Wall clock time and date at job start Wed Apr 1 2020 01:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99855 * 2 1 4 4 C 1.53005 * 109.47143 * 276.90996 * 3 2 1 5 5 H 1.08999 * 112.96343 * 53.17628 * 4 3 2 6 6 C 1.53948 * 113.76720 * 184.85512 * 4 3 2 7 7 C 1.53943 * 86.28919 * 137.90504 * 6 4 3 8 8 N 1.47578 * 113.76703 * 281.34827 * 4 3 2 9 9 C 1.36941 * 134.49568 * 41.06249 * 8 4 3 10 10 H 1.08005 * 119.99664 * 9.66047 * 9 8 4 11 11 C 1.38809 * 120.00322 * 189.66197 * 9 8 4 12 12 N 1.31628 * 119.99894 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00240 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46901 * 89.99742 * 13 11 9 15 15 H 1.48491 * 109.47459 * 209.99853 * 13 11 9 16 16 H 1.48506 * 109.47022 * 330.00186 * 13 11 9 17 17 C 1.34775 * 119.99982 * 180.02562 * 2 1 3 18 18 O 1.21279 * 119.99882 * 184.61783 * 17 2 1 19 19 C 1.50701 * 120.00022 * 4.61557 * 17 2 1 20 20 H 1.08997 * 109.41183 * 333.25905 * 19 17 2 21 21 C 1.53050 * 109.43896 * 213.35291 * 19 17 2 22 22 C 1.53381 * 107.92364 * 192.59143 * 21 19 17 23 23 N 1.46419 * 108.67336 * 68.21829 * 22 21 19 24 24 C 1.46907 * 111.00159 * 72.21429 * 23 22 21 25 25 C 1.39407 * 113.13940 * 306.66210 * 23 22 21 26 26 C 1.39619 * 117.65578 * 200.12834 * 25 23 22 27 27 C 1.37817 * 120.41569 * 180.32751 * 26 25 23 28 28 C 1.38308 * 119.95163 * 0.02562 * 27 26 25 29 29 C 1.38047 * 119.89219 * 359.85624 * 28 27 26 30 30 C 1.38373 * 122.95511 * 20.19738 * 25 23 22 31 31 H 1.08997 * 109.46608 * 264.57512 * 1 2 3 32 32 H 1.08997 * 109.46863 * 24.57598 * 1 2 3 33 33 H 1.09004 * 109.46746 * 144.57712 * 1 2 3 34 34 H 1.08999 * 109.46912 * 36.91113 * 3 2 1 35 35 H 1.08999 * 109.47040 * 156.90843 * 3 2 1 36 36 H 1.08989 * 113.73936 * 252.25393 * 6 4 3 37 37 H 1.09001 * 113.74367 * 23.56236 * 6 4 3 38 38 H 1.09001 * 113.76854 * 90.68830 * 7 6 4 39 39 H 1.08998 * 113.77487 * 222.08748 * 7 6 4 40 40 H 0.96998 * 119.99905 * 180.02562 * 12 11 9 41 41 H 1.08994 * 109.77275 * 72.97893 * 21 19 17 42 42 H 1.09004 * 109.76905 * 312.19422 * 21 19 17 43 43 H 1.09003 * 109.60342 * 187.97371 * 22 21 19 44 44 H 1.09007 * 109.60680 * 308.46154 * 22 21 19 45 45 H 1.09000 * 109.47024 * 59.99618 * 24 23 22 46 46 H 1.08994 * 109.46948 * 180.02562 * 24 23 22 47 47 H 1.09002 * 109.46634 * 300.00155 * 24 23 22 48 48 H 1.07998 * 119.79599 * 0.32777 * 26 25 23 49 49 H 1.07998 * 120.02032 * 180.02562 * 27 26 25 50 50 H 1.08011 * 120.05438 * 179.82764 * 28 27 26 51 51 H 1.08001 * 119.75688 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3022 1.7972 -1.4321 5 1 1.3362 1.8637 -1.9325 6 6 3.1577 3.0704 -1.5626 7 6 3.7467 2.4243 -2.8296 8 7 3.3469 1.1337 -2.2360 9 6 3.7739 -0.1600 -2.3753 10 1 3.2064 -0.9663 -1.9344 11 6 4.9359 -0.4350 -3.0830 12 7 5.6272 0.5477 -3.6206 13 14 5.5187 -2.1996 -3.2724 14 1 4.9269 -2.7871 -4.5011 15 1 6.9998 -2.2234 -3.3761 16 1 5.0925 -2.9912 -2.0904 17 6 2.1389 -1.1672 -0.0005 18 8 3.3488 -1.1689 0.0840 19 6 1.3891 -2.4701 -0.1061 20 1 0.3828 -2.3424 0.2928 21 6 2.1227 -3.5466 0.6973 22 6 1.5263 -4.9077 0.3175 23 7 1.8863 -5.2066 -1.0698 24 6 3.3120 -5.5425 -1.1831 25 6 1.5410 -4.1883 -1.9570 26 6 1.4335 -4.5162 -3.3099 27 6 1.1019 -3.5522 -4.2373 28 6 0.8741 -2.2505 -3.8290 29 6 0.9766 -1.9209 -2.4924 30 6 1.3062 -2.8857 -1.5533 31 1 -0.3632 -0.0972 1.0231 32 1 -0.3633 0.9346 -0.4274 33 1 -0.3633 -0.8375 -0.5957 34 1 1.6675 1.9942 0.6172 35 1 3.1978 1.1107 0.4031 36 1 2.5765 3.9713 -1.7589 37 1 3.8816 3.1972 -0.7576 38 1 3.2057 2.6743 -3.7423 39 1 4.8253 2.5486 -2.9255 40 1 6.4390 0.3554 -4.1155 41 1 1.9853 -3.3684 1.7638 42 1 3.1850 -3.5286 0.4537 43 1 1.9284 -5.6792 0.9741 44 1 0.4411 -4.8713 0.4140 45 1 3.5292 -6.4168 -0.5695 46 1 3.5525 -5.7596 -2.2238 47 1 3.9121 -4.6997 -0.8400 48 1 1.6112 -5.5317 -3.6317 49 1 1.0201 -3.8130 -5.2821 50 1 0.6169 -1.4931 -4.5548 51 1 0.7987 -0.9037 -2.1760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085646439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:48 Heat of formation + Delta-G solvation = 78.603354 kcal Electronic energy + Delta-G solvation = -33444.341468 eV Core-core repulsion = 29539.359237 eV Total energy + Delta-G solvation = -3904.982231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.91053 -39.09659 -37.54960 -36.74489 -34.95387 -33.63020 -31.90397 -30.18526 -29.62744 -28.70685 -27.65327 -27.11011 -26.03631 -24.30670 -23.16999 -23.07480 -22.50572 -21.45347 -19.53473 -18.94865 -18.55893 -17.16557 -16.95263 -16.26224 -15.95875 -15.62864 -15.50443 -14.93939 -14.54472 -14.30743 -14.08653 -13.99776 -13.63223 -13.43975 -13.26277 -12.96173 -12.77250 -12.69469 -12.43033 -12.24802 -12.12072 -11.89486 -11.84887 -11.68578 -11.45239 -11.29501 -11.07975 -10.94487 -10.76959 -10.63626 -10.55457 -10.43496 -10.38296 -9.87770 -9.55847 -9.36857 -9.22878 -8.90336 -8.48980 -8.30423 -8.05904 -7.67361 -6.60962 -5.49319 -2.80514 1.63878 1.76106 3.18498 3.43858 3.53937 3.58233 3.63929 3.87162 4.16125 4.65301 4.72145 4.83095 4.89370 5.05763 5.21289 5.28842 5.32830 5.38331 5.41008 5.44295 5.48719 5.53437 5.62280 5.64011 5.66987 5.73198 5.75737 5.78827 5.86267 5.87815 5.91298 5.97348 6.00441 6.06229 6.12940 6.32909 6.39222 6.40367 6.46865 6.56566 6.74828 6.75752 6.80377 6.94698 7.01592 7.02964 7.17432 7.40261 7.59348 7.60974 7.83080 7.89995 8.28994 8.79867 9.33805 10.00846 10.83173 11.67289 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.006423 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.921189 B = 4358.494600 C = 5376.616596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.616 5.616 3 C 0.116 3.884 4 C 0.123 3.877 5 H 0.040 0.960 6 C -0.157 4.157 7 C 0.147 3.853 8 N -0.593 5.593 9 C -0.186 4.186 10 H 0.098 0.902 11 C -0.013 4.013 12 N -0.930 5.930 13 Si 0.891 3.109 14 H -0.294 1.294 15 H -0.296 1.296 16 H -0.276 1.276 17 C 0.517 3.483 18 O -0.488 6.488 19 C -0.063 4.063 20 H 0.094 0.906 21 C -0.147 4.147 22 C 0.059 3.941 23 N -0.501 5.501 24 C 0.023 3.977 25 C 0.113 3.887 26 C -0.129 4.129 27 C -0.105 4.105 28 C -0.121 4.121 29 C -0.079 4.079 30 C -0.109 4.109 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.018 0.982 39 H 0.081 0.919 40 H 0.246 0.754 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.044 0.956 48 H 0.121 0.879 49 H 0.120 0.880 50 H 0.120 0.880 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.783 -5.589 7.299 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.351 5.351 3 C -0.007 4.007 4 C 0.015 3.985 5 H 0.057 0.943 6 C -0.196 4.196 7 C 0.022 3.978 8 N -0.319 5.319 9 C -0.313 4.313 10 H 0.115 0.885 11 C -0.207 4.207 12 N -0.580 5.580 13 Si 0.723 3.277 14 H -0.222 1.222 15 H -0.223 1.223 16 H -0.202 1.202 17 C 0.303 3.697 18 O -0.360 6.360 19 C -0.085 4.085 20 H 0.112 0.888 21 C -0.186 4.186 22 C -0.068 4.068 23 N -0.218 5.218 24 C -0.123 4.123 25 C 0.017 3.983 26 C -0.148 4.148 27 C -0.124 4.124 28 C -0.140 4.140 29 C -0.098 4.098 30 C -0.112 4.112 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.036 0.964 39 H 0.100 0.900 40 H 0.056 0.944 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.063 0.937 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.138 0.862 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.110 -6.320 7.159 16.219 hybrid contribution 0.685 -0.153 -0.220 0.736 sum -12.425 -6.473 6.939 15.634 Atomic orbital electron populations 1.21802 0.80898 1.03122 1.01023 1.47712 1.05947 1.06402 1.75028 1.21887 0.97818 0.83129 0.97892 1.22648 0.93196 0.91450 0.91246 0.94316 1.23764 0.99223 0.95224 1.01342 1.22344 1.00603 0.83789 0.91111 1.45975 1.35988 1.03529 1.46383 1.19445 1.03578 0.81827 1.26468 0.88495 1.24642 0.97601 0.96443 1.02013 1.69806 1.17914 1.29146 1.41135 0.86350 0.77585 0.85988 0.77767 1.22151 1.22311 1.20193 1.20034 0.88034 0.84429 0.77221 1.90813 1.13290 1.86350 1.45540 1.20247 1.00183 0.94156 0.93868 0.88801 1.22154 1.02047 0.94662 0.99762 1.22199 1.00989 0.95654 0.87980 1.58823 1.18567 1.38212 1.06207 1.22552 0.86006 1.00811 1.02894 1.18336 0.99490 0.88244 0.92183 1.20893 1.02897 0.99526 0.91504 1.20954 0.99128 0.93290 0.99000 1.20980 1.01047 0.96187 0.95759 1.21101 0.97103 0.98559 0.92996 1.19369 1.04959 0.92779 0.94060 0.93148 0.90930 0.91425 0.91913 0.89017 0.93423 0.90798 0.96405 0.90036 0.94435 0.90632 0.89448 0.89844 0.90195 0.90973 0.91129 0.93746 0.86088 0.86205 0.86151 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 8.96 59.85 0.54 1.41 16 2 N -0.62 -10.15 2.38 -181.57 -0.43 -10.58 16 3 C 0.12 2.05 5.36 -4.04 -0.02 2.03 16 4 C 0.12 2.43 4.53 -66.86 -0.30 2.12 16 5 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 6 C -0.16 -2.97 7.86 -25.80 -0.20 -3.17 16 7 C 0.15 3.53 7.78 -2.98 -0.02 3.51 16 8 N -0.59 -15.06 3.56 -170.74 -0.61 -15.67 16 9 C -0.19 -5.23 8.92 -15.06 -0.13 -5.36 16 10 H 0.10 2.62 2.58 -52.48 -0.14 2.49 16 11 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 12 N -0.93 -29.13 11.26 55.49 0.62 -28.50 16 13 Si 0.89 24.53 29.55 -169.99 -5.02 19.51 16 14 H -0.29 -8.00 7.11 56.52 0.40 -7.59 16 15 H -0.30 -8.25 7.11 56.52 0.40 -7.85 16 16 H -0.28 -7.56 7.11 56.52 0.40 -7.15 16 17 C 0.52 9.81 4.06 -10.99 -0.04 9.77 16 18 O -0.49 -11.72 12.86 5.56 0.07 -11.65 16 19 C -0.06 -1.00 1.99 -92.85 -0.18 -1.18 16 20 H 0.09 1.20 6.35 -51.93 -0.33 0.87 16 21 C -0.15 -2.15 5.18 -26.51 -0.14 -2.29 16 22 C 0.06 0.74 5.81 -3.89 -0.02 0.72 16 23 N -0.50 -7.45 4.74 -179.13 -0.85 -8.30 16 24 C 0.02 0.34 9.28 60.07 0.56 0.90 16 25 C 0.11 1.92 5.12 -83.85 -0.43 1.49 16 26 C -0.13 -2.10 9.26 -39.22 -0.36 -2.46 16 27 C -0.11 -1.71 10.04 -39.71 -0.40 -2.11 16 28 C -0.12 -2.11 10.05 -39.63 -0.40 -2.51 16 29 C -0.08 -1.43 6.92 -39.51 -0.27 -1.70 16 30 C -0.11 -1.90 5.15 -104.39 -0.54 -2.44 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.75 8.03 -51.93 -0.42 0.34 16 33 H 0.07 0.77 5.08 -51.93 -0.26 0.51 16 34 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 35 H 0.09 1.94 7.18 -51.93 -0.37 1.57 16 36 H 0.05 0.76 8.14 -51.94 -0.42 0.34 16 37 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 2.22 6.77 -51.93 -0.35 1.86 16 40 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 1.58 5.72 -51.93 -0.30 1.29 16 43 H 0.08 0.86 8.02 -51.93 -0.42 0.45 16 44 H 0.08 0.90 8.11 -51.93 -0.42 0.47 16 45 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 46 H 0.07 1.06 7.64 -51.93 -0.40 0.67 16 47 H 0.04 0.79 6.51 -51.93 -0.34 0.45 16 48 H 0.12 1.74 8.06 -52.49 -0.42 1.32 16 49 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 50 H 0.12 1.95 8.06 -52.48 -0.42 1.52 16 51 H 0.13 2.31 5.23 -52.49 -0.27 2.04 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -35.63 382.18 -10.73 -46.36 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -7.79 Total: 4.83 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.48 Total: -1.76 kcal Atomic # 7 Polarization: -61.78 SS G_CDS: -1.26 Total: -63.04 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.07 Total: -11.65 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.02 Total: 19.51 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.63 -10.73 -46.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.962 kcal (2) G-P(sol) polarization free energy of solvation -35.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds