Wall clock time and date at job start Wed Apr 1 2020 02:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46504 * 119.99863 * 2 1 4 4 C 1.39705 * 119.99624 * 179.97438 * 2 1 3 5 5 C 1.39021 * 120.00979 * 5.03739 * 4 2 1 6 6 C 1.38202 * 120.22234 * 180.02562 * 5 4 2 7 7 C 1.38023 * 120.22700 * 0.02562 * 6 5 4 8 8 C 1.39577 * 120.00506 * 359.97438 * 7 6 5 9 9 C 1.47865 * 120.10593 * 179.97438 * 8 7 6 10 10 O 1.21554 * 119.99618 * 204.52141 * 9 8 7 11 11 N 1.34774 * 120.00109 * 24.80395 * 9 8 7 12 12 C 1.47564 * 125.67587 * 5.17874 * 11 9 8 13 13 C 1.55432 * 104.87777 * 156.03511 * 12 11 9 14 14 C 1.53655 * 101.31304 * 35.83159 * 13 12 11 15 15 C 1.53664 * 111.41576 * 87.06105 * 14 13 12 16 16 C 1.55185 * 101.41539 * 155.02664 * 15 14 13 17 17 N 1.47554 * 105.00742 * 324.50561 * 16 15 14 18 18 C 1.36941 * 125.67261 * 203.83136 * 17 16 15 19 19 H 1.07998 * 119.99972 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00252 * 0.03964 * 18 17 16 21 21 N 1.31627 * 119.99767 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00400 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.46951 * 60.00018 * 22 20 18 24 24 H 1.48496 * 109.47217 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46645 * 300.00159 * 22 20 18 26 26 C 1.47405 * 108.65524 * 23.86725 * 17 16 15 27 27 C 1.47408 * 125.67258 * 185.49099 * 11 9 8 28 28 C 1.38648 * 119.99919 * 185.31740 * 4 2 1 29 29 H 1.08996 * 109.46943 * 174.97808 * 1 2 3 30 30 H 1.09000 * 109.47045 * 294.98059 * 1 2 3 31 31 H 1.09008 * 109.46955 * 54.97750 * 1 2 3 32 32 H 1.08998 * 109.46695 * 269.99865 * 3 2 1 33 33 H 1.08999 * 109.46923 * 30.00113 * 3 2 1 34 34 H 1.09005 * 109.46659 * 149.99965 * 3 2 1 35 35 H 1.08001 * 119.88557 * 0.02562 * 5 4 2 36 36 H 1.08001 * 119.88345 * 179.97438 * 6 5 4 37 37 H 1.08001 * 119.99817 * 179.97438 * 7 6 5 38 38 H 1.08996 * 110.33420 * 275.02817 * 12 11 9 39 39 H 1.09006 * 110.33006 * 37.26559 * 12 11 9 40 40 H 1.08998 * 111.25818 * 277.75531 * 13 12 11 41 41 H 1.09008 * 110.94944 * 153.76533 * 13 12 11 42 42 H 1.09000 * 111.03169 * 273.06422 * 15 14 13 43 43 H 1.08996 * 111.03190 * 36.99477 * 15 14 13 44 44 H 1.09001 * 110.32742 * 205.61960 * 16 15 14 45 45 H 1.08997 * 110.42112 * 83.43876 * 16 15 14 46 46 H 0.96996 * 120.00118 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.98600 * 238.53826 * 26 17 16 48 48 H 1.08994 * 110.01859 * 117.24621 * 26 17 16 49 49 H 1.09003 * 109.98298 * 301.45435 * 27 11 9 50 50 H 1.09004 * 109.98538 * 62.72048 * 27 11 9 51 51 H 1.07992 * 120.11744 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1635 -1.2099 0.0005 5 6 1.4725 -2.4117 -0.1046 6 6 2.1590 -3.6111 -0.1040 7 6 3.5351 -3.6241 0.0016 8 6 4.2384 -2.4231 0.1076 9 6 5.7126 -2.4345 0.2214 10 8 6.2889 -1.5009 0.7448 11 7 6.4177 -3.4772 -0.2603 12 6 5.8619 -4.6162 -1.0162 13 6 7.0573 -5.1685 -1.8419 14 6 8.2228 -4.9575 -0.8631 15 6 8.3785 -6.1528 0.0899 16 6 9.8790 -6.0477 0.4719 17 7 10.5521 -5.5703 -0.7514 18 6 11.8737 -5.7541 -1.0591 19 1 12.2722 -5.3637 -1.9838 20 6 12.7013 -6.4425 -0.1827 21 7 12.2154 -6.9191 0.9440 22 14 14.5043 -6.6926 -0.6021 23 1 15.1646 -5.3715 -0.7559 24 1 15.1654 -7.4529 0.4888 25 1 14.6160 -7.4528 -1.8729 26 6 9.5655 -4.8620 -1.5866 27 6 7.8714 -3.6728 -0.1141 28 6 3.5455 -1.2125 0.1118 29 1 -0.3633 -1.0237 -0.0900 30 1 -0.3633 0.4340 0.9315 31 1 -0.3633 0.5898 -0.8417 32 1 2.3792 1.5834 -1.0277 33 1 1.6084 2.0284 0.5138 34 1 3.1500 1.1384 0.5139 35 1 0.3957 -2.4078 -0.1871 36 1 1.6167 -4.5416 -0.1856 37 1 4.0678 -4.5636 0.0021 38 1 5.4864 -5.3774 -0.3324 39 1 5.0672 -4.2777 -1.6811 40 1 7.2052 -4.5938 -2.7562 41 1 6.9208 -6.2267 -2.0653 42 1 7.7424 -6.0387 0.9677 43 1 8.1702 -7.0917 -0.4229 44 1 10.2657 -7.0251 0.7603 45 1 10.0157 -5.3327 1.2831 46 1 12.7935 -7.4004 1.5563 47 1 9.4960 -5.3372 -2.5651 48 1 9.8541 -3.8170 -1.6998 49 1 8.4065 -2.8291 -0.5500 50 1 8.1297 -3.7730 0.9401 51 1 4.0840 -0.2804 0.1978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041804310.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:04:18 Heat of formation + Delta-G solvation = 33.628051 kcal Electronic energy + Delta-G solvation = -30087.601635 eV Core-core repulsion = 26180.669128 eV Total energy + Delta-G solvation = -3906.932507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.80604 -40.55837 -39.46698 -37.31451 -36.96294 -34.53557 -32.57283 -31.97964 -31.14469 -30.66762 -29.71713 -29.13787 -27.41937 -26.02402 -25.71408 -24.03535 -23.44524 -22.19798 -22.06015 -20.60823 -20.19822 -18.89739 -18.40601 -17.67154 -17.13044 -16.94633 -16.81319 -16.30499 -16.09714 -15.95652 -15.93902 -15.58039 -15.11197 -14.82868 -14.63941 -14.54637 -14.12907 -13.91386 -13.73511 -13.51230 -13.47930 -13.38491 -13.31632 -13.08896 -12.91164 -12.90049 -12.83376 -12.68067 -12.46219 -12.18549 -12.05432 -11.93957 -11.80088 -11.51064 -11.43087 -11.18590 -11.03720 -10.78792 -10.71948 -10.00057 -9.68538 -8.87905 -8.24288 -7.76385 -5.20617 -0.05045 0.60537 1.46131 1.49619 1.55839 1.75614 1.85937 2.25081 2.50209 2.92558 3.28102 3.37847 3.53387 3.64304 3.70312 3.78423 3.93434 4.00995 4.19120 4.24733 4.28721 4.31735 4.43146 4.49269 4.51848 4.54012 4.59472 4.63026 4.69905 4.72769 4.76524 4.77963 4.84102 4.89834 4.93390 4.93869 5.02843 5.03550 5.07471 5.20014 5.24585 5.29654 5.36359 5.46652 5.47418 5.56598 5.64528 5.82791 5.83585 6.29385 6.31791 6.43896 6.50400 7.01347 7.11546 7.78826 8.43128 9.25309 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.029798 B = 0.002098 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.423084 B =13340.004985 C =13762.599645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.646 5.646 3 C 0.088 3.912 4 C 0.199 3.801 5 C -0.174 4.174 6 C -0.070 4.070 7 C -0.155 4.155 8 C -0.097 4.097 9 C 0.562 3.438 10 O -0.593 6.593 11 N -0.607 5.607 12 C 0.098 3.902 13 C -0.109 4.109 14 C -0.070 4.070 15 C -0.110 4.110 16 C 0.154 3.846 17 N -0.626 5.626 18 C -0.238 4.238 19 H 0.080 0.920 20 C -0.069 4.069 21 N -0.949 5.949 22 Si 0.981 3.019 23 H -0.282 1.282 24 H -0.294 1.294 25 H -0.273 1.273 26 C 0.147 3.853 27 C 0.134 3.866 28 C -0.166 4.166 29 H 0.090 0.910 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.151 0.849 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.074 0.926 45 H -0.025 1.025 46 H 0.246 0.754 47 H 0.045 0.955 48 H 0.013 0.987 49 H 0.049 0.951 50 H 0.047 0.953 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.567 7.353 -5.490 31.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.358 5.358 3 C -0.055 4.055 4 C 0.097 3.903 5 C -0.196 4.196 6 C -0.088 4.088 7 C -0.175 4.175 8 C -0.101 4.101 9 C 0.353 3.647 10 O -0.475 6.475 11 N -0.339 5.339 12 C -0.023 4.023 13 C -0.147 4.147 14 C -0.071 4.071 15 C -0.149 4.149 16 C 0.029 3.971 17 N -0.352 5.352 18 C -0.367 4.367 19 H 0.098 0.902 20 C -0.262 4.262 21 N -0.599 5.599 22 Si 0.809 3.191 23 H -0.209 1.209 24 H -0.220 1.220 25 H -0.199 1.199 26 C 0.022 3.978 27 C 0.011 3.989 28 C -0.189 4.189 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.173 0.827 36 H 0.182 0.818 37 H 0.168 0.832 38 H 0.116 0.884 39 H 0.124 0.876 40 H 0.102 0.898 41 H 0.131 0.869 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.092 0.908 45 H -0.007 1.007 46 H 0.056 0.944 47 H 0.063 0.937 48 H 0.031 0.969 49 H 0.067 0.933 50 H 0.065 0.935 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -30.232 8.007 -5.126 31.692 hybrid contribution 2.000 0.519 0.433 2.111 sum -28.233 8.526 -4.694 29.863 Atomic orbital electron populations 1.21891 0.77579 1.04163 1.01995 1.46534 1.06188 1.02686 1.80344 1.21704 0.97186 0.85081 1.01557 1.17841 0.90178 0.87519 0.94784 1.21282 1.01302 0.90476 1.06561 1.21254 0.93009 0.98792 0.95782 1.21774 0.95566 0.97043 1.03108 1.19463 0.90281 0.95519 1.04794 1.18660 0.88050 0.80458 0.77483 1.90734 1.72787 1.36696 1.47273 1.48600 1.08175 1.22598 1.54515 1.23062 0.97134 0.87335 0.94745 1.22778 0.91196 1.03842 0.96873 1.21369 0.95414 0.93830 0.96463 1.22733 0.96444 0.97152 0.98550 1.21781 0.89604 0.98878 0.86875 1.44937 1.05878 1.64208 1.20194 1.19419 0.84977 1.28977 1.03353 0.90191 1.25644 1.02578 1.01165 0.96788 1.70057 1.34965 1.43089 1.11786 0.85119 0.79450 0.77555 0.77010 1.20888 1.21977 1.19891 1.21277 0.87822 0.94526 0.94215 1.21617 0.80697 0.97064 0.99554 1.20669 0.93216 0.97396 1.07629 0.89164 0.92155 0.91447 0.93034 0.89526 0.92698 0.82704 0.81831 0.83193 0.88397 0.87630 0.89772 0.86889 0.90528 0.89705 0.90838 1.00688 0.94393 0.93719 0.96930 0.93299 0.93450 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.62 127.77 1.36 2.04 16 2 N -0.65 -9.81 3.41 -747.37 -2.55 -12.35 16 3 C 0.09 1.23 10.35 127.77 1.32 2.55 16 4 C 0.20 3.78 6.54 38.17 0.25 4.03 16 5 C -0.17 -2.41 9.31 22.45 0.21 -2.20 16 6 C -0.07 -0.91 10.02 22.21 0.22 -0.69 16 7 C -0.15 -2.80 8.07 22.54 0.18 -2.62 16 8 C -0.10 -2.51 5.67 -20.10 -0.11 -2.62 16 9 C 0.56 18.71 7.65 86.79 0.66 19.37 16 10 O -0.59 -25.17 16.94 -3.89 -0.07 -25.23 16 11 N -0.61 -17.95 3.34 -815.71 -2.72 -20.67 16 12 C 0.10 1.92 4.95 87.01 0.43 2.35 16 13 C -0.11 -2.39 5.94 31.65 0.19 -2.20 16 14 C -0.07 -2.27 0.61 -51.86 -0.03 -2.30 16 15 C -0.11 -3.90 5.85 31.57 0.18 -3.72 16 16 C 0.15 7.68 5.85 86.93 0.51 8.19 16 17 N -0.63 -32.73 3.41 -693.07 -2.36 -35.09 16 18 C -0.24 -13.61 10.28 84.03 0.86 -12.74 16 19 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 20 C -0.07 -4.01 5.49 84.86 0.47 -3.55 16 21 N -0.95 -57.61 10.09 21.65 0.22 -57.39 16 22 Si 0.98 46.53 29.55 68.60 2.03 48.56 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 C 0.15 6.04 6.51 86.14 0.56 6.60 16 27 C 0.13 4.75 6.03 86.14 0.52 5.27 16 28 C -0.17 -4.16 8.79 22.67 0.20 -3.96 16 29 H 0.09 0.48 5.30 -2.39 -0.01 0.46 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.83 8.07 -2.39 -0.02 0.81 16 34 H 0.05 0.96 6.00 -2.38 -0.01 0.95 16 35 H 0.16 1.20 5.72 -2.91 -0.02 1.18 16 36 H 0.16 0.96 8.06 -2.91 -0.02 0.94 16 37 H 0.15 2.20 4.59 -2.91 -0.01 2.19 16 38 H 0.10 1.51 6.83 -2.39 -0.02 1.50 16 39 H 0.11 1.61 6.82 -2.38 -0.02 1.60 16 40 H 0.08 1.77 8.08 -2.39 -0.02 1.75 16 41 H 0.11 1.99 7.78 -2.38 -0.02 1.98 16 42 H 0.08 2.45 7.94 -2.39 -0.02 2.43 16 43 H 0.08 2.71 7.82 -2.39 -0.02 2.69 16 44 H 0.07 4.16 5.89 -2.39 -0.01 4.14 16 45 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 46 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 47 H 0.04 1.72 7.86 -2.39 -0.02 1.70 16 48 H 0.01 0.55 7.41 -2.39 -0.02 0.53 16 49 H 0.05 1.93 7.44 -2.39 -0.02 1.91 16 50 H 0.05 1.91 7.78 -2.39 -0.02 1.89 16 51 H 0.11 3.17 5.81 -2.91 -0.02 3.15 16 Total: -1.00 -79.21 390.49 3.46 -75.75 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.94 Total: 12.62 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 7.98 Total: 13.81 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -7.42 Total: -125.51 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.07 Total: -25.23 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -79.21 3.46 -75.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041804310.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.376 kcal (2) G-P(sol) polarization free energy of solvation -79.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds