Wall clock time and date at job start Wed Apr 1 2020 02:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46497 * 119.99852 * 2 1 4 4 C 1.39706 * 119.99931 * 179.97438 * 2 1 3 5 5 C 1.39024 * 120.00425 * 354.12447 * 4 2 1 6 6 C 1.38206 * 120.21869 * 180.02562 * 5 4 2 7 7 C 1.38032 * 120.22636 * 359.97438 * 6 5 4 8 8 C 1.39577 * 120.00678 * 359.97438 * 7 6 5 9 9 C 1.47853 * 120.10927 * 179.97438 * 8 7 6 10 10 O 1.21548 * 120.00205 * 185.08458 * 9 8 7 11 11 N 1.34782 * 120.00193 * 5.08027 * 9 8 7 12 12 C 1.46502 * 120.00237 * 175.22634 * 11 9 8 13 13 H 1.08999 * 109.32335 * 53.21107 * 12 11 9 14 14 C 1.53029 * 109.32476 * 293.56675 * 12 11 9 15 15 C 1.53591 * 109.03105 * 295.29699 * 14 12 11 16 16 H 1.09001 * 113.73608 * 168.48422 * 15 14 12 17 17 C 1.55425 * 106.32940 * 293.73130 * 15 14 12 18 18 C 1.55170 * 100.35333 * 73.35825 * 17 15 14 19 19 H 1.08999 * 113.05265 * 162.99171 * 18 17 15 20 20 C 1.52979 * 109.32503 * 172.85428 * 12 11 9 21 21 N 1.47788 * 104.25738 * 40.54763 * 18 17 15 22 22 C 1.36938 * 125.85719 * 153.54058 * 21 18 17 23 23 H 1.08006 * 119.99937 * 21.75035 * 22 21 18 24 24 C 1.38808 * 119.99804 * 201.75197 * 22 21 18 25 25 N 1.31613 * 120.00254 * 355.17853 * 24 22 21 26 26 Si 1.86811 * 119.99731 * 175.17495 * 24 22 21 27 27 H 1.48503 * 109.46883 * 89.99942 * 26 24 22 28 28 H 1.48495 * 109.46748 * 209.99842 * 26 24 22 29 29 H 1.48492 * 109.47112 * 330.00196 * 26 24 22 30 30 C 1.47082 * 108.28922 * 333.54054 * 21 18 17 31 31 C 1.38645 * 120.00436 * 174.14443 * 4 2 1 32 32 H 1.09008 * 109.47107 * 269.99911 * 1 2 3 33 33 H 1.09001 * 109.47261 * 29.99984 * 1 2 3 34 34 H 1.09001 * 109.47149 * 149.99987 * 1 2 3 35 35 H 1.09006 * 109.47248 * 185.23370 * 3 2 1 36 36 H 1.08999 * 109.46985 * 305.23353 * 3 2 1 37 37 H 1.08995 * 109.47687 * 65.23411 * 3 2 1 38 38 H 1.07992 * 119.89511 * 0.02562 * 5 4 2 39 39 H 1.07992 * 119.88846 * 179.70414 * 6 5 4 40 40 H 1.08004 * 119.99148 * 179.97438 * 7 6 5 41 41 H 0.97003 * 119.99943 * 355.23711 * 11 9 8 42 42 H 1.09009 * 109.57677 * 54.94515 * 14 12 11 43 43 H 1.09004 * 109.57849 * 175.33555 * 14 12 11 44 44 H 1.08997 * 111.23887 * 315.57773 * 17 15 14 45 45 H 1.09003 * 111.23540 * 191.13185 * 17 15 14 46 46 H 1.09005 * 109.53509 * 185.06441 * 20 12 11 47 47 H 1.09005 * 109.53414 * 305.29138 * 20 12 11 48 48 H 0.97001 * 119.99887 * 180.02562 * 25 24 22 49 49 H 1.09001 * 109.97833 * 120.45560 * 30 21 18 50 50 H 1.09001 * 109.97774 * 241.74088 * 30 21 18 51 51 H 1.08002 * 120.10952 * 359.95735 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1635 -1.2099 0.0005 5 6 1.4739 -2.4107 0.1243 6 6 2.1605 -3.6102 0.1259 7 6 3.5354 -3.6240 0.0041 8 6 4.2371 -2.4240 -0.1218 9 6 5.7099 -2.4361 -0.2518 10 8 6.3272 -1.3892 -0.2684 11 7 6.3680 -3.6081 -0.3520 12 6 7.8142 -3.6185 -0.5857 13 1 8.3055 -3.0008 0.1660 14 6 8.1064 -3.0517 -1.9768 15 6 7.5034 -3.9868 -3.0355 16 1 7.4907 -3.5626 -4.0395 17 6 8.2975 -5.3198 -2.9443 18 6 7.7289 -5.8931 -1.6192 19 1 7.9228 -6.9587 -1.4972 20 6 8.3337 -5.0535 -0.4802 21 7 6.2846 -5.5854 -1.6797 22 6 5.2888 -6.2831 -1.0498 23 1 5.5191 -6.8964 -0.1911 24 6 3.9835 -6.2022 -1.5150 25 7 3.6858 -5.3826 -2.5008 26 14 2.6494 -7.2568 -0.7418 27 1 2.0291 -6.5200 0.3885 28 1 1.6127 -7.5674 -1.7586 29 1 3.2459 -8.5209 -0.2408 30 6 6.1003 -4.4012 -2.5323 31 6 3.5445 -1.2132 -0.1219 32 1 -0.3634 0.0000 1.0277 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 3.2654 1.0717 -0.0937 36 1 1.8656 1.8798 -0.8394 37 1 2.0063 1.7987 0.9331 38 1 0.3982 -2.4063 0.2195 39 1 1.6200 -4.5395 0.2272 40 1 4.0682 -4.5635 0.0062 41 1 5.8840 -4.4447 -0.2695 42 1 7.6570 -2.0629 -2.0702 43 1 9.1843 -2.9803 -2.1231 44 1 9.3692 -5.1365 -2.8675 45 1 8.0703 -5.9731 -3.7867 46 1 9.4205 -5.0547 -0.5640 47 1 8.0407 -5.4775 0.4803 48 1 2.7736 -5.3258 -2.8256 49 1 5.4590 -4.6479 -3.3786 50 1 5.6579 -3.5906 -1.9533 51 1 4.0821 -0.2815 -0.2186 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047191908.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:00 Heat of formation + Delta-G solvation = 77.003393 kcal Electronic energy + Delta-G solvation = -32997.860305 eV Core-core repulsion = 29092.808695 eV Total energy + Delta-G solvation = -3905.051611 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.36081 -40.55176 -39.17577 -36.96512 -35.39083 -34.76284 -32.59360 -32.26169 -31.74336 -30.85074 -29.41149 -28.89797 -26.97480 -25.61004 -24.79494 -24.65351 -22.69946 -22.22167 -21.36105 -20.69161 -20.16231 -19.14118 -18.50472 -17.43829 -16.94601 -16.67294 -16.47942 -16.32922 -16.12198 -15.95401 -15.72334 -15.29360 -14.94493 -14.54758 -14.50966 -14.20041 -13.93289 -13.84011 -13.42863 -13.36470 -13.33501 -13.19679 -13.12053 -13.07498 -13.01524 -12.87253 -12.59580 -12.45026 -12.30903 -12.20311 -11.87318 -11.83339 -11.63196 -11.27666 -11.06148 -10.89715 -10.74467 -10.58735 -10.41281 -9.84692 -9.05326 -8.60463 -8.12537 -7.71260 -5.19471 0.08047 0.73283 1.47377 1.54144 1.57600 2.08094 2.23908 2.50866 2.67678 3.14261 3.38651 3.72017 3.84191 3.91646 3.98037 4.05170 4.11262 4.18445 4.30869 4.40545 4.44921 4.50236 4.50505 4.53214 4.58737 4.66595 4.70042 4.79277 4.81668 4.83444 4.90009 4.90322 4.91024 4.94632 5.06423 5.11058 5.17882 5.27587 5.31328 5.37209 5.45760 5.54602 5.65923 5.67371 5.74650 5.86004 5.88572 5.95429 6.01059 6.36159 6.39425 6.56159 7.01742 7.20156 7.57985 7.83912 8.57347 9.27016 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011320 B = 0.005382 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.900316 B = 5201.471869 C = 6981.810962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.647 5.647 3 C 0.087 3.913 4 C 0.192 3.808 5 C -0.170 4.170 6 C -0.097 4.097 7 C -0.117 4.117 8 C -0.110 4.110 9 C 0.541 3.459 10 O -0.597 6.597 11 N -0.688 5.688 12 C 0.152 3.848 13 H 0.062 0.938 14 C -0.113 4.113 15 C -0.117 4.117 16 H 0.078 0.922 17 C -0.112 4.112 18 C 0.139 3.861 19 H 0.072 0.928 20 C -0.130 4.130 21 N -0.601 5.601 22 C -0.274 4.274 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.897 5.897 26 Si 0.923 3.077 27 H -0.262 1.262 28 H -0.301 1.301 29 H -0.279 1.279 30 C 0.141 3.859 31 C -0.155 4.155 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.145 0.855 39 H 0.119 0.881 40 H 0.137 0.863 41 H 0.430 0.570 42 H 0.042 0.958 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.052 0.948 46 H 0.103 0.897 47 H 0.057 0.943 48 H 0.247 0.753 49 H 0.019 0.981 50 H 0.046 0.954 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.160 6.724 4.149 7.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.360 5.360 3 C -0.055 4.055 4 C 0.091 3.909 5 C -0.193 4.193 6 C -0.116 4.116 7 C -0.137 4.137 8 C -0.114 4.114 9 C 0.329 3.671 10 O -0.482 6.482 11 N -0.350 5.350 12 C 0.047 3.953 13 H 0.080 0.920 14 C -0.151 4.151 15 C -0.136 4.136 16 H 0.096 0.904 17 C -0.151 4.151 18 C 0.033 3.967 19 H 0.090 0.910 20 C -0.170 4.170 21 N -0.328 5.328 22 C -0.403 4.403 23 H 0.095 0.905 24 C -0.206 4.206 25 N -0.540 5.540 26 Si 0.752 3.248 27 H -0.188 1.188 28 H -0.227 1.227 29 H -0.204 1.204 30 C 0.016 3.984 31 C -0.179 4.179 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.163 0.837 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.284 0.716 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.114 0.886 45 H 0.071 0.929 46 H 0.121 0.879 47 H 0.076 0.924 48 H 0.057 0.943 49 H 0.037 0.963 50 H 0.064 0.936 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.082 7.506 4.103 8.554 hybrid contribution -1.262 -1.061 -0.059 1.650 sum -1.343 6.444 4.044 7.726 Atomic orbital electron populations 1.21733 0.77958 1.03403 1.01806 1.46410 1.05884 1.02424 1.81291 1.21780 0.97200 0.84441 1.02105 1.17629 0.90398 0.87047 0.95818 1.20984 1.00496 0.90548 1.07263 1.20976 0.94010 0.97775 0.98800 1.21708 0.95260 0.98001 0.98734 1.19801 0.92865 0.94471 1.04226 1.18552 0.87828 0.84235 0.76491 1.90581 1.69750 1.33299 1.54556 1.47516 1.09723 1.10121 1.67688 1.20861 0.80592 0.97500 0.96345 0.91971 1.21906 1.01226 0.97805 0.94200 1.22663 0.96942 0.96308 0.97713 0.90390 1.22906 0.99464 0.95485 0.97210 1.21897 0.84263 0.96887 0.93687 0.90994 1.22459 1.01306 0.93237 0.99958 1.44901 1.01427 1.29901 1.56530 1.19121 0.87434 1.24838 1.08857 0.90462 1.25482 0.99055 0.98715 0.97386 1.70118 1.18145 1.37232 1.28461 0.86035 0.80524 0.80075 0.78202 1.18791 1.22750 1.20423 1.22001 0.92951 0.89557 0.93902 1.20747 0.92846 0.97408 1.06856 0.92608 0.89670 0.91644 0.91801 0.91151 0.91598 0.83727 0.86351 0.84525 0.71621 0.93894 0.89009 0.88582 0.92928 0.87903 0.92396 0.94292 0.96308 0.93648 0.85450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.78 10.09 127.77 1.29 3.07 16 2 N -0.65 -17.16 3.41 -747.40 -2.55 -19.70 16 3 C 0.09 1.93 10.62 127.77 1.36 3.29 16 4 C 0.19 6.58 6.53 38.17 0.25 6.83 16 5 C -0.17 -5.77 9.16 22.45 0.21 -5.57 16 6 C -0.10 -3.81 9.99 22.21 0.22 -3.58 16 7 C -0.12 -5.12 8.36 22.54 0.19 -4.93 16 8 C -0.11 -4.86 5.63 -20.11 -0.11 -4.98 16 9 C 0.54 24.74 5.87 86.79 0.51 25.25 16 10 O -0.60 -28.75 15.08 -3.87 -0.06 -28.81 16 11 N -0.69 -29.34 2.75 -445.38 -1.22 -30.57 16 12 C 0.15 5.51 2.76 44.99 0.12 5.63 16 13 H 0.06 2.23 8.06 -2.39 -0.02 2.21 16 14 C -0.11 -3.97 5.09 30.80 0.16 -3.81 16 15 C -0.12 -4.39 4.33 -9.18 -0.04 -4.43 16 16 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 17 C -0.11 -3.62 6.18 32.17 0.20 -3.43 16 18 C 0.14 4.98 4.30 45.79 0.20 5.18 16 19 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 20 C -0.13 -4.05 5.41 30.89 0.17 -3.88 16 21 N -0.60 -26.82 1.76 -664.43 -1.17 -27.99 16 22 C -0.27 -13.20 7.47 84.03 0.63 -12.57 16 23 H 0.08 3.64 7.83 -2.91 -0.02 3.61 16 24 C -0.01 -0.34 3.26 84.86 0.28 -0.06 16 25 N -0.90 -47.31 9.97 21.65 0.22 -47.09 16 26 Si 0.92 40.04 28.69 68.60 1.97 42.01 16 27 H -0.26 -10.65 5.95 99.48 0.59 -10.06 16 28 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 29 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 30 C 0.14 6.55 4.31 86.85 0.37 6.93 16 31 C -0.16 -6.15 8.86 22.67 0.20 -5.95 16 32 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.08 1.23 8.07 -2.39 -0.02 1.21 16 34 H 0.06 1.27 6.46 -2.39 -0.02 1.26 16 35 H 0.06 1.64 5.31 -2.38 -0.01 1.63 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.15 3.93 6.30 -2.91 -0.02 3.91 16 39 H 0.12 4.51 6.16 -2.91 -0.02 4.49 16 40 H 0.14 6.44 3.09 -2.91 -0.01 6.43 16 41 H 0.43 19.26 2.59 -92.71 -0.24 19.02 16 42 H 0.04 1.74 6.71 -2.38 -0.02 1.72 16 43 H 0.09 2.57 7.97 -2.38 -0.02 2.56 16 44 H 0.10 2.41 7.74 -2.39 -0.02 2.39 16 45 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.10 2.45 8.00 -2.38 -0.02 2.43 16 47 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 48 H 0.25 13.14 8.31 -92.71 -0.77 12.37 16 49 H 0.02 1.03 6.44 -2.39 -0.02 1.02 16 50 H 0.05 2.30 3.60 -15.15 -0.05 2.24 16 51 H 0.13 4.95 5.34 -2.91 -0.02 4.93 16 Total: -1.00 -61.64 365.01 3.94 -57.69 By element: Atomic # 1 Polarization: 50.90 SS G_CDS: 0.57 Total: 51.47 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 6.19 Total: 2.99 kcal Atomic # 7 Polarization: -120.62 SS G_CDS: -4.72 Total: -125.35 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.06 Total: -28.81 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 1.97 Total: 42.01 kcal Total: -61.64 3.94 -57.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047191908.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.698 kcal (2) G-P(sol) polarization free energy of solvation -61.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds