 H 0.030 0.970 46 H 0.063 0.937 47 H 0.048 0.952 48 H 0.042 0.958 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -26.363 9.340 -3.266 28.159 hybrid contribution 0.870 0.000 -0.139 0.881 sum -25.493 9.340 -3.405 27.363 Atomic orbital electron populations 1.21686 0.79528 1.03003 1.01001 1.46270 1.04930 1.03080 1.80986 1.21658 0.97491 0.84724 1.01357 1.17681 0.90874 0.85991 0.95038 1.20871 0.99792 0.91201 1.08463 1.20841 0.93815 0.97358 0.97761 1.21614 0.94579 0.97867 1.03453 1.19630 0.92452 0.93937 1.01998 1.18002 0.86557 0.81169 0.78500 1.90777 1.71494 1.34639 1.44845 1.48555 1.09362 1.21764 1.54569 1.22762 0.97146 0.88190 0.94361 1.22746 0.93411 1.01877 0.97722 1.21540 0.95619 0.95003 0.96045 1.22919 1.00922 0.95727 0.97412 1.21992 0.85540 1.01882 0.87816 1.44619 1.05611 1.63581 1.19219 1.19024 0.83380 1.29389 1.03209 0.90556 1.24786 0.98400 1.00874 0.96670 1.69791 1.33982 1.42376 1.10971 0.86150 0.84500 0.77722 0.77109 1.21242 1.21608 1.21203 1.21089 0.86944 0.95693 0.93771 1.21891 0.78820 0.97366 1.01219 1.20714 0.91949 0.98164 1.05643 0.90391 0.92985 0.92660 0.93269 0.91520 0.90929 0.85651 0.85504 0.84558 0.90877 0.90254 0.90600 0.89510 0.92290 0.91657 0.87663 0.97006 0.93710 0.95245 0.95827 0.91084 0.90867 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.62 59.85 0.64 1.14 16 2 N -0.64 -5.40 3.41 -187.58 -0.64 -6.04 16 3 C 0.09 0.65 10.35 59.85 0.62 1.27 16 4 C 0.20 2.12 6.54 -83.83 -0.55 1.57 16 5 C -0.18 -1.60 9.31 -39.30 -0.37 -1.97 16 6 C -0.08 -0.69 10.02 -39.67 -0.40 -1.09 16 7 C -0.15 -1.64 8.07 -39.16 -0.32 -1.96 16 8 C -0.08 -1.01 5.67 -104.99 -0.60 -1.60 16 9 C 0.57 9.19 7.65 -12.32 -0.09 9.10 16 10 O -0.54 -10.64 16.94 5.32 0.09 -10.55 16 11 N -0.61 -9.13 3.34 -171.79 -0.57 -9.71 16 12 C 0.10 1.13 4.95 -2.17 -0.01 1.12 16 13 C -0.12 -1.52 5.94 -25.10 -0.15 -1.67 16 14 C -0.08 -1.35 0.61 -154.02 -0.09 -1.45 16 15 C -0.13 -2.38 5.85 -25.23 -0.15 -2.53 16 16 C 0.15 3.66 5.85 -2.31 -0.01 3.65 16 17 N -0.60 -15.37 3.41 -170.41 -0.58 -15.95 16 18 C -0.22 -6.18 10.28 -15.06 -0.15 -6.34 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 21 N -0.92 -26.97 10.09 55.49 0.56 -26.41 16 22 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.15 3.10 6.51 -3.64 -0.02 3.08 16 27 C 0.13 2.21 6.03 -3.64 -0.02 2.19 16 28 C -0.14 -1.75 8.79 -38.96 -0.34 -2.10 16 29 H 0.08 0.37 5.30 -51.93 -0.28 0.09 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.25 8.14 -51.92 -0.42 -0.17 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.35 8.07 -51.93 -0.42 -0.06 16 34 H 0.07 0.58 6.00 -51.93 -0.31 0.27 16 35 H 0.13 0.81 5.72 -52.49 -0.30 0.51 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.14 1.30 4.59 -52.49 -0.24 1.05 16 38 H 0.07 0.75 6.83 -51.93 -0.35 0.39 16 39 H 0.08 0.78 6.82 -51.93 -0.35 0.43 16 40 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 41 H 0.09 1.00 7.78 -51.92 -0.40 0.59 16 42 H 0.06 0.98 7.94 -51.93 -0.41 0.57 16 43 H 0.06 1.13 7.82 -51.93 -0.41 0.73 16 44 H 0.11 2.85 5.89 -51.93 -0.31 2.54 16 45 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 47 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 48 H 0.02 0.50 7.41 -51.93 -0.39 0.11 16 49 H 0.07 1.31 7.44 -51.93 -0.39 0.92 16 50 H 0.07 1.38 7.78 -51.93 -0.40 0.98 16 51 H 0.13 1.69 5.81 -52.49 -0.31 1.38 16 LS Contribution 390.49 15.07 5.88 5.88 Total: -1.00 -33.54 390.49 -10.15 -43.69 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.75 Total: -0.09 kcal Atomic # 6 Polarization: 4.09 SS G_CDS: -2.11 Total: 1.98 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: -1.23 Total: -58.10 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.54 -10.15 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041804310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.507 kcal (2) G-P(sol) polarization free energy of solvation -33.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds