Wall clock time and date at job start Wed Apr 1 2020 02:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46503 * 120.00179 * 2 1 4 4 C 1.39712 * 120.00141 * 179.97438 * 2 1 3 5 5 C 1.39021 * 120.00756 * 180.02562 * 4 2 1 6 6 C 1.38201 * 120.22151 * 179.97438 * 5 4 2 7 7 C 1.38026 * 120.22608 * 359.72687 * 6 5 4 8 8 C 1.39578 * 120.00407 * 0.54914 * 7 6 5 9 9 C 1.47868 * 120.10710 * 179.71850 * 8 7 6 10 10 O 1.21558 * 119.99777 * 179.72572 * 9 8 7 11 11 N 1.34773 * 120.00270 * 359.73221 * 9 8 7 12 12 C 1.46495 * 120.00198 * 179.97438 * 11 9 8 13 13 H 1.09005 * 109.32448 * 34.64094 * 12 11 9 14 14 C 1.57457 * 109.83917 * 153.66606 * 12 11 9 15 15 C 1.53970 * 108.08266 * 174.91683 * 14 12 11 16 16 H 1.09002 * 112.99812 * 169.26516 * 15 14 12 17 17 C 1.55431 * 107.19885 * 294.65863 * 15 14 12 18 18 C 1.55168 * 100.35455 * 73.65866 * 17 15 14 19 19 H 1.08996 * 112.48412 * 162.66676 * 18 17 15 20 20 C 1.52988 * 109.32529 * 275.00041 * 12 11 9 21 21 N 1.47787 * 104.25640 * 40.54440 * 18 17 15 22 22 C 1.36937 * 125.85500 * 153.49810 * 21 18 17 23 23 H 1.07996 * 120.00155 * 0.03014 * 22 21 18 24 24 C 1.38814 * 119.99892 * 180.02562 * 22 21 18 25 25 N 1.31615 * 120.00043 * 0.02562 * 24 22 21 26 26 Si 1.86806 * 119.99797 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47359 * 60.00175 * 26 24 22 28 28 H 1.48495 * 109.46783 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46848 * 300.00137 * 26 24 22 30 30 C 1.47081 * 108.29001 * 333.54340 * 21 18 17 31 31 C 1.38639 * 120.00037 * 0.02562 * 4 2 1 32 32 H 1.09007 * 109.47622 * 240.00286 * 1 2 3 33 33 H 1.09004 * 109.47329 * 0.02562 * 1 2 3 34 34 H 1.08997 * 109.47321 * 119.99925 * 1 2 3 35 35 H 1.08994 * 109.46900 * 269.99957 * 3 2 1 36 36 H 1.09003 * 109.47136 * 29.99818 * 3 2 1 37 37 H 1.09001 * 109.47369 * 149.99565 * 3 2 1 38 38 H 1.08001 * 119.88896 * 0.02562 * 5 4 2 39 39 H 1.07996 * 119.88630 * 180.02562 * 6 5 4 40 40 H 1.07996 * 119.99907 * 180.29519 * 7 6 5 41 41 H 0.97006 * 119.99892 * 359.97438 * 11 9 8 42 42 H 1.09005 * 109.73572 * 55.46902 * 14 12 11 43 43 H 1.09004 * 110.16581 * 294.61278 * 14 12 11 44 44 H 1.08999 * 111.23001 * 191.43461 * 17 15 14 45 45 H 1.08999 * 111.23373 * 315.87637 * 17 15 14 46 46 H 1.09000 * 109.53895 * 64.74808 * 20 12 11 47 47 H 1.09008 * 109.52906 * 304.52440 * 20 12 11 48 48 H 0.96999 * 119.99651 * 180.02562 * 25 24 22 49 49 H 1.08998 * 109.97960 * 241.73400 * 30 21 18 50 50 H 1.09002 * 109.97557 * 120.45016 * 30 21 18 51 51 H 1.08005 * 120.11610 * 0.04054 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1635 -1.2099 0.0005 5 6 3.5537 -1.2101 0.0011 6 6 4.2492 -2.4043 0.0021 7 6 3.5683 -3.6049 0.0084 8 6 2.1726 -3.6158 0.0020 9 6 1.4409 -4.9008 0.0024 10 8 0.2253 -4.9079 0.0019 11 7 2.1216 -6.0640 0.0034 12 6 1.3967 -7.3370 0.0043 13 1 0.4828 -7.2321 -0.5806 14 6 2.2858 -8.4587 -0.6517 15 6 1.5416 -9.7996 -0.5144 16 1 1.9932 -10.5993 -1.1016 17 6 1.4590 -10.1262 1.0030 18 6 0.3795 -9.1050 1.4496 19 1 -0.0546 -9.3540 2.4179 20 6 1.0366 -7.7135 1.4428 21 7 -0.6186 -9.1305 0.3600 22 6 -1.9482 -8.8269 0.4830 23 1 -2.3494 -8.5370 1.4428 24 6 -2.7804 -8.8918 -0.6262 25 7 -2.2915 -9.2455 -1.7959 26 14 -4.5941 -8.4770 -0.4586 27 1 -4.7400 -7.0782 0.0180 28 1 -5.2591 -8.6227 -1.7783 29 1 -5.2249 -9.4011 0.5178 30 6 0.0609 -9.5388 -0.8789 31 6 1.4704 -2.4106 0.0005 32 1 -0.3634 -0.5138 0.8900 33 1 -0.3634 1.0277 -0.0005 34 1 -0.3634 -0.5138 -0.8900 35 1 2.3791 1.5833 -1.0276 36 1 1.6084 2.0284 0.5138 37 1 3.1499 1.1384 0.5139 38 1 4.0920 -0.2738 0.0015 39 1 5.3292 -2.3981 0.0030 40 1 4.1155 -4.5360 0.0140 41 1 3.0917 -6.0582 0.0035 42 1 3.2439 -8.5181 -0.1351 43 1 2.4505 -8.2388 -1.7065 44 1 1.1259 -11.1507 1.1687 45 1 2.4107 -9.9375 1.4998 46 1 0.3402 -6.9796 1.8483 47 1 1.9409 -7.7345 2.0512 48 1 -2.8730 -9.2904 -2.5710 49 1 -0.0055 -8.7423 -1.6200 50 1 -0.3925 -10.4499 -1.2693 51 1 0.3903 -2.4128 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047191913.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:09:04 Heat of formation + Delta-G solvation = 37.992742 kcal Electronic energy + Delta-G solvation = -30695.130343 eV Core-core repulsion = 26788.387104 eV Total energy + Delta-G solvation = -3906.743240 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.25054 -39.44146 -38.26873 -36.16937 -34.39874 -32.75452 -31.39249 -30.60160 -30.40843 -29.28422 -28.50047 -27.92384 -25.22211 -24.96146 -23.70589 -23.02545 -21.49761 -21.27343 -19.80698 -19.34290 -18.71371 -17.86866 -16.90206 -16.24685 -15.98203 -15.71327 -15.42625 -15.29431 -14.63184 -14.49383 -14.28703 -13.99249 -13.78770 -13.59581 -13.45796 -12.90916 -12.83903 -12.66848 -12.53713 -12.42257 -12.35038 -11.92826 -11.77148 -11.74078 -11.60341 -11.49178 -11.16498 -11.13271 -10.66387 -10.60059 -10.43797 -10.01597 -9.93164 -9.81069 -9.67424 -9.59988 -9.37458 -9.21199 -8.99040 -8.48548 -8.44874 -7.48357 -6.70539 -5.57249 -2.89192 0.95860 1.46407 2.88621 3.16853 3.51712 3.54550 3.55775 3.57824 4.02672 4.62916 4.65836 4.72907 4.81752 4.97849 5.03736 5.11236 5.14410 5.23659 5.32828 5.35276 5.38148 5.44059 5.48822 5.55339 5.59531 5.62964 5.70987 5.80117 5.93031 5.99278 6.10113 6.11902 6.13440 6.17918 6.20365 6.29863 6.33467 6.40348 6.60700 6.65048 6.69312 6.76368 6.95583 6.96654 7.02692 7.05794 7.17630 7.27676 7.68857 7.69956 7.92839 7.96092 8.38232 8.66633 9.35758 9.96177 10.62285 11.54734 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.003148 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.790749 B = 8891.548334 C =10689.199343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.640 5.640 3 C 0.095 3.905 4 C 0.204 3.796 5 C -0.181 4.181 6 C -0.081 4.081 7 C -0.147 4.147 8 C -0.078 4.078 9 C 0.547 3.453 10 O -0.519 6.519 11 N -0.721 5.721 12 C 0.145 3.855 13 H 0.115 0.885 14 C -0.109 4.109 15 C -0.120 4.120 16 H 0.080 0.920 17 C -0.127 4.127 18 C 0.157 3.843 19 H 0.063 0.937 20 C -0.134 4.134 21 N -0.595 5.595 22 C -0.220 4.220 23 H 0.075 0.925 24 C -0.007 4.007 25 N -0.924 5.924 26 Si 0.908 3.092 27 H -0.285 1.285 28 H -0.292 1.292 29 H -0.287 1.287 30 C 0.181 3.819 31 C -0.136 4.136 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.390 0.610 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.043 0.957 48 H 0.250 0.750 49 H 0.046 0.954 50 H 0.043 0.957 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.415 15.506 3.550 22.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.353 5.353 3 C -0.048 4.048 4 C 0.103 3.897 5 C -0.203 4.203 6 C -0.100 4.100 7 C -0.167 4.167 8 C -0.082 4.082 9 C 0.333 3.667 10 O -0.395 6.395 11 N -0.371 5.371 12 C 0.042 3.958 13 H 0.133 0.867 14 C -0.148 4.148 15 C -0.140 4.140 16 H 0.098 0.902 17 C -0.165 4.165 18 C 0.048 3.952 19 H 0.081 0.919 20 C -0.175 4.175 21 N -0.319 5.319 22 C -0.348 4.348 23 H 0.093 0.907 24 C -0.203 4.203 25 N -0.572 5.572 26 Si 0.739 3.261 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.214 1.214 30 C 0.056 3.944 31 C -0.159 4.159 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.141 0.859 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.224 0.776 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.064 0.936 50 H 0.062 0.938 51 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 15.176 15.675 3.378 22.078 hybrid contribution -0.455 0.399 0.006 0.605 sum 14.721 16.074 3.384 22.058 Atomic orbital electron populations 1.21653 0.79108 1.02334 1.01909 1.46308 1.05146 1.02915 1.80881 1.21641 0.97232 0.84901 1.01050 1.17698 0.91139 0.85627 0.95265 1.20791 0.91953 0.98749 1.08824 1.20778 0.99510 0.91600 0.98102 1.21054 0.92910 0.98263 1.04507 1.19856 0.93527 0.93274 1.01517 1.18289 0.87435 0.83719 0.77272 1.90868 1.13151 1.87288 1.48202 1.46072 1.09712 1.06277 1.75050 1.22024 0.96230 0.79864 0.97654 0.86747 1.22690 0.97205 0.95074 0.99791 1.22834 0.99523 0.95231 0.96419 0.90151 1.22951 0.98225 0.99410 0.95933 1.21502 0.89235 0.91391 0.93024 0.91871 1.22572 0.99057 1.00463 0.95409 1.44599 1.04338 1.79530 1.03470 1.18961 0.82476 1.38410 0.94948 0.90706 1.24721 0.98022 1.01928 0.95596 1.69930 1.33881 1.54254 0.99100 0.86244 0.85147 0.78247 0.76444 1.21180 1.21754 1.21384 1.21305 0.85002 0.99350 0.88738 1.20774 1.00652 0.89610 1.04860 0.92456 0.90909 0.92414 0.93486 0.91582 0.91410 0.85901 0.85704 0.86010 0.77604 0.92857 0.92031 0.91858 0.92260 0.92221 0.93841 0.93926 0.93594 0.93841 0.84694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.85 9.40 59.84 0.56 1.41 16 2 N -0.64 -6.46 3.41 -187.59 -0.64 -7.10 16 3 C 0.09 0.64 10.16 59.85 0.61 1.25 16 4 C 0.20 2.46 6.55 -83.83 -0.55 1.91 16 5 C -0.18 -1.84 9.20 -39.30 -0.36 -2.20 16 6 C -0.08 -0.80 10.02 -39.67 -0.40 -1.20 16 7 C -0.15 -1.69 9.54 -39.16 -0.37 -2.06 16 8 C -0.08 -1.16 5.87 -104.99 -0.62 -1.78 16 9 C 0.55 10.04 7.74 -12.32 -0.10 9.94 16 10 O -0.52 -12.17 16.00 5.32 0.09 -12.08 16 11 N -0.72 -11.66 5.04 -52.40 -0.26 -11.92 16 12 C 0.15 2.78 2.17 -65.51 -0.14 2.63 16 13 H 0.11 2.86 5.40 -51.93 -0.28 2.58 16 14 C -0.11 -1.78 5.28 -23.80 -0.13 -1.91 16 15 C -0.12 -2.20 4.27 -87.92 -0.38 -2.57 16 16 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 17 C -0.13 -2.21 6.19 -24.29 -0.15 -2.36 16 18 C 0.16 3.26 4.25 -65.62 -0.28 2.98 16 19 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 20 C -0.13 -2.59 5.31 -26.28 -0.14 -2.73 16 21 N -0.59 -15.21 2.41 -161.37 -0.39 -15.60 16 22 C -0.22 -6.32 10.29 -15.06 -0.16 -6.47 16 23 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 24 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 25 N -0.92 -27.95 10.35 55.49 0.57 -27.37 16 26 Si 0.91 23.37 29.55 -169.99 -5.02 18.34 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 29 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 30 C 0.18 4.38 4.09 -2.83 -0.01 4.37 16 31 C -0.14 -1.98 8.85 -38.97 -0.35 -2.32 16 32 H 0.06 0.56 7.95 -51.93 -0.41 0.14 16 33 H 0.07 0.48 7.80 -51.93 -0.40 0.08 16 34 H 0.06 0.57 7.95 -51.93 -0.41 0.16 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.34 7.92 -51.93 -0.41 -0.07 16 37 H 0.07 0.40 6.19 -51.93 -0.32 0.08 16 38 H 0.12 0.96 6.12 -52.49 -0.32 0.63 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.12 1.13 6.40 -52.49 -0.34 0.79 16 41 H 0.39 4.83 6.68 -40.82 -0.27 4.56 16 42 H 0.05 0.72 8.03 -51.93 -0.42 0.30 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.06 0.87 7.82 -51.93 -0.41 0.47 16 46 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 47 H 0.04 0.72 8.03 -51.92 -0.42 0.30 16 48 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.05 1.25 6.17 -51.93 -0.32 0.93 16 50 H 0.04 1.18 7.40 -51.93 -0.38 0.79 16 51 H 0.14 2.12 6.32 -52.48 -0.33 1.79 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -34.82 391.95 -10.75 -45.57 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.95 Total: 5.65 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -3.04 Total: -1.39 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.72 Total: -61.99 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.34 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.82 -10.75 -45.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047191913.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.563 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds