Wall clock time and date at job start Wed Apr 1 2020 01:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46501 * 120.00289 * 2 1 4 4 C 1.53002 * 109.47266 * 82.71434 * 3 2 1 5 5 H 1.08996 * 112.78547 * 285.54967 * 4 3 2 6 6 C 1.53235 * 113.38273 * 154.83733 * 4 3 2 7 7 C 1.53492 * 83.43326 * 219.29489 * 6 4 3 8 8 N 1.47069 * 87.98250 * 25.90282 * 7 6 4 9 9 C 1.36940 * 136.05916 * 152.84623 * 8 7 6 10 10 H 1.07994 * 120.00438 * 152.30420 * 9 8 7 11 11 C 1.38813 * 119.99601 * 332.30768 * 9 8 7 12 12 N 1.31620 * 119.99619 * 173.26123 * 11 9 8 13 13 Si 1.86795 * 120.00270 * 353.25360 * 11 9 8 14 14 H 1.48504 * 109.46907 * 89.51633 * 13 11 9 15 15 H 1.48494 * 109.47425 * 329.51556 * 13 11 9 16 16 H 1.48503 * 109.47343 * 209.51152 * 13 11 9 17 17 C 1.34773 * 120.00006 * 179.97438 * 2 1 3 18 18 O 1.21291 * 120.00322 * 185.14176 * 17 2 1 19 19 C 1.50702 * 119.99919 * 5.14661 * 17 2 1 20 20 H 1.08992 * 109.44150 * 29.26166 * 19 17 2 21 21 C 1.53042 * 109.43959 * 269.33149 * 19 17 2 22 22 C 1.53384 * 107.91901 * 192.66551 * 21 19 17 23 23 N 1.46428 * 108.64576 * 68.28696 * 22 21 19 24 24 C 1.46904 * 111.00109 * 181.11283 * 23 22 21 25 25 C 1.39404 * 113.13334 * 306.66785 * 23 22 21 26 26 C 1.39625 * 117.65264 * 199.88410 * 25 23 22 27 27 C 1.37801 * 120.41961 * 180.26840 * 26 25 23 28 28 C 1.38308 * 119.95432 * 0.02562 * 27 26 25 29 29 C 1.38047 * 119.89173 * 359.88069 * 28 27 26 30 30 C 1.38321 * 122.94841 * 20.00300 * 25 23 22 31 31 H 1.08999 * 109.46935 * 95.09476 * 1 2 3 32 32 H 1.08997 * 109.47227 * 215.09889 * 1 2 3 33 33 H 1.09000 * 109.47180 * 335.09909 * 1 2 3 34 34 H 1.08999 * 109.46661 * 322.72124 * 3 2 1 35 35 H 1.09001 * 109.47546 * 202.71963 * 3 2 1 36 36 H 1.09009 * 114.32676 * 105.66257 * 6 4 3 37 37 H 1.09005 * 114.02067 * 332.90950 * 6 4 3 38 38 H 1.08995 * 113.47327 * 271.11795 * 7 6 4 39 39 H 1.09006 * 113.52063 * 140.68745 * 7 6 4 40 40 H 0.97005 * 119.99955 * 179.97438 * 12 11 9 41 41 H 1.09002 * 109.77197 * 312.27080 * 21 19 17 42 42 H 1.09004 * 109.77054 * 73.00793 * 21 19 17 43 43 H 1.09005 * 109.60710 * 188.03572 * 22 21 19 44 44 H 1.09000 * 109.61109 * 308.54087 * 22 21 19 45 45 H 1.09001 * 109.46385 * 68.33162 * 24 23 22 46 46 H 1.09001 * 109.47212 * 188.32833 * 24 23 22 47 47 H 1.08995 * 109.47024 * 308.33065 * 24 23 22 48 48 H 1.07998 * 119.78475 * 0.29814 * 26 25 23 49 49 H 1.08002 * 120.02175 * 180.02562 * 27 26 25 50 50 H 1.08008 * 120.05284 * 179.89827 * 28 27 26 51 51 H 1.07996 * 119.76206 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.2942 1.8019 1.4309 5 1 1.3523 2.2149 1.7919 6 6 3.4930 2.7296 1.6545 7 6 3.5799 2.0023 3.0034 8 7 2.9157 0.8542 2.3682 9 6 2.8913 -0.5014 2.5609 10 1 2.0214 -1.0724 2.2719 11 6 3.9848 -1.1415 3.1278 12 7 3.9127 -2.4192 3.4353 13 14 5.5586 -0.1897 3.4541 14 1 5.5039 0.4062 4.8132 15 1 5.7019 0.8907 2.4454 16 1 6.7212 -1.1092 3.3632 17 6 2.1388 -1.1672 0.0005 18 8 3.3481 -1.1693 0.0947 19 6 1.3899 -2.4697 -0.1160 20 1 0.4737 -2.3117 -0.6848 21 6 1.0392 -2.9824 1.2827 22 6 0.5726 -4.4374 1.1487 23 7 1.7174 -5.2620 0.7567 24 6 1.3213 -6.6665 0.5875 25 6 2.3711 -4.7869 -0.3793 26 6 3.1791 -5.6816 -1.0837 27 6 3.8560 -5.2710 -2.2116 28 6 3.7371 -3.9651 -2.6513 29 6 2.9381 -3.0765 -1.9602 30 6 2.2526 -3.4830 -0.8254 31 1 -0.3633 -0.0913 -1.0236 32 1 -0.3633 -0.8408 0.5909 33 1 -0.3633 0.9321 0.4327 34 1 1.6710 1.9922 -0.6225 35 1 3.2001 1.1094 -0.3969 36 1 3.2351 3.7859 1.7321 37 1 4.3337 2.5369 0.9878 38 1 2.9841 2.4693 3.7875 39 1 4.6018 1.7923 3.3193 40 1 4.6770 -2.8667 3.8311 41 1 1.9192 -2.9350 1.9242 42 1 0.2397 -2.3757 1.7081 43 1 0.1812 -4.7856 2.1046 44 1 -0.2040 -4.5039 0.3867 45 1 0.6707 -6.7581 -0.2823 46 1 2.2105 -7.2798 0.4424 47 1 0.7886 -7.0034 1.4767 48 1 3.2738 -6.7019 -0.7426 49 1 4.4790 -5.9685 -2.7518 50 1 4.2683 -3.6412 -3.5343 51 1 2.8465 -2.0574 -2.3057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085646440.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:50 Heat of formation + Delta-G solvation = 71.925005 kcal Electronic energy + Delta-G solvation = -33037.972794 eV Core-core repulsion = 29132.700967 eV Total energy + Delta-G solvation = -3905.271826 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.89633 -40.63121 -39.35119 -37.68255 -36.07160 -35.16566 -34.13083 -31.20403 -30.87032 -30.47777 -29.77161 -28.17749 -27.06195 -25.47084 -25.06044 -24.18413 -24.06556 -22.64329 -20.84764 -20.56318 -19.83608 -18.87876 -17.98121 -17.87154 -17.31477 -17.13179 -16.66400 -16.54284 -16.42748 -15.42110 -15.34795 -15.19952 -15.09738 -14.73523 -14.58017 -14.25580 -14.17095 -14.08952 -13.91701 -13.69123 -13.30025 -13.26080 -13.03408 -12.95839 -12.82780 -12.78073 -12.72666 -12.54423 -12.53746 -12.14173 -12.03463 -11.82571 -11.71821 -11.44208 -11.37912 -11.11134 -10.67981 -10.49761 -10.23084 -9.57176 -9.19432 -8.67586 -8.46560 -7.88517 -5.17310 0.53577 0.60444 1.24046 1.36477 1.41462 2.11319 2.38755 2.58493 2.79276 2.99882 3.24741 3.45530 3.64812 3.82186 3.87225 3.97333 4.08826 4.12054 4.24697 4.29827 4.34656 4.41453 4.42490 4.46482 4.50337 4.51908 4.56470 4.63145 4.67058 4.68014 4.72000 4.78673 4.82113 4.87077 4.92253 4.94888 4.95863 5.00930 5.05772 5.12938 5.21596 5.34439 5.53701 5.59362 5.66923 5.72032 5.78256 5.96081 5.98689 6.25332 6.42552 6.45527 6.78350 6.80930 7.75705 7.78424 8.60127 9.29562 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.012324 B = 0.005042 C = 0.004592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.363359 B = 5551.622514 C = 6096.076340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.620 5.620 3 C 0.122 3.878 4 C 0.128 3.872 5 H 0.076 0.924 6 C -0.130 4.130 7 C 0.078 3.922 8 N -0.642 5.642 9 C -0.164 4.164 10 H 0.092 0.908 11 C -0.024 4.024 12 N -0.946 5.946 13 Si 0.927 3.073 14 H -0.296 1.296 15 H -0.263 1.263 16 H -0.333 1.333 17 C 0.526 3.474 18 O -0.536 6.536 19 C -0.049 4.049 20 H 0.109 0.891 21 C -0.124 4.124 22 C 0.073 3.927 23 N -0.516 5.516 24 C 0.028 3.972 25 C 0.128 3.872 26 C -0.181 4.181 27 C -0.096 4.096 28 C -0.168 4.168 29 C -0.085 4.085 30 C -0.125 4.125 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.108 0.892 35 H 0.049 0.951 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.017 0.983 40 H 0.243 0.757 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.050 0.950 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.141 0.859 49 H 0.149 0.851 50 H 0.136 0.864 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.198 -0.030 -12.468 17.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.355 5.355 3 C -0.002 4.002 4 C 0.022 3.978 5 H 0.093 0.907 6 C -0.168 4.168 7 C -0.046 4.046 8 N -0.370 5.370 9 C -0.292 4.292 10 H 0.109 0.891 11 C -0.217 4.217 12 N -0.595 5.595 13 Si 0.763 3.237 14 H -0.224 1.224 15 H -0.189 1.189 16 H -0.263 1.263 17 C 0.313 3.687 18 O -0.410 6.410 19 C -0.070 4.070 20 H 0.127 0.873 21 C -0.162 4.162 22 C -0.053 4.053 23 N -0.228 5.228 24 C -0.117 4.117 25 C 0.028 3.972 26 C -0.202 4.202 27 C -0.114 4.114 28 C -0.187 4.187 29 C -0.103 4.103 30 C -0.129 4.129 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.068 0.932 36 H 0.126 0.874 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.035 0.965 40 H 0.053 0.947 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.098 0.902 47 H 0.106 0.894 48 H 0.159 0.841 49 H 0.166 0.834 50 H 0.154 0.846 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.237 -0.412 -11.863 16.345 hybrid contribution 1.142 0.279 0.563 1.304 sum -10.095 -0.132 -11.299 15.153 Atomic orbital electron populations 1.21903 0.78327 1.03739 1.02364 1.47662 1.07497 1.05232 1.75075 1.21686 0.96844 0.85099 0.96611 1.22746 0.95950 0.88485 0.90643 0.90692 1.23320 0.98315 0.99234 0.95964 1.23009 0.95936 0.88949 0.96718 1.45996 1.56579 1.00435 1.33984 1.18564 0.98529 0.79610 1.32479 0.89071 1.25316 0.98556 0.95245 1.02604 1.69732 1.30285 1.09918 1.49581 0.86216 0.83014 0.77446 0.77074 1.22433 1.18855 1.26348 1.20216 0.87618 0.85216 0.75602 1.90742 1.16357 1.86846 1.47026 1.20135 0.97914 0.91367 0.97565 0.87295 1.21827 1.03277 0.95656 0.95423 1.22095 0.89872 0.91836 1.01501 1.57867 1.28152 1.05471 1.31350 1.22585 1.01384 0.85484 1.02284 1.18783 0.96838 0.93344 0.88186 1.21333 1.01084 1.00214 0.97573 1.21193 0.98068 0.96201 0.95958 1.21151 1.01329 0.94207 1.01983 1.20925 0.96172 0.98657 0.94579 1.19254 1.03062 0.93487 0.97108 0.90777 0.92103 0.89535 0.87442 0.93249 0.87366 0.91537 0.92679 0.96491 0.94744 0.90084 0.90360 0.88970 0.91785 0.93151 0.90155 0.89430 0.84093 0.83353 0.84573 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.82 9.61 127.77 1.23 3.05 16 2 N -0.62 -20.94 2.47 -846.76 -2.09 -23.03 16 3 C 0.12 3.95 5.54 86.38 0.48 4.43 16 4 C 0.13 4.48 4.37 41.70 0.18 4.67 16 5 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 6 C -0.13 -4.27 8.00 30.84 0.25 -4.03 16 7 C 0.08 3.31 7.14 83.18 0.59 3.91 16 8 N -0.64 -30.56 3.28 -714.42 -2.34 -32.90 16 9 C -0.16 -9.21 7.12 84.03 0.60 -8.61 16 10 H 0.09 5.17 3.82 -2.91 -0.01 5.16 16 11 C -0.02 -1.48 5.43 84.86 0.46 -1.02 16 12 N -0.95 -62.05 13.14 21.65 0.28 -61.77 16 13 Si 0.93 53.08 25.19 68.60 1.73 54.81 16 14 H -0.30 -16.46 7.11 99.48 0.71 -15.75 16 15 H -0.26 -14.51 6.07 99.48 0.60 -13.91 16 16 H -0.33 -20.13 7.11 99.48 0.71 -19.42 16 17 C 0.53 21.98 3.24 87.66 0.28 22.27 16 18 O -0.54 -28.63 13.05 -3.06 -0.04 -28.67 16 19 C -0.05 -1.77 1.84 -12.24 -0.02 -1.79 16 20 H 0.11 3.17 6.91 -2.39 -0.02 3.15 16 21 C -0.12 -4.80 4.23 30.74 0.13 -4.67 16 22 C 0.07 2.28 5.47 86.52 0.47 2.75 16 23 N -0.52 -17.79 4.78 -720.67 -3.44 -21.23 16 24 C 0.03 0.67 8.87 127.69 1.13 1.80 16 25 C 0.13 4.73 5.82 38.29 0.22 4.95 16 26 C -0.18 -5.81 9.02 22.50 0.20 -5.60 16 27 C -0.10 -2.81 10.03 22.18 0.22 -2.59 16 28 C -0.17 -5.31 10.05 22.24 0.22 -5.09 16 29 C -0.08 -3.10 8.47 22.33 0.19 -2.91 16 30 C -0.13 -4.84 5.06 -19.71 -0.10 -4.94 16 31 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.45 5.70 -2.39 -0.01 1.44 16 33 H 0.09 1.66 8.03 -2.39 -0.02 1.64 16 34 H 0.11 2.44 8.12 -2.39 -0.02 2.42 16 35 H 0.05 1.95 7.03 -2.39 -0.02 1.93 16 36 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 37 H 0.07 2.40 7.94 -2.38 -0.02 2.38 16 38 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.02 0.81 3.49 -2.38 -0.01 0.81 16 40 H 0.24 16.01 8.31 -92.70 -0.77 15.24 16 41 H 0.08 4.26 6.06 -2.39 -0.01 4.25 16 42 H 0.08 2.75 6.83 -2.38 -0.02 2.73 16 43 H 0.09 2.67 8.14 -2.38 -0.02 2.65 16 44 H 0.06 1.63 8.11 -2.39 -0.02 1.61 16 45 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.08 1.82 6.17 -2.39 -0.01 1.81 16 47 H 0.09 1.82 8.10 -2.39 -0.02 1.80 16 48 H 0.14 3.79 5.93 -2.91 -0.02 3.77 16 49 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 50 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 51 H 0.11 3.86 7.36 -2.91 -0.02 3.83 16 Total: -1.00 -84.39 374.39 1.68 -82.72 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.84 Total: 23.50 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 6.75 Total: 6.57 kcal Atomic # 7 Polarization: -131.34 SS G_CDS: -7.59 Total: -138.93 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.04 Total: -28.67 kcal Atomic # 14 Polarization: 53.08 SS G_CDS: 1.73 Total: 54.81 kcal Total: -84.39 1.68 -82.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646440.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.642 kcal (2) G-P(sol) polarization free energy of solvation -84.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds