Wall clock time and date at job start Wed Apr 1 2020 02:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99618 * 2 1 4 4 C 1.39671 * 120.00150 * 179.97438 * 2 1 3 5 5 C 1.38912 * 120.07598 * 0.02562 * 4 2 1 6 6 C 1.38098 * 119.92802 * 180.02562 * 5 4 2 7 7 C 1.38286 * 120.07387 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.92812 * 180.02562 * 7 6 5 9 9 H 1.08998 * 115.54660 * 334.32454 * 8 7 6 10 10 C 1.53001 * 117.51768 * 188.63273 * 8 7 6 11 11 C 1.52998 * 117.50222 * 119.99890 * 8 7 6 12 12 H 1.08994 * 117.49691 * 0.02562 * 11 8 7 13 13 C 1.50692 * 117.50068 * 215.00327 * 11 8 7 14 14 O 1.21282 * 120.00259 * 359.97438 * 13 11 8 15 15 N 1.34773 * 120.00305 * 179.97438 * 13 11 8 16 16 C 1.46500 * 119.99896 * 0.02562 * 15 13 11 17 17 C 1.46503 * 120.00289 * 179.97438 * 15 13 11 18 18 C 1.53495 * 114.20729 * 120.00311 * 17 15 13 19 19 N 1.47068 * 87.98832 * 87.71725 * 18 17 15 20 20 C 1.36931 * 136.05648 * 207.08648 * 19 18 17 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72253 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99751 * 24 22 20 26 26 H 1.48490 * 109.47071 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00028 * 24 22 20 28 28 C 1.47071 * 87.88415 * 27.34050 * 19 18 17 29 29 C 1.38291 * 120.15125 * 0.27739 * 7 6 5 30 30 C 1.38111 * 120.06751 * 359.45162 * 29 7 6 31 31 H 1.09004 * 109.47266 * 239.99806 * 1 2 3 32 32 H 1.08993 * 109.47697 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.47128 * 120.00540 * 1 2 3 34 34 H 1.08994 * 109.46971 * 269.99638 * 3 2 1 35 35 H 1.08995 * 109.46921 * 30.00481 * 3 2 1 36 36 H 1.09000 * 109.46929 * 149.99899 * 3 2 1 37 37 H 1.08001 * 120.03761 * 0.03541 * 5 4 2 38 38 H 1.07998 * 119.96781 * 180.02562 * 6 5 4 39 39 H 1.09004 * 117.49545 * 145.03063 * 10 8 7 40 40 H 1.08997 * 117.50341 * 0.02562 * 10 8 7 41 41 H 1.09004 * 109.46838 * 269.99834 * 16 15 13 42 42 H 1.09005 * 109.47368 * 29.99707 * 16 15 13 43 43 H 1.09004 * 109.47517 * 149.99714 * 16 15 13 44 44 H 1.08999 * 113.28076 * 346.93405 * 17 15 13 45 45 H 1.09004 * 113.46737 * 332.93771 * 18 17 15 46 46 H 1.09003 * 113.51807 * 202.50877 * 18 17 15 47 47 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 48 48 H 1.08998 * 113.46338 * 87.43811 * 28 19 18 49 49 H 1.08993 * 113.47050 * 217.87717 * 28 19 18 50 50 H 1.07996 * 119.96419 * 179.70596 * 29 7 6 51 51 H 1.08004 * 120.03284 * 180.27618 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1634 -1.2096 0.0005 5 6 1.4705 -2.4135 0.0005 6 6 2.1641 -3.6077 0.0016 7 6 3.5469 -3.6058 0.0021 8 6 4.3005 -4.9109 0.0027 9 1 3.7679 -5.7611 0.4288 10 6 5.8157 -4.8522 0.2070 11 6 5.2419 -5.1837 -1.1721 12 1 5.3165 -4.4191 -1.9453 13 6 5.3617 -6.6072 -1.6518 14 8 4.7251 -7.4856 -1.1093 15 7 6.1761 -6.9045 -2.6836 16 6 6.9455 -5.8436 -3.3386 17 6 6.2930 -8.2885 -3.1495 18 6 5.8851 -8.4959 -4.6147 19 7 7.2695 -8.1731 -4.9917 20 6 7.8949 -7.6461 -6.0900 21 1 7.3160 -7.3602 -6.9558 22 6 9.2723 -7.4735 -6.0881 23 7 9.9776 -7.8215 -5.0328 24 14 10.1246 -6.7474 -7.5834 25 1 9.5927 -5.3856 -7.8436 26 1 11.5857 -6.6688 -7.3307 27 1 9.8728 -7.6112 -8.7647 28 6 7.6872 -8.6715 -3.6726 29 6 4.2400 -2.4091 0.0074 30 6 3.5525 -1.2113 0.0007 31 1 -0.3634 -0.5139 0.8900 32 1 -0.3634 1.0276 0.0005 33 1 -0.3633 -0.5139 -0.8899 34 1 2.3791 1.5834 -1.0276 35 1 1.6084 2.0283 0.5139 36 1 3.1499 1.1385 0.5139 37 1 0.3905 -2.4157 -0.0005 38 1 1.6260 -4.5441 0.0012 39 1 6.2798 -5.6639 0.7673 40 1 6.2678 -3.8696 0.3414 41 1 6.3614 -5.4241 -4.1578 42 1 7.1725 -5.0600 -2.6157 43 1 7.8750 -6.2574 -3.7298 44 1 5.8624 -9.0134 -2.4588 45 1 5.1571 -7.7665 -4.9700 46 1 5.6003 -9.5224 -4.8458 47 1 10.9402 -7.7012 -5.0317 48 1 7.8779 -9.7445 -3.6545 49 1 8.4946 -8.0918 -3.2253 50 1 5.3199 -2.4113 0.0126 51 1 4.0943 -0.2771 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043424935.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:28 Heat of formation + Delta-G solvation = 102.462224 kcal Electronic energy + Delta-G solvation = -29518.320568 eV Core-core repulsion = 25614.372935 eV Total energy + Delta-G solvation = -3903.947633 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.29571 -39.60769 -38.20288 -36.97128 -35.26647 -33.92227 -32.07472 -31.28989 -29.99853 -28.46814 -27.96369 -26.08414 -25.53528 -24.58804 -24.44554 -22.90165 -22.43871 -21.95418 -20.18512 -19.47670 -18.11669 -17.77727 -17.08977 -16.57935 -16.00984 -15.54343 -15.40134 -15.30364 -14.97672 -14.83503 -14.54589 -14.13592 -13.78955 -13.71679 -13.57932 -13.10070 -12.98265 -12.83873 -12.72672 -12.59037 -12.44624 -12.31287 -12.22740 -11.91656 -11.63265 -11.41261 -11.27999 -11.08860 -10.91128 -10.87146 -10.73119 -10.64798 -10.34409 -10.06529 -9.88777 -9.61573 -9.42551 -9.36322 -9.00522 -8.83328 -7.89169 -7.39171 -6.92163 -5.81133 -3.13628 1.35920 1.41888 2.84682 2.86577 3.36180 3.41658 3.42275 3.44159 3.70671 4.16705 4.42388 4.60985 4.61409 4.66327 4.83905 4.87427 4.91713 4.97061 5.00571 5.14203 5.22396 5.25376 5.30535 5.31144 5.33442 5.36259 5.45355 5.54706 5.56312 5.63106 5.68863 5.90060 5.96230 6.01369 6.04906 6.16938 6.19712 6.24100 6.32295 6.37588 6.50181 6.60026 6.69688 6.72521 6.76686 6.98736 7.03537 7.16366 7.27183 7.32524 7.52362 7.91399 8.06472 8.66411 8.99642 9.65454 10.59917 11.35579 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.002219 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.955253 B =12615.936939 C =13606.132144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.642 5.642 3 C 0.094 3.906 4 C 0.206 3.794 5 C -0.192 4.192 6 C -0.061 4.061 7 C -0.104 4.104 8 C -0.076 4.076 9 H 0.122 0.878 10 C -0.147 4.147 11 C -0.173 4.173 12 H 0.123 0.877 13 C 0.540 3.460 14 O -0.557 6.557 15 N -0.571 5.571 16 C 0.081 3.919 17 C 0.083 3.917 18 C 0.105 3.895 19 N -0.607 5.607 20 C -0.214 4.214 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.910 3.090 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.145 3.855 29 C -0.071 4.071 30 C -0.194 4.194 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.112 0.888 44 H 0.098 0.902 45 H 0.041 0.959 46 H 0.042 0.958 47 H 0.255 0.745 48 H 0.037 0.963 49 H 0.078 0.922 50 H 0.124 0.876 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.123 16.374 13.259 25.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.354 5.354 3 C -0.049 4.049 4 C 0.106 3.894 5 C -0.214 4.214 6 C -0.080 4.080 7 C -0.106 4.106 8 C -0.094 4.094 9 H 0.140 0.860 10 C -0.185 4.185 11 C -0.194 4.194 12 H 0.141 0.859 13 C 0.329 3.671 14 O -0.437 6.437 15 N -0.300 5.300 16 C -0.062 4.062 17 C -0.022 4.022 18 C -0.023 4.023 19 N -0.333 5.333 20 C -0.342 4.342 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.741 3.259 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.213 1.213 28 C 0.018 3.982 29 C -0.089 4.089 30 C -0.216 4.216 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.130 0.870 44 H 0.116 0.884 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.055 0.945 49 H 0.096 0.904 50 H 0.141 0.859 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.239 16.223 13.302 25.930 hybrid contribution 0.578 0.349 -1.207 1.383 sum -14.661 16.572 12.096 25.216 Atomic orbital electron populations 1.21569 0.79631 1.02197 1.01193 1.46284 1.04878 1.03183 1.81091 1.21641 0.97315 0.84859 1.01112 1.17814 0.91225 0.85555 0.94839 1.20591 0.99429 0.90968 1.10452 1.20741 0.93333 0.97418 0.96479 1.18914 0.93211 0.92811 1.05680 1.20951 0.91513 0.96629 1.00348 0.85989 1.23081 0.95768 1.03310 0.96308 1.22359 1.07384 0.96272 0.93418 0.85925 1.19573 0.78919 0.88994 0.79660 1.90624 1.46213 1.49078 1.57783 1.47244 1.42562 1.08440 1.31748 1.21913 0.98964 0.89228 0.96051 1.22692 1.01338 0.82583 0.95610 1.22841 0.89769 0.97812 0.91848 1.45736 1.01553 1.70864 1.15161 1.18859 0.89861 1.33012 0.92431 0.90296 1.24758 0.95913 1.01817 0.97884 1.69804 1.05986 1.52599 1.28337 0.86227 0.78635 0.78948 0.82126 1.21071 1.21584 1.21280 1.22526 0.93336 0.97062 0.85247 1.20826 0.99675 0.91274 0.97156 1.20625 0.92000 0.98441 1.10518 0.92902 0.91080 0.92830 0.93491 0.91740 0.91308 0.86259 0.85920 0.87944 0.87757 0.93353 0.92909 0.86951 0.88447 0.94074 0.94035 0.93529 0.94540 0.90357 0.85865 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.58 9.40 59.85 0.56 1.15 16 2 N -0.64 -5.30 3.41 -187.56 -0.64 -5.94 16 3 C 0.09 0.56 10.16 59.85 0.61 1.17 16 4 C 0.21 2.12 6.55 -83.79 -0.55 1.57 16 5 C -0.19 -2.00 9.31 -39.38 -0.37 -2.37 16 6 C -0.06 -0.69 9.73 -39.62 -0.39 -1.07 16 7 C -0.10 -1.23 5.61 -104.58 -0.59 -1.82 16 8 C -0.08 -0.97 5.55 -91.77 -0.51 -1.48 16 9 H 0.12 1.68 7.67 -51.93 -0.40 1.28 16 10 C -0.15 -1.74 9.56 -26.73 -0.26 -2.00 16 11 C -0.17 -2.45 4.43 -91.77 -0.41 -2.86 16 12 H 0.12 1.65 7.26 -51.93 -0.38 1.27 16 13 C 0.54 9.74 7.46 -10.99 -0.08 9.65 16 14 O -0.56 -11.42 15.77 5.56 0.09 -11.33 16 15 N -0.57 -10.86 3.12 -173.55 -0.54 -11.40 16 16 C 0.08 1.50 9.11 59.85 0.55 2.05 16 17 C 0.08 1.68 4.67 -67.67 -0.32 1.37 16 18 C 0.10 2.22 8.31 -8.50 -0.07 2.15 16 19 N -0.61 -14.97 2.49 -184.60 -0.46 -15.43 16 20 C -0.21 -5.73 10.37 -15.06 -0.16 -5.88 16 21 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -25.95 11.50 55.49 0.64 -25.31 16 24 Si 0.91 21.41 29.55 -169.99 -5.02 16.39 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 28 C 0.14 3.34 6.45 -8.36 -0.05 3.29 16 29 C -0.07 -0.76 9.29 -39.61 -0.37 -1.13 16 30 C -0.19 -1.97 9.21 -39.38 -0.36 -2.33 16 31 H 0.05 0.30 7.95 -51.93 -0.41 -0.11 16 32 H 0.07 0.29 7.79 -51.93 -0.40 -0.11 16 33 H 0.05 0.33 7.95 -51.93 -0.41 -0.09 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.28 7.92 -51.93 -0.41 -0.14 16 36 H 0.07 0.39 6.20 -51.93 -0.32 0.07 16 37 H 0.12 1.04 6.73 -52.49 -0.35 0.69 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.10 1.01 6.17 -51.93 -0.32 0.69 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.82 6.64 -51.93 -0.34 0.47 16 43 H 0.11 2.53 5.41 -51.93 -0.28 2.25 16 44 H 0.10 1.93 7.29 -51.93 -0.38 1.55 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 48 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 49 H 0.08 1.97 6.25 -51.93 -0.32 1.65 16 50 H 0.12 1.15 6.01 -52.49 -0.32 0.83 16 51 H 0.12 1.01 6.14 -52.48 -0.32 0.69 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -31.51 404.26 -10.58 -42.09 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -7.88 Total: 3.67 kcal Atomic # 6 Polarization: 4.03 SS G_CDS: -2.85 Total: 1.18 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -1.00 Total: -58.08 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.51 -10.58 -42.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043424935.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.549 kcal (2) G-P(sol) polarization free energy of solvation -31.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds