Wall clock time and date at job start Wed Apr 1 2020 02:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99618 * 2 1 4 4 C 1.39671 * 120.00150 * 179.97438 * 2 1 3 5 5 C 1.38912 * 120.07598 * 0.02562 * 4 2 1 6 6 C 1.38098 * 119.92802 * 180.02562 * 5 4 2 7 7 C 1.38286 * 120.07387 * 359.97438 * 6 5 4 8 8 C 1.50703 * 119.92812 * 180.02562 * 7 6 5 9 9 H 1.08998 * 115.54660 * 334.32454 * 8 7 6 10 10 C 1.53001 * 117.51768 * 188.63273 * 8 7 6 11 11 C 1.52998 * 117.50222 * 119.99890 * 8 7 6 12 12 H 1.08994 * 117.49691 * 0.02562 * 11 8 7 13 13 C 1.50692 * 117.50068 * 215.00327 * 11 8 7 14 14 O 1.21282 * 120.00259 * 359.97438 * 13 11 8 15 15 N 1.34773 * 120.00305 * 179.97438 * 13 11 8 16 16 C 1.46500 * 119.99896 * 0.02562 * 15 13 11 17 17 C 1.46503 * 120.00289 * 179.97438 * 15 13 11 18 18 C 1.53495 * 114.20729 * 120.00311 * 17 15 13 19 19 N 1.47068 * 87.98832 * 87.71725 * 18 17 15 20 20 C 1.36931 * 136.05648 * 207.08648 * 19 18 17 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72253 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99751 * 24 22 20 26 26 H 1.48490 * 109.47071 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00028 * 24 22 20 28 28 C 1.47071 * 87.88415 * 27.34050 * 19 18 17 29 29 C 1.38291 * 120.15125 * 0.27739 * 7 6 5 30 30 C 1.38111 * 120.06751 * 359.45162 * 29 7 6 31 31 H 1.09004 * 109.47266 * 239.99806 * 1 2 3 32 32 H 1.08993 * 109.47697 * 359.97438 * 1 2 3 33 33 H 1.08998 * 109.47128 * 120.00540 * 1 2 3 34 34 H 1.08994 * 109.46971 * 269.99638 * 3 2 1 35 35 H 1.08995 * 109.46921 * 30.00481 * 3 2 1 36 36 H 1.09000 * 109.46929 * 149.99899 * 3 2 1 37 37 H 1.08001 * 120.03761 * 0.03541 * 5 4 2 38 38 H 1.07998 * 119.96781 * 180.02562 * 6 5 4 39 39 H 1.09004 * 117.49545 * 145.03063 * 10 8 7 40 40 H 1.08997 * 117.50341 * 0.02562 * 10 8 7 41 41 H 1.09004 * 109.46838 * 269.99834 * 16 15 13 42 42 H 1.09005 * 109.47368 * 29.99707 * 16 15 13 43 43 H 1.09004 * 109.47517 * 149.99714 * 16 15 13 44 44 H 1.08999 * 113.28076 * 346.93405 * 17 15 13 45 45 H 1.09004 * 113.46737 * 332.93771 * 18 17 15 46 46 H 1.09003 * 113.51807 * 202.50877 * 18 17 15 47 47 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 48 48 H 1.08998 * 113.46338 * 87.43811 * 28 19 18 49 49 H 1.08993 * 113.47050 * 217.87717 * 28 19 18 50 50 H 1.07996 * 119.96419 * 179.70596 * 29 7 6 51 51 H 1.08004 * 120.03284 * 180.27618 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1634 -1.2096 0.0005 5 6 1.4705 -2.4135 0.0005 6 6 2.1641 -3.6077 0.0016 7 6 3.5469 -3.6058 0.0021 8 6 4.3005 -4.9109 0.0027 9 1 3.7679 -5.7611 0.4288 10 6 5.8157 -4.8522 0.2070 11 6 5.2419 -5.1837 -1.1721 12 1 5.3165 -4.4191 -1.9453 13 6 5.3617 -6.6072 -1.6518 14 8 4.7251 -7.4856 -1.1093 15 7 6.1761 -6.9045 -2.6836 16 6 6.9455 -5.8436 -3.3386 17 6 6.2930 -8.2885 -3.1495 18 6 5.8851 -8.4959 -4.6147 19 7 7.2695 -8.1731 -4.9917 20 6 7.8949 -7.6461 -6.0900 21 1 7.3160 -7.3602 -6.9558 22 6 9.2723 -7.4735 -6.0881 23 7 9.9776 -7.8215 -5.0328 24 14 10.1246 -6.7474 -7.5834 25 1 9.5927 -5.3856 -7.8436 26 1 11.5857 -6.6688 -7.3307 27 1 9.8728 -7.6112 -8.7647 28 6 7.6872 -8.6715 -3.6726 29 6 4.2400 -2.4091 0.0074 30 6 3.5525 -1.2113 0.0007 31 1 -0.3634 -0.5139 0.8900 32 1 -0.3634 1.0276 0.0005 33 1 -0.3633 -0.5139 -0.8899 34 1 2.3791 1.5834 -1.0276 35 1 1.6084 2.0283 0.5139 36 1 3.1499 1.1385 0.5139 37 1 0.3905 -2.4157 -0.0005 38 1 1.6260 -4.5441 0.0012 39 1 6.2798 -5.6639 0.7673 40 1 6.2678 -3.8696 0.3414 41 1 6.3614 -5.4241 -4.1578 42 1 7.1725 -5.0600 -2.6157 43 1 7.8750 -6.2574 -3.7298 44 1 5.8624 -9.0134 -2.4588 45 1 5.1571 -7.7665 -4.9700 46 1 5.6003 -9.5224 -4.8458 47 1 10.9402 -7.7012 -5.0317 48 1 7.8779 -9.7445 -3.6545 49 1 8.4946 -8.0918 -3.2253 50 1 5.3199 -2.4113 0.0126 51 1 4.0943 -0.2771 0.0003 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043424935.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:27 Heat of formation + Delta-G solvation = 86.962397 kcal Electronic energy + Delta-G solvation = -29518.992691 eV Core-core repulsion = 25614.372935 eV Total energy + Delta-G solvation = -3904.619756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.55351 -40.66035 -39.62348 -38.01328 -36.14902 -35.55096 -34.04739 -32.02354 -30.78769 -29.83542 -28.96627 -27.65914 -26.52300 -26.34233 -25.68313 -24.22241 -23.56010 -22.73150 -21.34108 -20.67776 -19.66653 -18.86664 -18.49586 -18.01404 -17.24972 -16.82939 -16.50409 -16.44009 -16.04907 -15.89364 -15.67100 -15.54332 -15.37747 -14.71047 -14.54264 -14.39511 -14.22370 -14.07305 -13.73273 -13.54340 -13.44118 -13.24078 -13.20220 -13.10938 -12.87978 -12.74467 -12.70519 -12.62083 -12.49576 -12.28917 -11.96375 -11.88096 -11.73551 -11.58254 -11.32905 -11.31290 -10.98721 -10.70975 -10.34719 -9.78687 -9.48985 -8.90852 -8.08555 -7.86696 -5.20460 0.58248 0.60390 1.49396 1.51031 1.51194 1.57339 2.02543 2.29493 2.49116 2.76749 3.18812 3.32988 3.44861 3.53748 3.79763 3.81560 3.91193 3.98697 4.10800 4.16320 4.23492 4.30934 4.39466 4.45847 4.48739 4.51569 4.53151 4.57955 4.73050 4.73962 4.78906 4.80952 4.81676 4.89564 4.89983 4.91865 4.93959 5.02585 5.07415 5.16903 5.22419 5.23825 5.34089 5.42362 5.48755 5.56452 5.73986 5.87301 5.91327 5.97397 6.40041 6.56787 6.58675 6.92987 7.19678 7.61771 8.61443 9.29500 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.002219 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.955253 B =12615.936939 C =13606.132144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.646 5.646 3 C 0.088 3.912 4 C 0.200 3.800 5 C -0.202 4.202 6 C -0.073 4.073 7 C -0.122 4.122 8 C -0.067 4.067 9 H 0.106 0.894 10 C -0.130 4.130 11 C -0.185 4.185 12 H 0.134 0.866 13 C 0.540 3.460 14 O -0.585 6.585 15 N -0.577 5.577 16 C 0.094 3.906 17 C 0.100 3.900 18 C 0.108 3.892 19 N -0.625 5.625 20 C -0.222 4.222 21 H 0.080 0.920 22 C -0.056 4.056 23 N -0.947 5.947 24 Si 0.973 3.027 25 H -0.274 1.274 26 H -0.296 1.296 27 H -0.284 1.284 28 C 0.148 3.852 29 C -0.072 4.072 30 C -0.202 4.202 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.098 0.902 40 H 0.133 0.867 41 H 0.046 0.954 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.044 0.956 46 H 0.056 0.944 47 H 0.249 0.751 48 H 0.030 0.970 49 H 0.054 0.946 50 H 0.138 0.862 51 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.985 18.844 13.584 28.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.358 5.358 3 C -0.054 4.054 4 C 0.098 3.902 5 C -0.224 4.224 6 C -0.091 4.091 7 C -0.124 4.124 8 C -0.086 4.086 9 H 0.124 0.876 10 C -0.167 4.167 11 C -0.206 4.206 12 H 0.151 0.849 13 C 0.330 3.670 14 O -0.467 6.467 15 N -0.306 5.306 16 C -0.049 4.049 17 C -0.005 4.005 18 C -0.018 4.018 19 N -0.351 5.351 20 C -0.350 4.350 21 H 0.098 0.902 22 C -0.250 4.250 23 N -0.595 5.595 24 Si 0.802 3.198 25 H -0.200 1.200 26 H -0.222 1.222 27 H -0.211 1.211 28 C 0.021 3.979 29 C -0.090 4.090 30 C -0.224 4.224 31 H 0.073 0.927 32 H 0.111 0.889 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.089 0.911 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.116 0.884 40 H 0.151 0.849 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.092 0.908 44 H 0.122 0.878 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.058 0.942 48 H 0.048 0.952 49 H 0.072 0.928 50 H 0.156 0.844 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.144 18.722 13.628 28.229 hybrid contribution 0.733 -0.383 -1.262 1.509 sum -15.411 18.338 12.367 26.958 Atomic orbital electron populations 1.21715 0.78552 1.03653 1.01164 1.46571 1.05830 1.03201 1.80179 1.21802 0.97712 0.84348 1.01571 1.18038 0.91668 0.86345 0.94153 1.20744 1.00127 0.90899 1.10675 1.20874 0.93533 0.97939 0.96788 1.18889 0.93367 0.92644 1.07502 1.20855 0.92062 0.96742 0.98943 0.87584 1.23223 0.95238 1.04497 0.93711 1.22307 1.09933 0.93695 0.94675 0.84850 1.20203 0.77754 0.90444 0.78602 1.90606 1.47169 1.50455 1.58430 1.47336 1.43133 1.07872 1.32266 1.21743 0.96895 0.89437 0.96811 1.22432 0.98885 0.83860 0.95348 1.22924 0.88260 0.98504 0.92145 1.45902 1.03120 1.71034 1.15093 1.19128 0.90246 1.32697 0.92910 0.90175 1.25467 0.96512 1.02666 1.00322 1.69978 1.05632 1.53917 1.29979 0.85241 0.77034 0.78564 0.78999 1.19980 1.22179 1.21091 1.22427 0.94190 0.96195 0.85058 1.20999 1.00463 0.90985 0.96578 1.20864 0.92186 0.99012 1.10344 0.92689 0.88949 0.93088 0.93302 0.89787 0.91059 0.85132 0.85911 0.88384 0.84929 0.93581 0.89703 0.90800 0.87786 0.93802 0.92629 0.94211 0.95187 0.92750 0.84396 0.84444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.91 9.40 127.77 1.20 2.11 16 2 N -0.65 -9.24 3.41 -747.30 -2.55 -11.79 16 3 C 0.09 0.83 10.16 127.77 1.30 2.13 16 4 C 0.20 3.77 6.55 38.21 0.25 4.02 16 5 C -0.20 -3.99 9.31 22.40 0.21 -3.78 16 6 C -0.07 -1.59 9.73 22.25 0.22 -1.38 16 7 C -0.12 -2.73 5.61 -19.84 -0.11 -2.84 16 8 C -0.07 -1.65 5.55 -11.54 -0.06 -1.71 16 9 H 0.11 2.93 7.67 -2.39 -0.02 2.91 16 10 C -0.13 -2.81 9.56 30.60 0.29 -2.52 16 11 C -0.19 -4.98 4.43 -11.54 -0.05 -5.03 16 12 H 0.13 3.31 7.26 -2.39 -0.02 3.30 16 13 C 0.54 19.14 7.46 87.66 0.65 19.79 16 14 O -0.59 -23.92 15.77 -3.04 -0.05 -23.97 16 15 N -0.58 -21.78 3.12 -821.38 -2.56 -24.34 16 16 C 0.09 3.43 9.11 127.77 1.16 4.60 16 17 C 0.10 4.09 4.67 45.55 0.21 4.30 16 18 C 0.11 4.56 8.31 83.18 0.69 5.25 16 19 N -0.62 -31.12 2.49 -737.94 -1.84 -32.96 16 20 C -0.22 -11.92 10.37 84.04 0.87 -11.05 16 21 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 22 C -0.06 -3.04 5.50 84.86 0.47 -2.58 16 23 N -0.95 -54.40 11.50 21.65 0.25 -54.15 16 24 Si 0.97 44.14 29.55 68.60 2.03 46.17 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 26 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 27 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 28 C 0.15 6.98 6.45 83.27 0.54 7.52 16 29 C -0.07 -1.39 9.29 22.25 0.21 -1.18 16 30 C -0.20 -3.67 9.21 22.40 0.21 -3.47 16 31 H 0.05 0.53 7.95 -2.38 -0.02 0.51 16 32 H 0.09 0.51 7.79 -2.39 -0.02 0.49 16 33 H 0.05 0.54 7.95 -2.39 -0.02 0.52 16 34 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.08 0.46 7.92 -2.39 -0.02 0.44 16 36 H 0.07 0.63 6.20 -2.39 -0.01 0.62 16 37 H 0.13 2.15 6.73 -2.91 -0.02 2.13 16 38 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 39 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.13 2.12 6.17 -2.39 -0.01 2.10 16 41 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.08 2.51 6.64 -2.38 -0.02 2.49 16 43 H 0.07 3.37 5.41 -2.38 -0.01 3.35 16 44 H 0.10 4.12 7.29 -2.39 -0.02 4.10 16 45 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 46 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 48 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.05 2.83 6.25 -2.39 -0.01 2.82 16 50 H 0.14 2.14 6.01 -2.91 -0.02 2.12 16 51 H 0.14 1.94 6.14 -2.91 -0.02 1.93 16 Total: -1.00 -67.87 404.26 4.46 -63.41 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.93 Total: 23.46 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: 8.25 Total: 14.18 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -6.70 Total: -123.24 kcal Atomic # 8 Polarization: -23.92 SS G_CDS: -0.05 Total: -23.97 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -67.87 4.46 -63.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043424935.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.370 kcal (2) G-P(sol) polarization free energy of solvation -67.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds