Wall clock time and date at job start Wed Apr 1 2020 01:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99855 * 2 1 4 4 C 1.53005 * 109.47143 * 276.90996 * 3 2 1 5 5 H 1.08999 * 112.96343 * 53.17628 * 4 3 2 6 6 C 1.53948 * 113.76720 * 184.85512 * 4 3 2 7 7 C 1.53943 * 86.28919 * 137.90504 * 6 4 3 8 8 N 1.47578 * 113.76703 * 281.34827 * 4 3 2 9 9 C 1.36941 * 134.49568 * 41.06249 * 8 4 3 10 10 H 1.08005 * 119.99664 * 9.66047 * 9 8 4 11 11 C 1.38809 * 120.00322 * 189.66197 * 9 8 4 12 12 N 1.31628 * 119.99894 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00240 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46901 * 89.99742 * 13 11 9 15 15 H 1.48491 * 109.47459 * 209.99853 * 13 11 9 16 16 H 1.48506 * 109.47022 * 330.00186 * 13 11 9 17 17 C 1.34775 * 119.99982 * 180.02562 * 2 1 3 18 18 O 1.21279 * 119.99882 * 184.61783 * 17 2 1 19 19 C 1.50701 * 120.00022 * 4.61557 * 17 2 1 20 20 H 1.08997 * 109.41183 * 333.25905 * 19 17 2 21 21 C 1.53050 * 109.43896 * 213.35291 * 19 17 2 22 22 C 1.53381 * 107.92364 * 192.59143 * 21 19 17 23 23 N 1.46419 * 108.67336 * 68.21829 * 22 21 19 24 24 C 1.46907 * 111.00159 * 72.21429 * 23 22 21 25 25 C 1.39407 * 113.13940 * 306.66210 * 23 22 21 26 26 C 1.39619 * 117.65578 * 200.12834 * 25 23 22 27 27 C 1.37817 * 120.41569 * 180.32751 * 26 25 23 28 28 C 1.38308 * 119.95163 * 0.02562 * 27 26 25 29 29 C 1.38047 * 119.89219 * 359.85624 * 28 27 26 30 30 C 1.38373 * 122.95511 * 20.19738 * 25 23 22 31 31 H 1.08997 * 109.46608 * 264.57512 * 1 2 3 32 32 H 1.08997 * 109.46863 * 24.57598 * 1 2 3 33 33 H 1.09004 * 109.46746 * 144.57712 * 1 2 3 34 34 H 1.08999 * 109.46912 * 36.91113 * 3 2 1 35 35 H 1.08999 * 109.47040 * 156.90843 * 3 2 1 36 36 H 1.08989 * 113.73936 * 252.25393 * 6 4 3 37 37 H 1.09001 * 113.74367 * 23.56236 * 6 4 3 38 38 H 1.09001 * 113.76854 * 90.68830 * 7 6 4 39 39 H 1.08998 * 113.77487 * 222.08748 * 7 6 4 40 40 H 0.96998 * 119.99905 * 180.02562 * 12 11 9 41 41 H 1.08994 * 109.77275 * 72.97893 * 21 19 17 42 42 H 1.09004 * 109.76905 * 312.19422 * 21 19 17 43 43 H 1.09003 * 109.60342 * 187.97371 * 22 21 19 44 44 H 1.09007 * 109.60680 * 308.46154 * 22 21 19 45 45 H 1.09000 * 109.47024 * 59.99618 * 24 23 22 46 46 H 1.08994 * 109.46948 * 180.02562 * 24 23 22 47 47 H 1.09002 * 109.46634 * 300.00155 * 24 23 22 48 48 H 1.07998 * 119.79599 * 0.32777 * 26 25 23 49 49 H 1.07998 * 120.02032 * 180.02562 * 27 26 25 50 50 H 1.08011 * 120.05438 * 179.82764 * 28 27 26 51 51 H 1.08001 * 119.75688 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3022 1.7972 -1.4321 5 1 1.3362 1.8637 -1.9325 6 6 3.1577 3.0704 -1.5626 7 6 3.7467 2.4243 -2.8296 8 7 3.3469 1.1337 -2.2360 9 6 3.7739 -0.1600 -2.3753 10 1 3.2064 -0.9663 -1.9344 11 6 4.9359 -0.4350 -3.0830 12 7 5.6272 0.5477 -3.6206 13 14 5.5187 -2.1996 -3.2724 14 1 4.9269 -2.7871 -4.5011 15 1 6.9998 -2.2234 -3.3761 16 1 5.0925 -2.9912 -2.0904 17 6 2.1389 -1.1672 -0.0005 18 8 3.3488 -1.1689 0.0840 19 6 1.3891 -2.4701 -0.1061 20 1 0.3828 -2.3424 0.2928 21 6 2.1227 -3.5466 0.6973 22 6 1.5263 -4.9077 0.3175 23 7 1.8863 -5.2066 -1.0698 24 6 3.3120 -5.5425 -1.1831 25 6 1.5410 -4.1883 -1.9570 26 6 1.4335 -4.5162 -3.3099 27 6 1.1019 -3.5522 -4.2373 28 6 0.8741 -2.2505 -3.8290 29 6 0.9766 -1.9209 -2.4924 30 6 1.3062 -2.8857 -1.5533 31 1 -0.3632 -0.0972 1.0231 32 1 -0.3633 0.9346 -0.4274 33 1 -0.3633 -0.8375 -0.5957 34 1 1.6675 1.9942 0.6172 35 1 3.1978 1.1107 0.4031 36 1 2.5765 3.9713 -1.7589 37 1 3.8816 3.1972 -0.7576 38 1 3.2057 2.6743 -3.7423 39 1 4.8253 2.5486 -2.9255 40 1 6.4390 0.3554 -4.1155 41 1 1.9853 -3.3684 1.7638 42 1 3.1850 -3.5286 0.4537 43 1 1.9284 -5.6792 0.9741 44 1 0.4411 -4.8713 0.4140 45 1 3.5292 -6.4168 -0.5695 46 1 3.5525 -5.7596 -2.2238 47 1 3.9121 -4.6997 -0.8400 48 1 1.6112 -5.5317 -3.6317 49 1 1.0201 -3.8130 -5.2821 50 1 0.6169 -1.4931 -4.5548 51 1 0.7987 -0.9037 -2.1760 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085646439.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:47 Heat of formation + Delta-G solvation = 55.522776 kcal Electronic energy + Delta-G solvation = -33445.342317 eV Core-core repulsion = 29539.359237 eV Total energy + Delta-G solvation = -3905.983080 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.18609 -40.51775 -39.25075 -37.95651 -36.38502 -34.90938 -34.03753 -31.38853 -30.90291 -30.16072 -29.64675 -28.28160 -27.24438 -25.58582 -25.17165 -24.37511 -23.90716 -22.85713 -20.81929 -20.71405 -19.86376 -18.79278 -18.45097 -17.70759 -17.20919 -16.99743 -16.88313 -16.62362 -16.14676 -15.79343 -15.50926 -15.39584 -15.22386 -14.84326 -14.74236 -14.31075 -14.20388 -13.91845 -13.80621 -13.46368 -13.35671 -13.23980 -13.11361 -13.08302 -12.97569 -12.93517 -12.78085 -12.60408 -12.40287 -12.36126 -12.28906 -11.79017 -11.75517 -11.63936 -11.40288 -11.18060 -10.83615 -10.62062 -10.24475 -9.62949 -9.47391 -8.92124 -8.67570 -7.75288 -5.02628 0.34376 0.45031 1.28183 1.29795 1.40454 1.76592 2.16130 2.51234 2.66539 2.94399 3.40040 3.49124 3.53805 3.68395 3.74459 3.91311 4.01725 4.13236 4.18505 4.23521 4.25300 4.32820 4.36593 4.40649 4.43168 4.45722 4.52983 4.57461 4.59643 4.67154 4.71473 4.76124 4.79910 4.80764 4.92944 4.93991 4.96120 5.08024 5.09368 5.17451 5.19117 5.34528 5.46033 5.47358 5.63467 5.70853 5.77359 5.78811 5.85519 5.98954 6.13246 6.36936 6.54246 7.12341 7.40491 7.81754 8.70996 9.41920 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.010636 B = 0.006423 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.921189 B = 4358.494600 C = 5376.616596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.614 5.614 3 C 0.121 3.879 4 C 0.127 3.873 5 H 0.063 0.937 6 C -0.128 4.128 7 C 0.134 3.866 8 N -0.623 5.623 9 C -0.151 4.151 10 H 0.109 0.891 11 C -0.084 4.084 12 N -0.964 5.964 13 Si 0.930 3.070 14 H -0.291 1.291 15 H -0.307 1.307 16 H -0.281 1.281 17 C 0.511 3.489 18 O -0.553 6.553 19 C -0.059 4.059 20 H 0.131 0.869 21 C -0.144 4.144 22 C 0.062 3.938 23 N -0.498 5.498 24 C 0.025 3.975 25 C 0.101 3.899 26 C -0.137 4.137 27 C -0.111 4.111 28 C -0.140 4.140 29 C -0.094 4.094 30 C -0.122 4.122 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.113 0.887 35 H 0.050 0.950 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.018 0.982 39 H 0.041 0.959 40 H 0.233 0.767 41 H 0.098 0.902 42 H 0.045 0.955 43 H 0.109 0.891 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.007 0.993 48 H 0.139 0.861 49 H 0.143 0.857 50 H 0.125 0.875 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.550 -5.930 9.120 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.347 5.347 3 C -0.003 4.003 4 C 0.020 3.980 5 H 0.081 0.919 6 C -0.167 4.167 7 C 0.008 3.992 8 N -0.348 5.348 9 C -0.281 4.281 10 H 0.126 0.874 11 C -0.274 4.274 12 N -0.618 5.618 13 Si 0.764 3.236 14 H -0.220 1.220 15 H -0.235 1.235 16 H -0.207 1.207 17 C 0.299 3.701 18 O -0.429 6.429 19 C -0.080 4.080 20 H 0.148 0.852 21 C -0.184 4.184 22 C -0.065 4.065 23 N -0.214 5.214 24 C -0.120 4.120 25 C 0.005 3.995 26 C -0.157 4.157 27 C -0.129 4.129 28 C -0.159 4.159 29 C -0.113 4.113 30 C -0.125 4.125 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.089 0.911 34 H 0.131 0.869 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.036 0.964 39 H 0.059 0.941 40 H 0.042 0.958 41 H 0.116 0.884 42 H 0.064 0.936 43 H 0.127 0.873 44 H 0.120 0.880 45 H 0.124 0.876 46 H 0.082 0.918 47 H 0.026 0.974 48 H 0.157 0.843 49 H 0.161 0.839 50 H 0.143 0.857 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.974 -6.645 9.011 20.334 hybrid contribution 1.712 0.013 -0.715 1.855 sum -15.262 -6.633 8.296 18.594 Atomic orbital electron populations 1.22138 0.77463 1.04450 1.03409 1.47852 1.08066 1.05267 1.73507 1.21733 0.97016 0.84785 0.96767 1.22901 0.92707 0.90610 0.91751 0.91946 1.23500 0.98717 0.96526 0.97917 1.22342 0.98607 0.84623 0.93612 1.46384 1.37800 1.03016 1.47644 1.19849 1.02094 0.83731 1.22397 0.87421 1.25191 0.99260 0.98344 1.04604 1.69966 1.18396 1.29827 1.43627 0.85676 0.76536 0.84014 0.77395 1.21957 1.23453 1.20702 1.20657 0.87524 0.86039 0.75840 1.90792 1.16093 1.87370 1.48688 1.20326 1.01645 0.92662 0.93413 0.85175 1.22134 0.99510 0.95774 1.00947 1.22379 1.02240 0.95005 0.86909 1.58915 1.17933 1.37304 1.07250 1.22557 0.85769 1.00639 1.03068 1.18619 0.99214 0.88710 0.92989 1.21218 1.02412 1.00486 0.91541 1.21270 0.98465 0.92866 1.00342 1.21210 1.01676 0.97061 0.95927 1.21156 0.98112 0.98523 0.93498 1.19588 1.04980 0.93039 0.94873 0.89894 0.88938 0.91112 0.86925 0.93087 0.88882 0.91017 0.96429 0.94065 0.95770 0.88369 0.93609 0.87262 0.88032 0.87611 0.91771 0.97389 0.84347 0.83905 0.85668 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.26 8.96 127.77 1.15 2.40 16 2 N -0.61 -18.58 2.38 -846.75 -2.01 -20.60 16 3 C 0.12 3.95 5.36 86.38 0.46 4.41 16 4 C 0.13 4.69 4.53 45.10 0.20 4.90 16 5 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 6 C -0.13 -4.55 7.86 31.25 0.25 -4.31 16 7 C 0.13 6.48 7.78 86.48 0.67 7.15 16 8 N -0.62 -31.78 3.56 -694.10 -2.47 -34.25 16 9 C -0.15 -8.74 8.92 84.03 0.75 -7.99 16 10 H 0.11 5.94 2.58 -2.91 -0.01 5.93 16 11 C -0.08 -5.31 5.50 84.86 0.47 -4.84 16 12 N -0.96 -63.49 11.26 21.65 0.24 -63.25 16 13 Si 0.93 52.95 29.55 68.60 2.03 54.97 16 14 H -0.29 -16.13 7.11 99.48 0.71 -15.43 16 15 H -0.31 -17.73 7.11 99.48 0.71 -17.03 16 16 H -0.28 -15.97 7.11 99.48 0.71 -15.26 16 17 C 0.51 18.92 4.06 87.66 0.36 19.28 16 18 O -0.55 -27.16 12.86 -3.02 -0.04 -27.20 16 19 C -0.06 -1.77 1.99 -12.24 -0.02 -1.79 16 20 H 0.13 2.84 6.35 -2.39 -0.02 2.82 16 21 C -0.14 -4.01 5.18 30.74 0.16 -3.85 16 22 C 0.06 1.35 5.81 86.52 0.50 1.86 16 23 N -0.50 -13.84 4.74 -720.63 -3.42 -17.26 16 24 C 0.03 0.74 9.28 127.69 1.19 1.92 16 25 C 0.10 3.29 5.12 38.30 0.20 3.49 16 26 C -0.14 -4.32 9.26 22.50 0.21 -4.11 16 27 C -0.11 -3.50 10.04 22.19 0.22 -3.27 16 28 C -0.14 -4.81 10.05 22.24 0.22 -4.58 16 29 C -0.09 -3.32 6.92 22.31 0.15 -3.17 16 30 C -0.12 -4.11 5.15 -19.71 -0.10 -4.21 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.41 8.03 -2.39 -0.02 1.39 16 33 H 0.07 1.33 5.08 -2.39 -0.01 1.32 16 34 H 0.11 2.60 8.12 -2.39 -0.02 2.58 16 35 H 0.05 2.13 7.18 -2.39 -0.02 2.12 16 36 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.07 2.61 8.10 -2.39 -0.02 2.59 16 38 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.04 2.33 6.77 -2.39 -0.02 2.32 16 40 H 0.23 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.05 1.69 5.72 -2.39 -0.01 1.67 16 43 H 0.11 1.86 8.02 -2.39 -0.02 1.84 16 44 H 0.10 1.84 8.11 -2.38 -0.02 1.82 16 45 H 0.11 2.30 8.10 -2.39 -0.02 2.28 16 46 H 0.06 1.91 7.64 -2.39 -0.02 1.89 16 47 H 0.01 0.28 6.51 -2.39 -0.02 0.26 16 48 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 49 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 50 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 51 H 0.12 4.26 5.23 -2.91 -0.02 4.25 16 Total: -1.00 -84.60 382.18 2.29 -82.31 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.94 Total: 21.98 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 7.03 Total: 3.29 kcal Atomic # 7 Polarization: -127.69 SS G_CDS: -7.66 Total: -135.35 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.04 Total: -27.20 kcal Atomic # 14 Polarization: 52.95 SS G_CDS: 2.03 Total: 54.97 kcal Total: -84.60 2.29 -82.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646439.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.828 kcal (2) G-P(sol) polarization free energy of solvation -84.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds