Wall clock time and date at job start Wed Apr 1 2020 01:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46508 * 119.99714 * 2 1 4 4 C 1.53001 * 109.46830 * 94.67387 * 3 2 1 5 5 H 1.09005 * 112.77722 * 45.94456 * 4 3 2 6 6 C 1.53229 * 113.38499 * 275.23441 * 4 3 2 7 7 C 1.53497 * 83.42989 * 219.29146 * 6 4 3 8 8 N 1.47057 * 87.98499 * 25.89819 * 7 6 4 9 9 C 1.36941 * 136.05844 * 152.84635 * 8 7 6 10 10 H 1.08005 * 120.00021 * 188.49415 * 9 8 7 11 11 C 1.38803 * 119.99850 * 8.49380 * 9 8 7 12 12 N 1.31615 * 120.00506 * 17.03479 * 11 9 8 13 13 Si 1.86809 * 119.99923 * 197.03775 * 11 9 8 14 14 H 1.48503 * 109.46995 * 179.97438 * 13 11 9 15 15 H 1.48492 * 109.46974 * 299.99826 * 13 11 9 16 16 H 1.48502 * 109.47015 * 60.00077 * 13 11 9 17 17 C 1.34771 * 120.00337 * 180.02562 * 2 1 3 18 18 O 1.21280 * 120.00330 * 184.98489 * 17 2 1 19 19 C 1.50701 * 119.99619 * 4.98797 * 17 2 1 20 20 H 1.08990 * 109.44233 * 333.86847 * 19 17 2 21 21 C 1.53044 * 109.44391 * 93.79921 * 19 17 2 22 22 C 1.53383 * 107.91831 * 167.33175 * 21 19 17 23 23 N 1.46433 * 108.64604 * 291.70957 * 22 21 19 24 24 C 1.46898 * 110.99914 * 178.88303 * 23 22 21 25 25 C 1.39412 * 113.12836 * 53.34117 * 23 22 21 26 26 C 1.39618 * 117.64909 * 160.11466 * 25 23 22 27 27 C 1.37808 * 120.41736 * 179.72441 * 26 25 23 28 28 C 1.38308 * 119.95349 * 359.97438 * 27 26 25 29 29 C 1.38056 * 119.89067 * 0.12350 * 28 27 26 30 30 C 1.38314 * 122.94347 * 339.98629 * 25 23 22 31 31 H 1.09001 * 109.47025 * 94.82880 * 1 2 3 32 32 H 1.08998 * 109.47287 * 214.82753 * 1 2 3 33 33 H 1.09001 * 109.47396 * 334.83391 * 1 2 3 34 34 H 1.08994 * 109.47173 * 334.67490 * 3 2 1 35 35 H 1.08998 * 109.47123 * 214.66804 * 3 2 1 36 36 H 1.09000 * 114.33088 * 105.66020 * 6 4 3 37 37 H 1.09006 * 114.20255 * 332.91773 * 6 4 3 38 38 H 1.09002 * 113.46880 * 271.11504 * 7 6 4 39 39 H 1.09007 * 113.46371 * 140.67599 * 7 6 4 40 40 H 0.97003 * 119.99431 * 1.01500 * 12 11 9 41 41 H 1.08993 * 109.76713 * 286.93838 * 21 19 17 42 42 H 1.08998 * 109.76894 * 47.72677 * 21 19 17 43 43 H 1.08991 * 109.61319 * 51.46156 * 22 21 19 44 44 H 1.09005 * 109.60496 * 171.79593 * 22 21 19 45 45 H 1.09002 * 109.47270 * 53.22119 * 24 23 22 46 46 H 1.08999 * 109.47471 * 173.21997 * 24 23 22 47 47 H 1.08996 * 109.47546 * 293.22126 * 24 23 22 48 48 H 1.07994 * 119.79203 * 359.69639 * 26 25 23 49 49 H 1.07995 * 120.02114 * 180.02562 * 27 26 25 50 50 H 1.08008 * 120.05847 * 180.09910 * 28 27 26 51 51 H 1.07996 * 119.75627 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.5542 1.6517 1.4377 5 1 2.9631 0.8172 2.0076 6 6 1.4296 2.3953 2.1660 7 6 2.5875 3.2263 2.7359 8 7 3.3605 2.8778 1.5345 9 6 4.3789 3.4473 0.8176 10 1 4.6750 3.0229 -0.1304 11 6 5.0305 4.5699 1.3094 12 7 4.9191 4.8914 2.5808 13 14 6.0656 5.6245 0.1666 14 1 6.6504 6.7555 0.9310 15 1 7.1571 4.8015 -0.4133 16 1 5.2117 6.1554 -0.9262 17 6 2.1389 -1.1671 -0.0005 18 8 3.3483 -1.1691 0.0907 19 6 1.3897 -2.4697 -0.1146 20 1 0.3777 -2.3409 0.2690 21 6 1.3275 -2.8947 -1.5835 22 6 0.8524 -4.3523 -1.6333 23 7 1.9014 -5.2060 -1.0720 24 6 1.4881 -6.6156 -1.0703 25 6 2.3130 -4.8046 0.1980 26 6 2.9701 -5.7451 0.9936 27 6 3.4065 -5.4077 2.2564 28 6 3.1945 -4.1301 2.7420 29 6 2.5435 -3.1964 1.9607 30 6 2.1001 -3.5294 0.6896 31 1 -0.3633 -0.0865 -1.0240 32 1 -0.3634 -0.8436 0.5869 33 1 -0.3634 0.9301 0.4370 34 1 1.5747 2.0479 -0.4396 35 1 3.1111 1.1609 -0.5845 36 1 0.9020 1.7960 2.9080 37 1 0.7620 2.9513 1.5076 38 1 3.0052 2.8156 3.6552 39 1 2.3614 4.2899 2.8133 40 1 4.3935 4.3355 3.1773 41 1 0.6244 -2.2591 -2.1217 42 1 2.3172 -2.8139 -2.0329 43 1 -0.0598 -4.4600 -1.0467 44 1 0.6584 -4.6386 -2.6671 45 1 1.1710 -6.9025 -2.0729 46 1 2.3268 -7.2399 -0.7620 47 1 0.6598 -6.7506 -0.3748 48 1 3.1370 -6.7434 0.6171 49 1 3.9145 -6.1402 2.8662 50 1 3.5372 -3.8634 3.7309 51 1 2.3787 -2.1996 2.3422 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085646441.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:53 Heat of formation + Delta-G solvation = 47.038109 kcal Electronic energy + Delta-G solvation = -31008.128797 eV Core-core repulsion = 27101.777794 eV Total energy + Delta-G solvation = -3906.351003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.11447 -40.79646 -39.79955 -37.80711 -36.55813 -35.41330 -34.49230 -31.36162 -30.92701 -30.32467 -29.71711 -28.34740 -27.22967 -25.58387 -25.38394 -24.33960 -24.15858 -22.73209 -21.19293 -20.84187 -20.02373 -19.40178 -18.26656 -18.18165 -17.33359 -17.10615 -16.72955 -16.55910 -16.27847 -15.85017 -15.62316 -15.41284 -15.32492 -15.05208 -14.90222 -14.45701 -14.36115 -14.11938 -13.94106 -13.89937 -13.49539 -13.38819 -13.19184 -13.09413 -12.87322 -12.79454 -12.70974 -12.60516 -12.44966 -12.31324 -12.23935 -12.00886 -11.91641 -11.52031 -11.49088 -11.35173 -10.81618 -10.78080 -10.71077 -9.73129 -9.67753 -9.09886 -8.63953 -8.43430 -5.38046 0.37383 0.44775 1.51778 1.55886 1.62497 1.79824 1.93432 2.59172 2.65142 2.88126 3.23308 3.25205 3.35945 3.57198 3.65643 3.76226 3.82342 3.97343 4.08274 4.12421 4.17804 4.20254 4.33029 4.34801 4.38641 4.44081 4.44721 4.53656 4.55858 4.59999 4.66753 4.69986 4.75050 4.79826 4.83180 4.85126 4.87704 4.92844 4.96026 4.99041 5.06141 5.11417 5.21705 5.23215 5.37087 5.46936 5.59728 5.62718 5.78895 6.08660 6.11922 6.30107 6.40968 6.68521 7.17646 7.58721 8.41190 9.03210 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.016048 B = 0.002772 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.299589 B =10097.577604 C =10401.431413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.607 5.607 3 C 0.137 3.863 4 C 0.134 3.866 5 H 0.013 0.987 6 C -0.116 4.116 7 C 0.122 3.878 8 N -0.640 5.640 9 C -0.319 4.319 10 H 0.065 0.935 11 C -0.092 4.092 12 N -0.969 5.969 13 Si 1.129 2.871 14 H -0.288 1.288 15 H -0.281 1.281 16 H -0.270 1.270 17 C 0.511 3.489 18 O -0.584 6.584 19 C -0.054 4.054 20 H 0.131 0.869 21 C -0.107 4.107 22 C 0.063 3.937 23 N -0.514 5.514 24 C 0.023 3.977 25 C 0.128 3.872 26 C -0.173 4.173 27 C -0.092 4.092 28 C -0.169 4.169 29 C -0.091 4.091 30 C -0.130 4.130 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.034 0.966 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.015 0.985 39 H 0.032 0.968 40 H 0.254 0.746 41 H 0.112 0.888 42 H 0.049 0.951 43 H 0.067 0.933 44 H 0.114 0.886 45 H 0.095 0.905 46 H 0.081 0.919 47 H 0.046 0.954 48 H 0.151 0.849 49 H 0.148 0.852 50 H 0.125 0.875 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.611 -24.555 -7.764 31.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.339 5.339 3 C 0.013 3.987 4 C 0.027 3.973 5 H 0.030 0.970 6 C -0.154 4.154 7 C -0.004 4.004 8 N -0.368 5.368 9 C -0.447 4.447 10 H 0.083 0.917 11 C -0.285 4.285 12 N -0.615 5.615 13 Si 0.952 3.048 14 H -0.214 1.214 15 H -0.207 1.207 16 H -0.195 1.195 17 C 0.299 3.701 18 O -0.463 6.463 19 C -0.075 4.075 20 H 0.149 0.851 21 C -0.145 4.145 22 C -0.063 4.063 23 N -0.227 5.227 24 C -0.122 4.122 25 C 0.028 3.972 26 C -0.193 4.193 27 C -0.111 4.111 28 C -0.188 4.188 29 C -0.110 4.110 30 C -0.134 4.134 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.052 0.948 36 H 0.113 0.887 37 H 0.122 0.878 38 H 0.033 0.967 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.130 0.870 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.132 0.868 45 H 0.114 0.886 46 H 0.100 0.900 47 H 0.065 0.935 48 H 0.168 0.832 49 H 0.166 0.834 50 H 0.143 0.857 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -16.516 -23.080 -8.384 29.593 hybrid contribution -0.346 -0.946 1.264 1.616 sum -16.862 -24.026 -7.120 30.204 Atomic orbital electron populations 1.22255 0.76282 1.05013 1.03949 1.47977 1.08824 1.04517 1.72606 1.21337 0.96004 0.85102 0.96302 1.22358 0.90648 0.88972 0.95365 0.96962 1.23383 0.94674 0.97638 0.99694 1.22224 0.90832 0.97700 0.89610 1.46362 1.40067 1.20917 1.29472 1.20034 1.12507 1.11245 1.00908 0.91699 1.27350 1.01770 0.99974 0.99389 1.70889 1.43100 1.43697 1.03789 0.82673 0.74654 0.74586 0.72924 1.21416 1.20731 1.19548 1.21110 0.87539 0.86162 0.75252 1.90744 1.17074 1.87779 1.50723 1.20360 1.00075 0.88800 0.98283 0.85136 1.21662 1.02833 0.97523 0.92468 1.22267 0.91516 0.90412 1.02089 1.58121 1.39484 1.06182 1.18903 1.22645 1.00772 0.85071 1.03739 1.18699 0.97203 0.93001 0.88249 1.21416 1.02817 1.00269 0.94797 1.21236 0.97861 0.96149 0.95829 1.21179 1.02144 0.94540 1.00937 1.20953 0.97579 0.98295 0.94209 1.19189 1.05011 0.94232 0.94948 0.89832 0.89088 0.89366 0.88355 0.94780 0.88698 0.87824 0.96698 0.95007 0.93515 0.86982 0.93181 0.91431 0.86778 0.88597 0.89995 0.93515 0.83187 0.83446 0.85653 0.88675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.01 10.03 127.77 1.28 2.29 16 2 N -0.61 -17.14 2.88 -846.76 -2.44 -19.58 16 3 C 0.14 5.14 5.23 86.38 0.45 5.59 16 4 C 0.13 5.86 4.28 41.70 0.18 6.04 16 5 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 6 C -0.12 -4.09 7.95 30.84 0.25 -3.84 16 7 C 0.12 5.93 6.11 83.17 0.51 6.44 16 8 N -0.64 -35.23 3.57 -714.52 -2.55 -37.78 16 9 C -0.32 -19.57 10.48 84.03 0.88 -18.69 16 10 H 0.07 3.97 7.89 -2.91 -0.02 3.95 16 11 C -0.09 -5.69 5.46 84.86 0.46 -5.23 16 12 N -0.97 -63.99 13.45 21.65 0.29 -63.70 16 13 Si 1.13 54.61 29.95 68.60 2.05 56.66 16 14 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 15 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 C 0.51 16.56 5.63 87.66 0.49 17.06 16 18 O -0.58 -26.52 15.55 -3.03 -0.05 -26.57 16 19 C -0.05 -1.24 2.22 -12.24 -0.03 -1.26 16 20 H 0.13 2.05 5.77 -2.39 -0.01 2.04 16 21 C -0.11 -1.93 5.49 30.74 0.17 -1.77 16 22 C 0.06 0.82 5.48 86.52 0.47 1.30 16 23 N -0.51 -9.22 4.78 -720.69 -3.44 -12.67 16 24 C 0.02 0.24 8.90 127.69 1.14 1.38 16 25 C 0.13 3.00 5.82 38.29 0.22 3.22 16 26 C -0.17 -3.64 9.02 22.50 0.20 -3.43 16 27 C -0.09 -2.02 10.03 22.18 0.22 -1.80 16 28 C -0.17 -4.50 10.05 22.24 0.22 -4.27 16 29 C -0.09 -2.76 8.56 22.33 0.19 -2.57 16 30 C -0.13 -3.51 5.06 -19.71 -0.10 -3.61 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.09 0.98 6.13 -2.39 -0.01 0.97 16 33 H 0.09 1.22 7.99 -2.39 -0.02 1.20 16 34 H 0.10 3.27 7.79 -2.39 -0.02 3.25 16 35 H 0.03 1.57 7.64 -2.39 -0.02 1.55 16 36 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.10 3.18 7.95 -2.38 -0.02 3.16 16 38 H 0.02 0.78 8.00 -2.39 -0.02 0.76 16 39 H 0.03 1.64 7.84 -2.38 -0.02 1.62 16 40 H 0.25 16.82 5.57 -92.71 -0.52 16.30 16 41 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.05 1.27 8.09 -2.39 -0.02 1.25 16 43 H 0.07 0.67 8.11 -2.39 -0.02 0.65 16 44 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 45 H 0.10 0.63 8.11 -2.39 -0.02 0.61 16 46 H 0.08 0.81 6.08 -2.39 -0.01 0.80 16 47 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 48 H 0.15 2.29 5.89 -2.91 -0.02 2.27 16 49 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 50 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 51 H 0.10 3.17 7.39 -2.91 -0.02 3.15 16 Total: -1.00 -90.15 398.53 2.25 -87.90 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 1.17 Total: 18.90 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 7.22 Total: -3.17 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -8.15 Total: -133.72 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.05 Total: -26.57 kcal Atomic # 14 Polarization: 54.61 SS G_CDS: 2.05 Total: 56.66 kcal Total: -90.15 2.25 -87.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646441.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.938 kcal (2) G-P(sol) polarization free energy of solvation -90.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds