Wall clock time and date at job start Wed Apr 1 2020 01:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00289 * 2 1 4 4 C 1.53002 * 109.47266 * 82.71434 * 3 2 1 5 5 H 1.08996 * 112.78547 * 285.54967 * 4 3 2 6 6 C 1.53235 * 113.38273 * 154.83733 * 4 3 2 7 7 C 1.53492 * 83.43326 * 219.29489 * 6 4 3 8 8 N 1.47069 * 87.98250 * 25.90282 * 7 6 4 9 9 C 1.36940 * 136.05916 * 152.84623 * 8 7 6 10 10 H 1.07994 * 120.00438 * 152.30420 * 9 8 7 11 11 C 1.38813 * 119.99601 * 332.30768 * 9 8 7 12 12 N 1.31620 * 119.99619 * 173.26123 * 11 9 8 13 13 Si 1.86795 * 120.00270 * 353.25360 * 11 9 8 14 14 H 1.48504 * 109.46907 * 89.51633 * 13 11 9 15 15 H 1.48494 * 109.47425 * 329.51556 * 13 11 9 16 16 H 1.48503 * 109.47343 * 209.51152 * 13 11 9 17 17 C 1.34773 * 120.00006 * 179.97438 * 2 1 3 18 18 O 1.21291 * 120.00322 * 185.14176 * 17 2 1 19 19 C 1.50702 * 119.99919 * 5.14661 * 17 2 1 20 20 H 1.08992 * 109.44150 * 29.26166 * 19 17 2 21 21 C 1.53042 * 109.43959 * 269.33149 * 19 17 2 22 22 C 1.53384 * 107.91901 * 192.66551 * 21 19 17 23 23 N 1.46428 * 108.64576 * 68.28696 * 22 21 19 24 24 C 1.46904 * 111.00109 * 181.11283 * 23 22 21 25 25 C 1.39404 * 113.13334 * 306.66785 * 23 22 21 26 26 C 1.39625 * 117.65264 * 199.88410 * 25 23 22 27 27 C 1.37801 * 120.41961 * 180.26840 * 26 25 23 28 28 C 1.38308 * 119.95432 * 0.02562 * 27 26 25 29 29 C 1.38047 * 119.89173 * 359.88069 * 28 27 26 30 30 C 1.38321 * 122.94841 * 20.00300 * 25 23 22 31 31 H 1.08999 * 109.46935 * 95.09476 * 1 2 3 32 32 H 1.08997 * 109.47227 * 215.09889 * 1 2 3 33 33 H 1.09000 * 109.47180 * 335.09909 * 1 2 3 34 34 H 1.08999 * 109.46661 * 322.72124 * 3 2 1 35 35 H 1.09001 * 109.47546 * 202.71963 * 3 2 1 36 36 H 1.09009 * 114.32676 * 105.66257 * 6 4 3 37 37 H 1.09005 * 114.02067 * 332.90950 * 6 4 3 38 38 H 1.08995 * 113.47327 * 271.11795 * 7 6 4 39 39 H 1.09006 * 113.52063 * 140.68745 * 7 6 4 40 40 H 0.97005 * 119.99955 * 179.97438 * 12 11 9 41 41 H 1.09002 * 109.77197 * 312.27080 * 21 19 17 42 42 H 1.09004 * 109.77054 * 73.00793 * 21 19 17 43 43 H 1.09005 * 109.60710 * 188.03572 * 22 21 19 44 44 H 1.09000 * 109.61109 * 308.54087 * 22 21 19 45 45 H 1.09001 * 109.46385 * 68.33162 * 24 23 22 46 46 H 1.09001 * 109.47212 * 188.32833 * 24 23 22 47 47 H 1.08995 * 109.47024 * 308.33065 * 24 23 22 48 48 H 1.07998 * 119.78475 * 0.29814 * 26 25 23 49 49 H 1.08002 * 120.02175 * 180.02562 * 27 26 25 50 50 H 1.08008 * 120.05284 * 179.89827 * 28 27 26 51 51 H 1.07996 * 119.76206 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2942 1.8019 1.4309 5 1 1.3523 2.2149 1.7919 6 6 3.4930 2.7296 1.6545 7 6 3.5799 2.0023 3.0034 8 7 2.9157 0.8542 2.3682 9 6 2.8913 -0.5014 2.5609 10 1 2.0214 -1.0724 2.2719 11 6 3.9848 -1.1415 3.1278 12 7 3.9127 -2.4192 3.4353 13 14 5.5586 -0.1897 3.4541 14 1 5.5039 0.4062 4.8132 15 1 5.7019 0.8907 2.4454 16 1 6.7212 -1.1092 3.3632 17 6 2.1388 -1.1672 0.0005 18 8 3.3481 -1.1693 0.0947 19 6 1.3899 -2.4697 -0.1160 20 1 0.4737 -2.3117 -0.6848 21 6 1.0392 -2.9824 1.2827 22 6 0.5726 -4.4374 1.1487 23 7 1.7174 -5.2620 0.7567 24 6 1.3213 -6.6665 0.5875 25 6 2.3711 -4.7869 -0.3793 26 6 3.1791 -5.6816 -1.0837 27 6 3.8560 -5.2710 -2.2116 28 6 3.7371 -3.9651 -2.6513 29 6 2.9381 -3.0765 -1.9602 30 6 2.2526 -3.4830 -0.8254 31 1 -0.3633 -0.0913 -1.0236 32 1 -0.3633 -0.8408 0.5909 33 1 -0.3633 0.9321 0.4327 34 1 1.6710 1.9922 -0.6225 35 1 3.2001 1.1094 -0.3969 36 1 3.2351 3.7859 1.7321 37 1 4.3337 2.5369 0.9878 38 1 2.9841 2.4693 3.7875 39 1 4.6018 1.7923 3.3193 40 1 4.6770 -2.8667 3.8311 41 1 1.9192 -2.9350 1.9242 42 1 0.2397 -2.3757 1.7081 43 1 0.1812 -4.7856 2.1046 44 1 -0.2040 -4.5039 0.3867 45 1 0.6707 -6.7581 -0.2823 46 1 2.2105 -7.2798 0.4424 47 1 0.7886 -7.0034 1.4767 48 1 3.2738 -6.7019 -0.7426 49 1 4.4790 -5.9685 -2.7518 50 1 4.2683 -3.6412 -3.5343 51 1 2.8465 -2.0574 -2.3057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085646440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:51 Heat of formation + Delta-G solvation = 96.160495 kcal Electronic energy + Delta-G solvation = -33036.921864 eV Core-core repulsion = 29132.700967 eV Total energy + Delta-G solvation = -3904.220896 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.54901 -39.12959 -37.75606 -36.44982 -34.58038 -33.77145 -32.02808 -29.91295 -29.53482 -28.92315 -28.07220 -26.96035 -25.77991 -24.16920 -23.19853 -22.78774 -22.57653 -21.34618 -19.39807 -18.97025 -18.36125 -17.05205 -16.68198 -16.38125 -15.82931 -15.51702 -15.23171 -15.15663 -14.88331 -14.17532 -13.95124 -13.79611 -13.45192 -13.26075 -12.93929 -12.78121 -12.70550 -12.62726 -12.37570 -12.31099 -12.03227 -11.85334 -11.78127 -11.66692 -11.50238 -11.23874 -11.11949 -10.93108 -10.66055 -10.60033 -10.49987 -10.31191 -10.08401 -10.02186 -9.53919 -9.43388 -9.13390 -8.65746 -8.34073 -8.27551 -7.72003 -7.22817 -6.71929 -5.65942 -3.02395 1.81311 1.87308 3.50533 3.58783 3.66069 3.66668 3.79804 3.98011 4.27456 4.79645 4.93034 4.98099 5.13112 5.20680 5.33107 5.34798 5.37126 5.45074 5.51243 5.54601 5.58355 5.59911 5.67193 5.67843 5.73003 5.78438 5.84449 5.88948 5.92636 5.94316 5.98783 6.02632 6.10276 6.19441 6.23509 6.30145 6.31828 6.46531 6.48013 6.53404 6.58082 6.65661 6.83783 6.99019 7.13137 7.18256 7.23944 7.30558 7.49686 7.60626 7.70650 8.23618 8.60318 8.90026 9.29535 9.93754 10.64578 11.49651 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.005042 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.363359 B = 5551.622514 C = 6096.076340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.618 5.618 3 C 0.123 3.877 4 C 0.126 3.874 5 H 0.046 0.954 6 C -0.153 4.153 7 C 0.092 3.908 8 N -0.607 5.607 9 C -0.209 4.209 10 H 0.096 0.904 11 C 0.038 3.962 12 N -0.910 5.910 13 Si 0.891 3.109 14 H -0.298 1.298 15 H -0.268 1.268 16 H -0.308 1.308 17 C 0.529 3.471 18 O -0.472 6.472 19 C -0.056 4.056 20 H 0.079 0.921 21 C -0.128 4.128 22 C 0.067 3.933 23 N -0.488 5.488 24 C 0.027 3.973 25 C 0.147 3.853 26 C -0.171 4.171 27 C -0.097 4.097 28 C -0.159 4.159 29 C -0.068 4.068 30 C -0.095 4.095 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.043 0.957 40 H 0.258 0.742 41 H 0.140 0.860 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.035 0.965 45 H 0.033 0.967 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.122 0.878 49 H 0.115 0.885 50 H 0.114 0.886 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.597 -1.424 -10.620 14.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.354 5.354 3 C -0.002 4.002 4 C 0.018 3.982 5 H 0.064 0.936 6 C -0.192 4.192 7 C -0.033 4.033 8 N -0.335 5.335 9 C -0.335 4.335 10 H 0.113 0.887 11 C -0.160 4.160 12 N -0.554 5.554 13 Si 0.725 3.275 14 H -0.226 1.226 15 H -0.194 1.194 16 H -0.236 1.236 17 C 0.315 3.685 18 O -0.342 6.342 19 C -0.078 4.078 20 H 0.097 0.903 21 C -0.165 4.165 22 C -0.059 4.059 23 N -0.200 5.200 24 C -0.119 4.119 25 C 0.048 3.952 26 C -0.192 4.192 27 C -0.116 4.116 28 C -0.178 4.178 29 C -0.087 4.087 30 C -0.099 4.099 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.158 0.842 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.094 0.906 47 H 0.091 0.909 48 H 0.139 0.861 49 H 0.133 0.867 50 H 0.132 0.868 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.569 -1.887 -9.999 13.303 hybrid contribution 0.431 0.594 0.038 0.735 sum -8.137 -1.293 -9.961 12.927 Atomic orbital electron populations 1.21609 0.81354 1.02645 1.00141 1.47504 1.05503 1.05964 1.76478 1.21659 0.97433 0.84184 0.96879 1.22502 0.94808 0.90046 0.90835 0.93637 1.23482 0.99396 0.96898 0.99381 1.22787 0.97343 0.89057 0.94096 1.45666 1.55860 1.00707 1.31246 1.18468 0.99769 0.77847 1.37445 0.88698 1.24862 0.96569 0.94730 0.99883 1.69583 1.30812 1.08814 1.46218 0.86802 0.84911 0.78733 0.77092 1.22575 1.19362 1.23607 1.19729 0.88125 0.83745 0.76923 1.90770 1.13739 1.85836 1.43830 1.20170 0.97144 0.92674 0.97787 0.90285 1.22038 1.05606 0.92920 0.95979 1.22123 0.89590 0.93993 1.00178 1.57840 1.27320 1.03405 1.31435 1.22491 1.00675 0.87860 1.00844 1.18475 0.96038 0.93030 0.87663 1.20990 1.01412 0.99413 0.97370 1.20785 0.98562 0.95962 0.96306 1.20821 1.01705 0.93949 1.01363 1.20834 0.95239 0.98536 0.94106 1.19011 1.01720 0.92803 0.96321 0.93905 0.91851 0.91648 0.92437 0.90009 0.92295 0.90145 0.94799 0.93893 0.93151 0.84192 0.91186 0.89753 0.94635 0.94815 0.90623 0.90865 0.86060 0.86660 0.86800 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.16 9.61 59.84 0.58 1.73 16 2 N -0.62 -11.04 2.47 -181.57 -0.45 -11.49 16 3 C 0.12 2.16 5.54 -4.04 -0.02 2.13 16 4 C 0.13 2.41 4.37 -72.53 -0.32 2.10 16 5 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 6 C -0.15 -2.77 8.00 -26.36 -0.21 -2.98 16 7 C 0.09 2.02 7.14 -8.51 -0.06 1.96 16 8 N -0.61 -14.73 3.28 -177.16 -0.58 -15.31 16 9 C -0.21 -5.77 7.12 -15.06 -0.11 -5.87 16 10 H 0.10 2.63 3.82 -52.49 -0.20 2.43 16 11 C 0.04 1.14 5.43 -17.43 -0.09 1.04 16 12 N -0.91 -28.15 13.14 55.49 0.73 -27.42 16 13 Si 0.89 24.65 25.19 -169.99 -4.28 20.37 16 14 H -0.30 -8.11 7.11 56.52 0.40 -7.71 16 15 H -0.27 -7.23 6.07 56.52 0.34 -6.89 16 16 H -0.31 -8.82 7.11 56.52 0.40 -8.42 16 17 C 0.53 11.00 3.24 -10.99 -0.04 10.97 16 18 O -0.47 -12.16 13.05 5.55 0.07 -12.08 16 19 C -0.06 -1.03 1.84 -92.85 -0.17 -1.20 16 20 H 0.08 1.21 6.91 -51.93 -0.36 0.85 16 21 C -0.13 -2.45 4.23 -26.51 -0.11 -2.56 16 22 C 0.07 1.07 5.47 -3.88 -0.02 1.05 16 23 N -0.49 -8.45 4.78 -179.14 -0.86 -9.31 16 24 C 0.03 0.35 8.87 60.07 0.53 0.88 16 25 C 0.15 2.71 5.82 -83.87 -0.49 2.22 16 26 C -0.17 -2.80 9.02 -39.22 -0.35 -3.15 16 27 C -0.10 -1.49 10.03 -39.72 -0.40 -1.89 16 28 C -0.16 -2.56 10.05 -39.63 -0.40 -2.96 16 29 C -0.07 -1.23 8.47 -39.49 -0.33 -1.57 16 30 C -0.09 -1.81 5.06 -104.38 -0.53 -2.34 16 31 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.85 5.70 -51.93 -0.30 0.55 16 33 H 0.06 0.79 8.03 -51.93 -0.42 0.37 16 34 H 0.06 0.80 8.12 -51.93 -0.42 0.37 16 35 H 0.08 1.64 7.03 -51.93 -0.37 1.28 16 36 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 37 H 0.08 1.53 7.94 -51.93 -0.41 1.12 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.04 1.03 3.49 -51.93 -0.18 0.85 16 40 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 41 H 0.14 3.52 6.06 -51.93 -0.31 3.21 16 42 H 0.07 1.23 6.83 -51.93 -0.35 0.88 16 43 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.04 0.49 8.11 -51.93 -0.42 0.07 16 45 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.08 0.91 6.17 -51.93 -0.32 0.59 16 47 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 48 H 0.12 1.71 5.93 -52.49 -0.31 1.40 16 49 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 50 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 51 H 0.11 1.99 7.36 -52.49 -0.39 1.60 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -35.39 374.39 -10.03 -45.42 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.76 Total: 4.61 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.55 Total: -0.43 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -1.16 Total: -63.52 kcal Atomic # 8 Polarization: -12.16 SS G_CDS: 0.07 Total: -12.08 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -4.28 Total: 20.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.39 -10.03 -45.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.578 kcal (2) G-P(sol) polarization free energy of solvation -35.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds