Wall clock time and date at job start Wed Apr 1 2020 02:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 119.99852 * 2 1 4 4 C 1.39706 * 119.99931 * 179.97438 * 2 1 3 5 5 C 1.39024 * 120.00425 * 354.12447 * 4 2 1 6 6 C 1.38206 * 120.21869 * 180.02562 * 5 4 2 7 7 C 1.38032 * 120.22636 * 359.97438 * 6 5 4 8 8 C 1.39577 * 120.00678 * 359.97438 * 7 6 5 9 9 C 1.47853 * 120.10927 * 179.97438 * 8 7 6 10 10 O 1.21548 * 120.00205 * 185.08458 * 9 8 7 11 11 N 1.34782 * 120.00193 * 5.08027 * 9 8 7 12 12 C 1.46502 * 120.00237 * 175.22634 * 11 9 8 13 13 H 1.08999 * 109.32335 * 53.21107 * 12 11 9 14 14 C 1.53029 * 109.32476 * 293.56675 * 12 11 9 15 15 C 1.53591 * 109.03105 * 295.29699 * 14 12 11 16 16 H 1.09001 * 113.73608 * 168.48422 * 15 14 12 17 17 C 1.55425 * 106.32940 * 293.73130 * 15 14 12 18 18 C 1.55170 * 100.35333 * 73.35825 * 17 15 14 19 19 H 1.08999 * 113.05265 * 162.99171 * 18 17 15 20 20 C 1.52979 * 109.32503 * 172.85428 * 12 11 9 21 21 N 1.47788 * 104.25738 * 40.54763 * 18 17 15 22 22 C 1.36938 * 125.85719 * 153.54058 * 21 18 17 23 23 H 1.08006 * 119.99937 * 21.75035 * 22 21 18 24 24 C 1.38808 * 119.99804 * 201.75197 * 22 21 18 25 25 N 1.31613 * 120.00254 * 355.17853 * 24 22 21 26 26 Si 1.86811 * 119.99731 * 175.17495 * 24 22 21 27 27 H 1.48503 * 109.46883 * 89.99942 * 26 24 22 28 28 H 1.48495 * 109.46748 * 209.99842 * 26 24 22 29 29 H 1.48492 * 109.47112 * 330.00196 * 26 24 22 30 30 C 1.47082 * 108.28922 * 333.54054 * 21 18 17 31 31 C 1.38645 * 120.00436 * 174.14443 * 4 2 1 32 32 H 1.09008 * 109.47107 * 269.99911 * 1 2 3 33 33 H 1.09001 * 109.47261 * 29.99984 * 1 2 3 34 34 H 1.09001 * 109.47149 * 149.99987 * 1 2 3 35 35 H 1.09006 * 109.47248 * 185.23370 * 3 2 1 36 36 H 1.08999 * 109.46985 * 305.23353 * 3 2 1 37 37 H 1.08995 * 109.47687 * 65.23411 * 3 2 1 38 38 H 1.07992 * 119.89511 * 0.02562 * 5 4 2 39 39 H 1.07992 * 119.88846 * 179.70414 * 6 5 4 40 40 H 1.08004 * 119.99148 * 179.97438 * 7 6 5 41 41 H 0.97003 * 119.99943 * 355.23711 * 11 9 8 42 42 H 1.09009 * 109.57677 * 54.94515 * 14 12 11 43 43 H 1.09004 * 109.57849 * 175.33555 * 14 12 11 44 44 H 1.08997 * 111.23887 * 315.57773 * 17 15 14 45 45 H 1.09003 * 111.23540 * 191.13185 * 17 15 14 46 46 H 1.09005 * 109.53509 * 185.06441 * 20 12 11 47 47 H 1.09005 * 109.53414 * 305.29138 * 20 12 11 48 48 H 0.97001 * 119.99887 * 180.02562 * 25 24 22 49 49 H 1.09001 * 109.97833 * 120.45560 * 30 21 18 50 50 H 1.09001 * 109.97774 * 241.74088 * 30 21 18 51 51 H 1.08002 * 120.10952 * 359.95735 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1635 -1.2099 0.0005 5 6 1.4739 -2.4107 0.1243 6 6 2.1605 -3.6102 0.1259 7 6 3.5354 -3.6240 0.0041 8 6 4.2371 -2.4240 -0.1218 9 6 5.7099 -2.4361 -0.2518 10 8 6.3272 -1.3892 -0.2684 11 7 6.3680 -3.6081 -0.3520 12 6 7.8142 -3.6185 -0.5857 13 1 8.3055 -3.0008 0.1660 14 6 8.1064 -3.0517 -1.9768 15 6 7.5034 -3.9868 -3.0355 16 1 7.4907 -3.5626 -4.0395 17 6 8.2975 -5.3198 -2.9443 18 6 7.7289 -5.8931 -1.6192 19 1 7.9228 -6.9587 -1.4972 20 6 8.3337 -5.0535 -0.4802 21 7 6.2846 -5.5854 -1.6797 22 6 5.2888 -6.2831 -1.0498 23 1 5.5191 -6.8964 -0.1911 24 6 3.9835 -6.2022 -1.5150 25 7 3.6858 -5.3826 -2.5008 26 14 2.6494 -7.2568 -0.7418 27 1 2.0291 -6.5200 0.3885 28 1 1.6127 -7.5674 -1.7586 29 1 3.2459 -8.5209 -0.2408 30 6 6.1003 -4.4012 -2.5323 31 6 3.5445 -1.2132 -0.1219 32 1 -0.3634 0.0000 1.0277 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 3.2654 1.0717 -0.0937 36 1 1.8656 1.8798 -0.8394 37 1 2.0063 1.7987 0.9331 38 1 0.3982 -2.4063 0.2195 39 1 1.6200 -4.5395 0.2272 40 1 4.0682 -4.5635 0.0062 41 1 5.8840 -4.4447 -0.2695 42 1 7.6570 -2.0629 -2.0702 43 1 9.1843 -2.9803 -2.1231 44 1 9.3692 -5.1365 -2.8675 45 1 8.0703 -5.9731 -3.7867 46 1 9.4205 -5.0547 -0.5640 47 1 8.0407 -5.4775 0.4803 48 1 2.7736 -5.3258 -2.8256 49 1 5.4590 -4.6479 -3.3786 50 1 5.6579 -3.5906 -1.9533 51 1 4.0821 -0.2815 -0.2186 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047191908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:01 Heat of formation + Delta-G solvation = 89.885304 kcal Electronic energy + Delta-G solvation = -32997.301704 eV Core-core repulsion = 29092.808695 eV Total energy + Delta-G solvation = -3904.493009 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.78028 -39.13681 -37.61279 -35.65349 -33.67588 -33.16010 -31.00383 -30.71944 -30.22827 -29.46302 -28.13028 -27.58513 -25.25988 -24.40204 -23.20149 -23.13615 -21.22639 -20.80015 -19.72326 -19.18969 -18.59714 -17.65807 -16.84276 -15.89238 -15.50072 -15.16423 -14.99558 -14.89606 -14.82759 -14.55706 -14.13594 -13.71557 -13.42705 -13.18339 -13.01383 -12.57738 -12.50080 -12.48600 -12.21857 -12.09410 -11.91570 -11.87045 -11.73796 -11.63572 -11.59124 -11.41721 -11.04697 -10.85305 -10.72950 -10.56730 -10.42240 -10.15264 -9.88617 -9.68375 -9.57043 -9.41828 -9.33552 -8.94979 -8.63903 -8.32791 -7.41608 -6.90657 -6.76745 -5.87269 -3.34955 1.60781 2.21592 3.21789 3.33431 3.34091 3.36189 3.68970 4.18943 4.29595 4.68442 5.08989 5.15896 5.20584 5.28077 5.34436 5.36473 5.44689 5.52781 5.56053 5.65960 5.66441 5.71139 5.75885 5.84091 5.87970 5.98187 6.00347 6.08201 6.15081 6.18326 6.21949 6.23590 6.33082 6.33920 6.47235 6.53038 6.66378 6.69334 6.78103 6.86766 6.95218 6.99882 7.20105 7.25759 7.34215 7.49940 7.51273 7.53608 7.67634 7.85010 7.87614 8.19806 8.70257 9.03687 9.25917 9.61067 10.36918 11.12697 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.005382 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.900316 B = 5201.471869 C = 6981.810962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.645 5.645 3 C 0.092 3.908 4 C 0.184 3.816 5 C -0.174 4.174 6 C -0.089 4.089 7 C -0.100 4.100 8 C -0.089 4.089 9 C 0.548 3.452 10 O -0.575 6.575 11 N -0.688 5.688 12 C 0.162 3.838 13 H 0.059 0.941 14 C -0.123 4.123 15 C -0.118 4.118 16 H 0.074 0.926 17 C -0.126 4.126 18 C 0.149 3.851 19 H 0.067 0.933 20 C -0.142 4.142 21 N -0.591 5.591 22 C -0.273 4.273 23 H 0.077 0.923 24 C 0.022 3.978 25 N -0.876 5.876 26 Si 0.883 3.117 27 H -0.276 1.276 28 H -0.287 1.287 29 H -0.279 1.279 30 C 0.134 3.866 31 C -0.142 4.142 32 H 0.041 0.959 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.155 0.845 41 H 0.434 0.566 42 H 0.069 0.931 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.258 0.742 49 H 0.063 0.937 50 H 0.064 0.936 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 6.118 3.482 7.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.360 5.360 3 C -0.051 4.051 4 C 0.086 3.914 5 C -0.196 4.196 6 C -0.108 4.108 7 C -0.120 4.120 8 C -0.092 4.092 9 C 0.335 3.665 10 O -0.457 6.457 11 N -0.353 5.353 12 C 0.057 3.943 13 H 0.077 0.923 14 C -0.161 4.161 15 C -0.137 4.137 16 H 0.092 0.908 17 C -0.165 4.165 18 C 0.041 3.959 19 H 0.085 0.915 20 C -0.182 4.182 21 N -0.318 5.318 22 C -0.401 4.401 23 H 0.095 0.905 24 C -0.180 4.180 25 N -0.517 5.517 26 Si 0.712 3.288 27 H -0.203 1.203 28 H -0.213 1.213 29 H -0.204 1.204 30 C 0.010 3.990 31 C -0.164 4.164 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.172 0.828 41 H 0.289 0.711 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.081 0.919 50 H 0.081 0.919 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.472 6.891 3.416 7.705 hybrid contribution -1.097 -0.949 0.141 1.457 sum -1.569 5.942 3.557 7.101 Atomic orbital electron populations 1.21488 0.80142 1.02163 1.00505 1.46089 1.04426 1.02978 1.82527 1.21626 0.98228 0.85058 1.00174 1.17545 0.90920 0.85517 0.97416 1.20732 0.99085 0.91399 1.08417 1.20897 0.94571 0.96771 0.98534 1.21894 0.94490 0.98792 0.96803 1.19704 0.93042 0.93607 1.02889 1.18313 0.87263 0.84193 0.76693 1.90622 1.69239 1.32732 1.53129 1.47430 1.08664 1.10741 1.68451 1.20582 0.81739 0.96020 0.95981 0.92264 1.21988 0.99472 0.99696 0.94987 1.22700 0.98796 0.94872 0.97316 0.90812 1.22950 0.97715 0.97322 0.98469 1.21645 0.86203 0.96035 0.92006 0.91543 1.22544 0.99243 0.95326 1.01077 1.44806 1.00010 1.30033 1.56908 1.18963 0.86772 1.25503 1.08847 0.90513 1.25124 0.97785 0.98084 0.96993 1.69922 1.18880 1.35902 1.27032 0.86681 0.82328 0.81093 0.78718 1.20270 1.21294 1.20443 1.22247 0.91377 0.89784 0.95631 1.20659 0.91726 0.98037 1.06018 0.94066 0.92133 0.91573 0.90148 0.93177 0.93628 0.86746 0.86451 0.82755 0.71090 0.91271 0.92519 0.92391 0.92173 0.91817 0.92147 0.93104 0.91943 0.91886 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.12 10.09 59.85 0.60 1.72 16 2 N -0.65 -9.21 3.41 -187.59 -0.64 -9.85 16 3 C 0.09 1.11 10.62 59.85 0.64 1.75 16 4 C 0.18 3.22 6.53 -83.83 -0.55 2.67 16 5 C -0.17 -3.02 9.16 -39.30 -0.36 -3.38 16 6 C -0.09 -1.73 9.99 -39.67 -0.40 -2.13 16 7 C -0.10 -2.11 8.36 -39.16 -0.33 -2.44 16 8 C -0.09 -1.89 5.63 -105.00 -0.59 -2.48 16 9 C 0.55 12.08 5.87 -12.32 -0.07 12.01 16 10 O -0.57 -13.40 15.08 5.32 0.08 -13.32 16 11 N -0.69 -14.40 2.75 -54.74 -0.15 -14.55 16 12 C 0.16 3.03 2.76 -67.93 -0.19 2.85 16 13 H 0.06 1.10 8.06 -51.93 -0.42 0.68 16 14 C -0.12 -2.25 5.09 -26.41 -0.13 -2.38 16 15 C -0.12 -2.25 4.33 -88.12 -0.38 -2.63 16 16 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 17 C -0.13 -2.19 6.18 -24.29 -0.15 -2.34 16 18 C 0.15 2.79 4.30 -65.61 -0.28 2.51 16 19 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 20 C -0.14 -2.39 5.41 -26.28 -0.14 -2.53 16 21 N -0.59 -13.08 1.76 -161.36 -0.28 -13.37 16 22 C -0.27 -6.46 7.47 -15.06 -0.11 -6.57 16 23 H 0.08 1.79 7.83 -52.48 -0.41 1.38 16 24 C 0.02 0.53 3.26 -17.43 -0.06 0.47 16 25 N -0.88 -22.16 9.97 55.49 0.55 -21.60 16 26 Si 0.88 19.18 28.69 -169.99 -4.88 14.31 16 27 H -0.28 -5.71 5.95 56.52 0.34 -5.38 16 28 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 30 C 0.13 3.03 4.31 -2.82 -0.01 3.02 16 31 C -0.14 -2.74 8.86 -38.97 -0.35 -3.08 16 32 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.06 0.55 8.07 -51.93 -0.42 0.13 16 34 H 0.07 0.74 6.46 -51.93 -0.34 0.40 16 35 H 0.08 1.05 5.31 -51.93 -0.28 0.77 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.11 1.69 6.30 -52.49 -0.33 1.36 16 39 H 0.12 2.23 6.16 -52.49 -0.32 1.91 16 40 H 0.16 3.49 3.09 -52.48 -0.16 3.33 16 41 H 0.43 9.48 2.59 -40.82 -0.11 9.37 16 42 H 0.07 1.40 6.71 -51.92 -0.35 1.05 16 43 H 0.06 0.90 7.97 -51.93 -0.41 0.48 16 44 H 0.06 0.87 7.74 -51.93 -0.40 0.46 16 45 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 0.91 8.00 -51.93 -0.42 0.50 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 49 H 0.06 1.63 6.44 -51.93 -0.33 1.30 16 50 H 0.06 1.52 3.60 -58.39 -0.21 1.31 16 51 H 0.13 2.40 5.34 -52.49 -0.28 2.12 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -27.09 365.01 -10.02 -37.11 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: -7.35 Total: 18.74 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.86 Total: -2.97 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.52 Total: -59.37 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.88 Total: 14.31 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.09 -10.02 -37.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047191908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.999 kcal (2) G-P(sol) polarization free energy of solvation -27.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds