Wall clock time and date at job start Wed Apr 1 2020 01:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99994 * 2 1 4 4 C 1.52997 * 109.46931 * 275.66066 * 3 2 1 5 5 H 1.08997 * 112.97050 * 54.62618 * 4 3 2 6 6 C 1.53948 * 113.76640 * 186.30543 * 4 3 2 7 7 C 1.53947 * 86.29113 * 137.90881 * 6 4 3 8 8 N 1.47576 * 86.11413 * 336.39275 * 7 6 4 9 9 C 1.36941 * 134.48983 * 204.64346 * 8 7 6 10 10 H 1.08007 * 119.99893 * 216.01508 * 9 8 7 11 11 C 1.38815 * 120.00213 * 36.01583 * 9 8 7 12 12 N 1.31613 * 120.00127 * 213.84228 * 11 9 8 13 13 Si 1.86798 * 119.99881 * 33.83878 * 11 9 8 14 14 H 1.48499 * 109.47089 * 93.51670 * 13 11 9 15 15 H 1.48493 * 109.47249 * 213.52040 * 13 11 9 16 16 H 1.48497 * 109.47321 * 333.51993 * 13 11 9 17 17 C 1.34772 * 119.99743 * 179.97438 * 2 1 3 18 18 O 1.21280 * 120.00100 * 185.32321 * 17 2 1 19 19 C 1.50710 * 120.00188 * 5.32200 * 17 2 1 20 20 H 1.08997 * 109.40477 * 333.99591 * 19 17 2 21 21 C 1.53042 * 109.43570 * 93.89048 * 19 17 2 22 22 C 1.53385 * 107.97845 * 167.33664 * 21 19 17 23 23 N 1.46407 * 108.66932 * 291.86453 * 22 21 19 24 24 C 1.46899 * 111.00627 * 178.89364 * 23 22 21 25 25 C 1.39412 * 113.16394 * 53.31898 * 23 22 21 26 26 C 1.39607 * 117.65091 * 160.19750 * 25 23 22 27 27 C 1.37811 * 120.41987 * 179.30881 * 26 25 23 28 28 C 1.38303 * 119.94970 * 0.02562 * 27 26 25 29 29 C 1.38058 * 119.89371 * 0.13777 * 28 27 26 30 30 C 1.38378 * 122.95137 * 339.74592 * 25 23 22 31 31 H 1.08998 * 109.47333 * 264.17711 * 1 2 3 32 32 H 1.09006 * 109.46609 * 24.17541 * 1 2 3 33 33 H 1.08998 * 109.47217 * 144.17669 * 1 2 3 34 34 H 1.08999 * 109.47097 * 35.66201 * 3 2 1 35 35 H 1.09000 * 109.46768 * 155.66150 * 3 2 1 36 36 H 1.09014 * 113.73763 * 252.25226 * 6 4 3 37 37 H 1.08996 * 113.74675 * 23.45268 * 6 4 3 38 38 H 1.09000 * 113.76746 * 90.68948 * 7 6 4 39 39 H 1.08997 * 113.76815 * 221.97642 * 7 6 4 40 40 H 0.96999 * 120.00306 * 179.97438 * 12 11 9 41 41 H 1.08996 * 109.77553 * 286.97474 * 21 19 17 42 42 H 1.09003 * 109.77017 * 47.70463 * 21 19 17 43 43 H 1.08998 * 109.60120 * 51.56437 * 22 21 19 44 44 H 1.09000 * 109.60343 * 172.05786 * 22 21 19 45 45 H 1.09007 * 109.47134 * 285.18247 * 24 23 22 46 46 H 1.09007 * 109.46901 * 45.17440 * 24 23 22 47 47 H 1.08991 * 109.47432 * 165.18036 * 24 23 22 48 48 H 1.08008 * 119.79006 * 359.29029 * 26 25 23 49 49 H 1.08006 * 120.02209 * 179.97438 * 27 26 25 50 50 H 1.07999 * 120.05491 * 180.11688 * 28 27 26 51 51 H 1.07994 * 119.75926 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3293 1.7815 -1.4355 5 1 1.3703 1.8664 -1.9465 6 6 3.2161 3.0328 -1.5683 7 6 3.8024 2.3616 -2.8236 8 7 3.3660 1.0862 -2.2227 9 6 3.7635 -0.2184 -2.3461 10 1 3.0319 -1.0119 -2.3065 11 6 5.1068 -0.5210 -2.5219 12 7 5.4579 -1.5499 -3.2639 13 14 6.4161 0.5319 -1.7056 14 1 6.7857 -0.0643 -0.3968 15 1 7.6162 0.5941 -2.5779 16 1 5.8871 1.9031 -1.4932 17 6 2.1389 -1.1672 0.0005 18 8 3.3477 -1.1695 0.0980 19 6 1.3902 -2.4696 -0.1200 20 1 0.3756 -2.3403 0.2568 21 6 1.3375 -2.8926 -1.5898 22 6 0.8626 -4.3500 -1.6463 23 7 1.9055 -5.2052 -1.0766 24 6 1.4916 -6.6146 -1.0813 25 6 2.3062 -4.8065 0.1978 26 6 2.9568 -5.7485 0.9967 27 6 3.3900 -5.4113 2.2608 28 6 3.1802 -4.1327 2.7444 29 6 2.5344 -3.1978 1.9602 30 6 2.0945 -3.5300 0.6883 31 1 -0.3634 -0.1043 1.0223 32 1 -0.3633 0.9376 -0.4209 33 1 -0.3633 -0.8332 -0.6015 34 1 1.6561 2.0008 0.5991 35 1 3.1901 1.1151 0.4235 36 1 2.6584 3.9456 -1.7787 37 1 3.9333 3.1508 -0.7561 38 1 3.2768 2.6161 -3.7439 39 1 4.8843 2.4610 -2.9102 40 1 6.3966 -1.7611 -3.3871 41 1 0.6384 -2.2559 -2.1320 42 1 2.3301 -2.8109 -2.0328 43 1 -0.0547 -4.4584 -1.0676 44 1 0.6801 -4.6353 -2.6824 45 1 0.7561 -6.7800 -0.2940 46 1 1.0510 -6.8607 -2.0475 47 1 2.3603 -7.2490 -0.9060 48 1 3.1214 -6.7480 0.6219 49 1 3.8923 -6.1453 2.8735 50 1 3.5207 -3.8661 3.7340 51 1 2.3713 -2.2002 2.3402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085646442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:57 Heat of formation + Delta-G solvation = 82.996583 kcal Electronic energy + Delta-G solvation = -32608.503735 eV Core-core repulsion = 28703.712008 eV Total energy + Delta-G solvation = -3904.791727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.68582 -39.06283 -37.67809 -36.60515 -34.74072 -33.94435 -32.04564 -30.09820 -29.65098 -28.93486 -28.07023 -27.09286 -25.89130 -24.32576 -23.14050 -22.91667 -22.60462 -21.43896 -19.54291 -18.88066 -18.44962 -17.12437 -16.81095 -16.54396 -15.98758 -15.52390 -15.32162 -15.08942 -14.67032 -14.31488 -14.08249 -13.88355 -13.65376 -13.45423 -13.05303 -12.92724 -12.85298 -12.77373 -12.47873 -12.28717 -12.16608 -12.01720 -11.95036 -11.73758 -11.45002 -11.43032 -11.08893 -10.94682 -10.89602 -10.66448 -10.57216 -10.29270 -10.17714 -10.09567 -9.79410 -9.60712 -9.23593 -8.83359 -8.40621 -8.17928 -7.88242 -7.40065 -6.56086 -5.81587 -3.03975 1.67515 1.73401 3.43036 3.59713 3.62641 3.70860 3.76680 3.81630 4.13322 4.75789 4.80912 4.92020 4.96581 5.06119 5.15196 5.22639 5.32445 5.34191 5.37961 5.45742 5.46828 5.48351 5.52260 5.56028 5.59101 5.65843 5.73419 5.81117 5.82628 5.88329 5.89527 5.92824 5.99313 6.03419 6.13631 6.27251 6.30840 6.31286 6.42642 6.53383 6.66320 6.70794 6.74812 6.80166 6.86671 7.03622 7.14292 7.23837 7.27583 7.54390 7.75768 8.07883 8.53181 9.01229 9.10095 9.93101 10.68177 11.35608 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.004754 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.434252 B = 5887.970004 C = 6404.807721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.620 5.620 3 C 0.121 3.879 4 C 0.117 3.883 5 H 0.048 0.952 6 C -0.150 4.150 7 C 0.108 3.892 8 N -0.601 5.601 9 C -0.218 4.218 10 H 0.078 0.922 11 C 0.058 3.942 12 N -0.885 5.885 13 Si 0.849 3.151 14 H -0.291 1.291 15 H -0.306 1.306 16 H -0.262 1.262 17 C 0.516 3.484 18 O -0.469 6.469 19 C -0.060 4.060 20 H 0.086 0.914 21 C -0.113 4.113 22 C 0.065 3.935 23 N -0.493 5.493 24 C 0.028 3.972 25 C 0.141 3.859 26 C -0.167 4.167 27 C -0.096 4.096 28 C -0.155 4.155 29 C -0.070 4.070 30 C -0.098 4.098 31 H 0.045 0.955 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.074 0.926 38 H 0.035 0.965 39 H 0.048 0.952 40 H 0.259 0.741 41 H 0.077 0.923 42 H 0.106 0.894 43 H 0.041 0.959 44 H 0.087 0.913 45 H 0.036 0.964 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.122 0.878 49 H 0.117 0.883 50 H 0.116 0.884 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.267 -3.740 8.626 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.356 5.356 3 C -0.002 4.002 4 C 0.010 3.990 5 H 0.066 0.934 6 C -0.189 4.189 7 C -0.017 4.017 8 N -0.329 5.329 9 C -0.344 4.344 10 H 0.096 0.904 11 C -0.144 4.144 12 N -0.525 5.525 13 Si 0.678 3.322 14 H -0.219 1.219 15 H -0.234 1.234 16 H -0.187 1.187 17 C 0.302 3.698 18 O -0.339 6.339 19 C -0.081 4.081 20 H 0.104 0.896 21 C -0.151 4.151 22 C -0.062 4.062 23 N -0.206 5.206 24 C -0.118 4.118 25 C 0.042 3.958 26 C -0.188 4.188 27 C -0.115 4.115 28 C -0.174 4.174 29 C -0.088 4.088 30 C -0.102 4.102 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.124 0.876 43 H 0.059 0.941 44 H 0.105 0.895 45 H 0.055 0.945 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.140 0.860 49 H 0.135 0.865 50 H 0.134 0.866 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.036 -4.102 8.184 15.930 hybrid contribution 0.349 0.552 0.755 0.998 sum -12.687 -3.550 8.939 15.921 Atomic orbital electron populations 1.21648 0.81213 1.02626 1.00488 1.47606 1.05626 1.06216 1.76145 1.21689 0.97627 0.83594 0.97314 1.22860 0.93922 0.90685 0.91573 0.93437 1.23618 0.99418 0.96031 0.99832 1.22798 0.98392 0.86816 0.93690 1.45962 1.38799 1.03023 1.45131 1.18179 0.91041 0.79990 1.45209 0.90425 1.25240 0.96886 0.95069 0.97178 1.70009 1.16735 1.30771 1.34975 0.87253 0.81815 0.82048 0.81064 1.21890 1.23374 1.18671 1.19926 0.88085 0.84003 0.77819 1.90841 1.13046 1.85994 1.43977 1.20223 0.98634 0.92375 0.96884 0.89586 1.21724 1.05461 0.93997 0.93915 1.22151 0.91013 0.93058 0.99938 1.57920 1.39004 1.04014 1.19668 1.22484 1.00286 0.87403 1.01631 1.18498 0.96986 0.93339 0.86996 1.20989 1.03649 0.99247 0.94937 1.20824 0.98833 0.96407 0.95413 1.20862 1.02452 0.93870 1.00255 1.20844 0.96328 0.98507 0.93156 1.19016 1.03392 0.93019 0.94761 0.93617 0.91375 0.91897 0.92184 0.89512 0.92883 0.90694 0.94703 0.93397 0.93147 0.90487 0.87560 0.94078 0.89473 0.94494 0.90823 0.90624 0.85972 0.86460 0.86604 0.86774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 9.82 59.85 0.59 1.59 16 2 N -0.62 -10.56 2.87 -181.57 -0.52 -11.08 16 3 C 0.12 2.17 5.36 -4.04 -0.02 2.15 16 4 C 0.12 2.25 4.54 -66.87 -0.30 1.94 16 5 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 6 C -0.15 -2.70 7.86 -25.80 -0.20 -2.90 16 7 C 0.11 2.34 7.80 -2.98 -0.02 2.32 16 8 N -0.60 -14.68 2.92 -170.78 -0.50 -15.18 16 9 C -0.22 -6.20 7.73 -15.06 -0.12 -6.32 16 10 H 0.08 2.33 4.73 -52.48 -0.25 2.08 16 11 C 0.06 1.76 5.44 -17.43 -0.09 1.67 16 12 N -0.88 -28.34 13.97 55.49 0.78 -27.56 16 13 Si 0.85 23.80 27.30 -169.99 -4.64 19.16 16 14 H -0.29 -8.60 7.11 56.52 0.40 -8.20 16 15 H -0.31 -8.64 7.11 56.52 0.40 -8.23 16 16 H -0.26 -6.85 5.45 56.52 0.31 -6.54 16 17 C 0.52 10.28 3.86 -10.98 -0.04 10.24 16 18 O -0.47 -11.88 12.92 5.56 0.07 -11.81 16 19 C -0.06 -1.01 1.91 -92.85 -0.18 -1.18 16 20 H 0.09 1.18 6.29 -51.93 -0.33 0.85 16 21 C -0.11 -1.95 5.03 -26.51 -0.13 -2.09 16 22 C 0.06 0.91 5.43 -3.89 -0.02 0.89 16 23 N -0.49 -7.78 4.77 -179.14 -0.86 -8.63 16 24 C 0.03 0.32 8.74 60.06 0.53 0.85 16 25 C 0.14 2.40 5.79 -83.85 -0.49 1.92 16 26 C -0.17 -2.56 9.03 -39.23 -0.35 -2.92 16 27 C -0.10 -1.39 10.03 -39.71 -0.40 -1.79 16 28 C -0.16 -2.38 10.05 -39.62 -0.40 -2.78 16 29 C -0.07 -1.19 8.55 -39.51 -0.34 -1.53 16 30 C -0.10 -1.75 5.07 -104.38 -0.53 -2.28 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 33 H 0.06 0.70 6.24 -51.93 -0.32 0.38 16 34 H 0.06 0.85 8.11 -51.93 -0.42 0.43 16 35 H 0.09 1.86 7.20 -51.93 -0.37 1.49 16 36 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.05 1.12 5.47 -51.93 -0.28 0.83 16 40 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 41 H 0.08 1.20 7.85 -51.93 -0.41 0.79 16 42 H 0.11 2.47 6.66 -51.93 -0.35 2.12 16 43 H 0.04 0.50 8.11 -51.93 -0.42 0.07 16 44 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 45 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 46 H 0.07 0.72 7.99 -51.93 -0.41 0.30 16 47 H 0.08 0.82 6.56 -51.93 -0.34 0.48 16 48 H 0.12 1.59 6.07 -52.48 -0.32 1.27 16 49 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 50 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 51 H 0.11 1.92 7.38 -52.49 -0.39 1.53 16 LS Contribution 384.42 15.07 5.79 5.79 Total: -1.00 -36.69 384.42 -10.46 -47.15 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -8.06 Total: 2.39 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -2.53 Total: -0.21 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -1.10 Total: -62.46 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.07 Total: -11.81 kcal Atomic # 14 Polarization: 23.80 SS G_CDS: -4.64 Total: 19.16 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.69 -10.46 -47.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.145 kcal (2) G-P(sol) polarization free energy of solvation -36.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds