Wall clock time and date at job start Wed Apr 1 2020 01:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46508 * 119.99714 * 2 1 4 4 C 1.53001 * 109.46830 * 94.67387 * 3 2 1 5 5 H 1.09005 * 112.77722 * 45.94456 * 4 3 2 6 6 C 1.53229 * 113.38499 * 275.23441 * 4 3 2 7 7 C 1.53497 * 83.42989 * 219.29146 * 6 4 3 8 8 N 1.47057 * 87.98499 * 25.89819 * 7 6 4 9 9 C 1.36941 * 136.05844 * 152.84635 * 8 7 6 10 10 H 1.08005 * 120.00021 * 188.49415 * 9 8 7 11 11 C 1.38803 * 119.99850 * 8.49380 * 9 8 7 12 12 N 1.31615 * 120.00506 * 17.03479 * 11 9 8 13 13 Si 1.86809 * 119.99923 * 197.03775 * 11 9 8 14 14 H 1.48503 * 109.46995 * 179.97438 * 13 11 9 15 15 H 1.48492 * 109.46974 * 299.99826 * 13 11 9 16 16 H 1.48502 * 109.47015 * 60.00077 * 13 11 9 17 17 C 1.34771 * 120.00337 * 180.02562 * 2 1 3 18 18 O 1.21280 * 120.00330 * 184.98489 * 17 2 1 19 19 C 1.50701 * 119.99619 * 4.98797 * 17 2 1 20 20 H 1.08990 * 109.44233 * 333.86847 * 19 17 2 21 21 C 1.53044 * 109.44391 * 93.79921 * 19 17 2 22 22 C 1.53383 * 107.91831 * 167.33175 * 21 19 17 23 23 N 1.46433 * 108.64604 * 291.70957 * 22 21 19 24 24 C 1.46898 * 110.99914 * 178.88303 * 23 22 21 25 25 C 1.39412 * 113.12836 * 53.34117 * 23 22 21 26 26 C 1.39618 * 117.64909 * 160.11466 * 25 23 22 27 27 C 1.37808 * 120.41736 * 179.72441 * 26 25 23 28 28 C 1.38308 * 119.95349 * 359.97438 * 27 26 25 29 29 C 1.38056 * 119.89067 * 0.12350 * 28 27 26 30 30 C 1.38314 * 122.94347 * 339.98629 * 25 23 22 31 31 H 1.09001 * 109.47025 * 94.82880 * 1 2 3 32 32 H 1.08998 * 109.47287 * 214.82753 * 1 2 3 33 33 H 1.09001 * 109.47396 * 334.83391 * 1 2 3 34 34 H 1.08994 * 109.47173 * 334.67490 * 3 2 1 35 35 H 1.08998 * 109.47123 * 214.66804 * 3 2 1 36 36 H 1.09000 * 114.33088 * 105.66020 * 6 4 3 37 37 H 1.09006 * 114.20255 * 332.91773 * 6 4 3 38 38 H 1.09002 * 113.46880 * 271.11504 * 7 6 4 39 39 H 1.09007 * 113.46371 * 140.67599 * 7 6 4 40 40 H 0.97003 * 119.99431 * 1.01500 * 12 11 9 41 41 H 1.08993 * 109.76713 * 286.93838 * 21 19 17 42 42 H 1.08998 * 109.76894 * 47.72677 * 21 19 17 43 43 H 1.08991 * 109.61319 * 51.46156 * 22 21 19 44 44 H 1.09005 * 109.60496 * 171.79593 * 22 21 19 45 45 H 1.09002 * 109.47270 * 53.22119 * 24 23 22 46 46 H 1.08999 * 109.47471 * 173.21997 * 24 23 22 47 47 H 1.08996 * 109.47546 * 293.22126 * 24 23 22 48 48 H 1.07994 * 119.79203 * 359.69639 * 26 25 23 49 49 H 1.07995 * 120.02114 * 180.02562 * 27 26 25 50 50 H 1.08008 * 120.05847 * 180.09910 * 28 27 26 51 51 H 1.07996 * 119.75627 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5542 1.6517 1.4377 5 1 2.9631 0.8172 2.0076 6 6 1.4296 2.3953 2.1660 7 6 2.5875 3.2263 2.7359 8 7 3.3605 2.8778 1.5345 9 6 4.3789 3.4473 0.8176 10 1 4.6750 3.0229 -0.1304 11 6 5.0305 4.5699 1.3094 12 7 4.9191 4.8914 2.5808 13 14 6.0656 5.6245 0.1666 14 1 6.6504 6.7555 0.9310 15 1 7.1571 4.8015 -0.4133 16 1 5.2117 6.1554 -0.9262 17 6 2.1389 -1.1671 -0.0005 18 8 3.3483 -1.1691 0.0907 19 6 1.3897 -2.4697 -0.1146 20 1 0.3777 -2.3409 0.2690 21 6 1.3275 -2.8947 -1.5835 22 6 0.8524 -4.3523 -1.6333 23 7 1.9014 -5.2060 -1.0720 24 6 1.4881 -6.6156 -1.0703 25 6 2.3130 -4.8046 0.1980 26 6 2.9701 -5.7451 0.9936 27 6 3.4065 -5.4077 2.2564 28 6 3.1945 -4.1301 2.7420 29 6 2.5435 -3.1964 1.9607 30 6 2.1001 -3.5294 0.6896 31 1 -0.3633 -0.0865 -1.0240 32 1 -0.3634 -0.8436 0.5869 33 1 -0.3634 0.9301 0.4370 34 1 1.5747 2.0479 -0.4396 35 1 3.1111 1.1609 -0.5845 36 1 0.9020 1.7960 2.9080 37 1 0.7620 2.9513 1.5076 38 1 3.0052 2.8156 3.6552 39 1 2.3614 4.2899 2.8133 40 1 4.3935 4.3355 3.1773 41 1 0.6244 -2.2591 -2.1217 42 1 2.3172 -2.8139 -2.0329 43 1 -0.0598 -4.4600 -1.0467 44 1 0.6584 -4.6386 -2.6671 45 1 1.1710 -6.9025 -2.0729 46 1 2.3268 -7.2399 -0.7620 47 1 0.6598 -6.7506 -0.3748 48 1 3.1370 -6.7434 0.6171 49 1 3.9145 -6.1402 2.8662 50 1 3.5372 -3.8634 3.7309 51 1 2.3787 -2.1996 2.3422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085646441.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:54 Heat of formation + Delta-G solvation = 71.935815 kcal Electronic energy + Delta-G solvation = -31007.049151 eV Core-core repulsion = 27101.777794 eV Total energy + Delta-G solvation = -3905.271357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.15476 -39.50714 -38.15393 -36.99572 -35.23840 -34.47847 -32.32214 -30.53195 -29.99300 -29.05554 -27.69716 -27.44243 -26.19050 -24.67946 -23.49954 -23.33316 -22.72724 -21.68007 -19.94305 -19.25707 -18.91656 -17.52881 -17.23766 -17.02871 -16.41634 -15.93154 -15.77367 -15.30720 -14.74631 -14.55283 -14.29471 -14.06649 -13.95245 -13.72466 -13.51744 -13.41705 -13.25868 -13.10367 -12.99556 -12.64558 -12.49467 -12.38420 -12.15915 -12.14176 -11.95077 -11.50335 -11.45007 -11.17921 -11.04547 -10.73330 -10.67737 -10.55549 -10.46704 -10.04038 -9.97069 -9.80529 -9.48514 -9.25526 -8.77824 -8.57195 -8.33087 -7.82871 -6.93611 -6.06068 -3.05943 1.30212 1.37569 2.76574 3.11397 3.37968 3.52982 3.56568 3.74051 3.77715 4.26560 4.46618 4.58554 4.59302 4.63633 4.76034 4.91671 5.00883 5.02126 5.07341 5.09052 5.10883 5.18117 5.26077 5.30170 5.34443 5.36369 5.42346 5.46750 5.48310 5.51863 5.62069 5.67398 5.76062 5.87165 5.92338 5.95572 6.05128 6.06888 6.20266 6.35110 6.37178 6.46137 6.56530 6.58552 6.65097 6.74267 6.80486 6.81282 7.14350 7.21275 7.38467 7.56791 8.38527 8.39731 8.99957 9.85133 10.58319 11.37756 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.002772 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.299589 B =10097.577604 C =10401.431413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.612 5.612 3 C 0.120 3.880 4 C 0.136 3.864 5 H 0.043 0.957 6 C -0.160 4.160 7 C 0.131 3.869 8 N -0.608 5.608 9 C -0.312 4.312 10 H 0.074 0.926 11 C -0.035 4.035 12 N -0.938 5.938 13 Si 1.079 2.921 14 H -0.284 1.284 15 H -0.293 1.293 16 H -0.293 1.293 17 C 0.515 3.485 18 O -0.517 6.517 19 C -0.065 4.065 20 H 0.099 0.901 21 C -0.110 4.110 22 C 0.061 3.939 23 N -0.498 5.498 24 C 0.025 3.975 25 C 0.132 3.868 26 C -0.167 4.167 27 C -0.092 4.092 28 C -0.148 4.148 29 C -0.068 4.068 30 C -0.107 4.107 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.030 0.970 39 H 0.051 0.949 40 H 0.266 0.734 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.048 0.952 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.038 0.962 48 H 0.125 0.875 49 H 0.121 0.879 50 H 0.121 0.879 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.401 -22.530 -5.829 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C -0.002 4.002 4 C 0.028 3.972 5 H 0.060 0.940 6 C -0.198 4.198 7 C 0.005 3.995 8 N -0.335 5.335 9 C -0.439 4.439 10 H 0.092 0.908 11 C -0.234 4.234 12 N -0.581 5.581 13 Si 0.908 3.092 14 H -0.210 1.210 15 H -0.221 1.221 16 H -0.221 1.221 17 C 0.301 3.699 18 O -0.392 6.392 19 C -0.087 4.087 20 H 0.117 0.883 21 C -0.148 4.148 22 C -0.065 4.065 23 N -0.212 5.212 24 C -0.121 4.121 25 C 0.034 3.966 26 C -0.188 4.188 27 C -0.111 4.111 28 C -0.167 4.167 29 C -0.086 4.086 30 C -0.110 4.110 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.096 0.904 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.057 0.943 48 H 0.143 0.857 49 H 0.139 0.861 50 H 0.139 0.861 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.208 -21.007 -6.426 25.633 hybrid contribution -1.350 -1.459 0.654 2.093 sum -14.558 -22.466 -5.772 27.386 Atomic orbital electron populations 1.21839 0.80129 1.03297 1.01350 1.47922 1.06670 1.06415 1.73583 1.21780 0.96744 0.82588 0.99137 1.22270 0.90466 0.91112 0.93361 0.93955 1.23594 0.96554 0.99688 0.99974 1.22122 0.88687 0.98039 0.90632 1.45944 1.40272 1.18618 1.28666 1.19767 1.12102 1.11162 1.00891 0.90844 1.25816 1.00383 0.98400 0.98837 1.70776 1.41445 1.43095 1.02783 0.83297 0.75466 0.76215 0.74187 1.20997 1.22059 1.22078 1.20293 0.88069 0.84632 0.76905 1.90779 1.13923 1.86780 1.47686 1.20324 0.99648 0.91833 0.96857 0.88284 1.21631 1.03856 0.95211 0.94071 1.22145 0.91611 0.92326 1.00420 1.58070 1.38395 1.04291 1.20418 1.22532 1.00371 0.87046 1.02180 1.18452 0.97511 0.93316 0.87340 1.21044 1.03524 0.99227 0.94976 1.20918 0.98406 0.96448 0.95315 1.20987 1.01546 0.93692 1.00508 1.20964 0.95815 0.98916 0.92955 1.18968 1.03969 0.93042 0.95059 0.92793 0.91534 0.90387 0.90337 0.90376 0.92521 0.90391 0.95220 0.93058 0.92221 0.89868 0.89673 0.93376 0.89274 0.90661 0.90273 0.94310 0.85695 0.86077 0.86076 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 10.03 59.85 0.60 1.34 16 2 N -0.61 -8.93 2.88 -181.57 -0.52 -9.45 16 3 C 0.12 2.24 5.23 -4.04 -0.02 2.22 16 4 C 0.14 2.91 4.28 -72.54 -0.31 2.60 16 5 H 0.04 1.01 8.14 -51.93 -0.42 0.58 16 6 C -0.16 -2.94 7.95 -26.36 -0.21 -3.15 16 7 C 0.13 3.10 6.11 -8.52 -0.05 3.05 16 8 N -0.61 -16.12 3.57 -177.19 -0.63 -16.75 16 9 C -0.31 -9.22 10.48 -15.06 -0.16 -9.38 16 10 H 0.07 2.15 7.89 -52.48 -0.41 1.74 16 11 C -0.04 -1.05 5.46 -17.44 -0.10 -1.15 16 12 N -0.94 -29.88 13.45 55.49 0.75 -29.13 16 13 Si 1.08 26.58 29.95 -169.99 -5.09 21.48 16 14 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 15 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 C 0.51 8.21 5.63 -10.99 -0.06 8.15 16 18 O -0.52 -10.96 15.55 5.56 0.09 -10.87 16 19 C -0.07 -0.78 2.22 -92.85 -0.21 -0.99 16 20 H 0.10 0.94 5.77 -51.93 -0.30 0.64 16 21 C -0.11 -1.11 5.49 -26.51 -0.15 -1.26 16 22 C 0.06 0.51 5.48 -3.88 -0.02 0.49 16 23 N -0.50 -5.09 4.78 -179.14 -0.86 -5.95 16 24 C 0.02 0.17 8.90 60.06 0.53 0.71 16 25 C 0.13 1.63 5.82 -83.87 -0.49 1.14 16 26 C -0.17 -1.88 9.02 -39.22 -0.35 -2.24 16 27 C -0.09 -1.04 10.03 -39.71 -0.40 -1.44 16 28 C -0.15 -1.90 10.05 -39.62 -0.40 -2.30 16 29 C -0.07 -0.97 8.56 -39.49 -0.34 -1.31 16 30 C -0.11 -1.45 5.06 -104.38 -0.53 -1.98 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.51 6.13 -51.93 -0.32 0.19 16 33 H 0.08 0.72 7.99 -51.93 -0.41 0.31 16 34 H 0.08 1.36 7.79 -51.93 -0.40 0.95 16 35 H 0.08 1.71 7.64 -51.93 -0.40 1.31 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.33 7.95 -51.93 -0.41 0.92 16 38 H 0.03 0.72 8.00 -51.93 -0.42 0.31 16 39 H 0.05 1.28 7.84 -51.92 -0.41 0.88 16 40 H 0.27 8.38 5.57 -40.82 -0.23 8.16 16 41 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 43 H 0.05 0.35 8.11 -51.93 -0.42 -0.07 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 46 H 0.08 0.51 6.08 -51.93 -0.32 0.20 16 47 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 48 H 0.13 1.11 5.89 -52.49 -0.31 0.80 16 49 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 50 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 51 H 0.12 1.79 7.39 -52.49 -0.39 1.40 16 LS Contribution 398.53 15.07 6.01 6.01 Total: -1.00 -37.55 398.53 -11.08 -48.63 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -8.16 Total: 1.53 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: -2.65 Total: -5.50 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -1.27 Total: -61.28 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 26.58 SS G_CDS: -5.09 Total: 21.48 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.55 -11.08 -48.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646441.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.569 kcal (2) G-P(sol) polarization free energy of solvation -37.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds