Wall clock time and date at job start Wed Apr 1 2020 01:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46499 * 119.99994 * 2 1 4 4 C 1.52997 * 109.46931 * 275.66066 * 3 2 1 5 5 H 1.08997 * 112.97050 * 54.62618 * 4 3 2 6 6 C 1.53948 * 113.76640 * 186.30543 * 4 3 2 7 7 C 1.53947 * 86.29113 * 137.90881 * 6 4 3 8 8 N 1.47576 * 86.11413 * 336.39275 * 7 6 4 9 9 C 1.36941 * 134.48983 * 204.64346 * 8 7 6 10 10 H 1.08007 * 119.99893 * 216.01508 * 9 8 7 11 11 C 1.38815 * 120.00213 * 36.01583 * 9 8 7 12 12 N 1.31613 * 120.00127 * 213.84228 * 11 9 8 13 13 Si 1.86798 * 119.99881 * 33.83878 * 11 9 8 14 14 H 1.48499 * 109.47089 * 93.51670 * 13 11 9 15 15 H 1.48493 * 109.47249 * 213.52040 * 13 11 9 16 16 H 1.48497 * 109.47321 * 333.51993 * 13 11 9 17 17 C 1.34772 * 119.99743 * 179.97438 * 2 1 3 18 18 O 1.21280 * 120.00100 * 185.32321 * 17 2 1 19 19 C 1.50710 * 120.00188 * 5.32200 * 17 2 1 20 20 H 1.08997 * 109.40477 * 333.99591 * 19 17 2 21 21 C 1.53042 * 109.43570 * 93.89048 * 19 17 2 22 22 C 1.53385 * 107.97845 * 167.33664 * 21 19 17 23 23 N 1.46407 * 108.66932 * 291.86453 * 22 21 19 24 24 C 1.46899 * 111.00627 * 178.89364 * 23 22 21 25 25 C 1.39412 * 113.16394 * 53.31898 * 23 22 21 26 26 C 1.39607 * 117.65091 * 160.19750 * 25 23 22 27 27 C 1.37811 * 120.41987 * 179.30881 * 26 25 23 28 28 C 1.38303 * 119.94970 * 0.02562 * 27 26 25 29 29 C 1.38058 * 119.89371 * 0.13777 * 28 27 26 30 30 C 1.38378 * 122.95137 * 339.74592 * 25 23 22 31 31 H 1.08998 * 109.47333 * 264.17711 * 1 2 3 32 32 H 1.09006 * 109.46609 * 24.17541 * 1 2 3 33 33 H 1.08998 * 109.47217 * 144.17669 * 1 2 3 34 34 H 1.08999 * 109.47097 * 35.66201 * 3 2 1 35 35 H 1.09000 * 109.46768 * 155.66150 * 3 2 1 36 36 H 1.09014 * 113.73763 * 252.25226 * 6 4 3 37 37 H 1.08996 * 113.74675 * 23.45268 * 6 4 3 38 38 H 1.09000 * 113.76746 * 90.68948 * 7 6 4 39 39 H 1.08997 * 113.76815 * 221.97642 * 7 6 4 40 40 H 0.96999 * 120.00306 * 179.97438 * 12 11 9 41 41 H 1.08996 * 109.77553 * 286.97474 * 21 19 17 42 42 H 1.09003 * 109.77017 * 47.70463 * 21 19 17 43 43 H 1.08998 * 109.60120 * 51.56437 * 22 21 19 44 44 H 1.09000 * 109.60343 * 172.05786 * 22 21 19 45 45 H 1.09007 * 109.47134 * 285.18247 * 24 23 22 46 46 H 1.09007 * 109.46901 * 45.17440 * 24 23 22 47 47 H 1.08991 * 109.47432 * 165.18036 * 24 23 22 48 48 H 1.08008 * 119.79006 * 359.29029 * 26 25 23 49 49 H 1.08006 * 120.02209 * 179.97438 * 27 26 25 50 50 H 1.07999 * 120.05491 * 180.11688 * 28 27 26 51 51 H 1.07994 * 119.75926 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3293 1.7815 -1.4355 5 1 1.3703 1.8664 -1.9465 6 6 3.2161 3.0328 -1.5683 7 6 3.8024 2.3616 -2.8236 8 7 3.3660 1.0862 -2.2227 9 6 3.7635 -0.2184 -2.3461 10 1 3.0319 -1.0119 -2.3065 11 6 5.1068 -0.5210 -2.5219 12 7 5.4579 -1.5499 -3.2639 13 14 6.4161 0.5319 -1.7056 14 1 6.7857 -0.0643 -0.3968 15 1 7.6162 0.5941 -2.5779 16 1 5.8871 1.9031 -1.4932 17 6 2.1389 -1.1672 0.0005 18 8 3.3477 -1.1695 0.0980 19 6 1.3902 -2.4696 -0.1200 20 1 0.3756 -2.3403 0.2568 21 6 1.3375 -2.8926 -1.5898 22 6 0.8626 -4.3500 -1.6463 23 7 1.9055 -5.2052 -1.0766 24 6 1.4916 -6.6146 -1.0813 25 6 2.3062 -4.8065 0.1978 26 6 2.9568 -5.7485 0.9967 27 6 3.3900 -5.4113 2.2608 28 6 3.1802 -4.1327 2.7444 29 6 2.5344 -3.1978 1.9602 30 6 2.0945 -3.5300 0.6883 31 1 -0.3634 -0.1043 1.0223 32 1 -0.3633 0.9376 -0.4209 33 1 -0.3633 -0.8332 -0.6015 34 1 1.6561 2.0008 0.5991 35 1 3.1901 1.1151 0.4235 36 1 2.6584 3.9456 -1.7787 37 1 3.9333 3.1508 -0.7561 38 1 3.2768 2.6161 -3.7439 39 1 4.8843 2.4610 -2.9102 40 1 6.3966 -1.7611 -3.3871 41 1 0.6384 -2.2559 -2.1320 42 1 2.3301 -2.8109 -2.0328 43 1 -0.0547 -4.4584 -1.0676 44 1 0.6801 -4.6353 -2.6824 45 1 0.7561 -6.7800 -0.2940 46 1 1.0510 -6.8607 -2.0475 47 1 2.3603 -7.2490 -0.9060 48 1 3.1214 -6.7480 0.6219 49 1 3.8923 -6.1453 2.8735 50 1 3.5207 -3.8661 3.7340 51 1 2.3713 -2.2002 2.3402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085646442.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:56 Heat of formation + Delta-G solvation = 57.767242 kcal Electronic energy + Delta-G solvation = -32609.597761 eV Core-core repulsion = 28703.712008 eV Total energy + Delta-G solvation = -3905.885753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.94780 -40.50938 -39.30369 -37.75546 -36.19637 -35.24924 -34.23968 -31.30127 -30.88421 -30.45627 -29.86173 -28.22347 -27.10090 -25.54252 -25.00798 -24.23641 -24.10127 -22.67837 -20.84997 -20.57863 -19.83364 -18.96747 -18.07283 -17.99221 -17.22595 -17.05592 -16.70193 -16.51744 -16.33857 -15.50667 -15.47013 -15.33387 -15.15424 -14.88576 -14.71479 -14.39549 -14.25554 -14.16229 -13.99137 -13.72579 -13.30590 -13.13263 -13.08085 -13.03696 -12.91614 -12.81588 -12.74102 -12.62308 -12.52531 -12.23765 -12.03436 -11.93019 -11.83660 -11.58390 -11.48203 -11.30569 -10.73946 -10.43745 -10.34745 -9.63131 -9.33221 -8.57140 -8.54413 -8.12416 -5.26312 0.46692 0.53311 1.28514 1.41418 1.44627 1.97266 2.29652 2.54798 2.72268 2.92558 3.06008 3.38355 3.54886 3.76273 3.88073 3.90500 3.99837 4.06723 4.20400 4.24901 4.30416 4.35206 4.41995 4.43113 4.46833 4.48939 4.54702 4.58626 4.62604 4.68000 4.72499 4.77416 4.81529 4.88728 4.90425 4.93161 4.96434 4.99181 5.05210 5.12579 5.16219 5.22972 5.32857 5.52998 5.60207 5.66398 5.82620 5.88491 5.89575 6.16080 6.32813 6.37627 6.70936 6.81857 7.64772 7.67619 8.56038 9.10882 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.004754 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.434252 B = 5887.970004 C = 6404.807721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.620 5.620 3 C 0.122 3.878 4 C 0.120 3.880 5 H 0.074 0.926 6 C -0.126 4.126 7 C 0.095 3.905 8 N -0.635 5.635 9 C -0.170 4.170 10 H 0.058 0.942 11 C -0.007 4.007 12 N -0.938 5.938 13 Si 0.892 3.108 14 H -0.323 1.323 15 H -0.313 1.313 16 H -0.233 1.233 17 C 0.513 3.487 18 O -0.539 6.539 19 C -0.052 4.052 20 H 0.122 0.878 21 C -0.104 4.104 22 C 0.070 3.930 23 N -0.521 5.521 24 C 0.028 3.972 25 C 0.124 3.876 26 C -0.178 4.178 27 C -0.095 4.095 28 C -0.166 4.166 29 C -0.087 4.087 30 C -0.128 4.128 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.043 0.957 36 H 0.103 0.897 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.026 0.974 40 H 0.250 0.750 41 H 0.090 0.910 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.052 0.948 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.143 0.857 49 H 0.149 0.851 50 H 0.136 0.864 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.934 -2.453 9.760 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.355 5.355 3 C -0.002 4.002 4 C 0.015 3.985 5 H 0.091 0.909 6 C -0.164 4.164 7 C -0.029 4.029 8 N -0.363 5.363 9 C -0.298 4.298 10 H 0.075 0.925 11 C -0.202 4.202 12 N -0.583 5.583 13 Si 0.723 3.277 14 H -0.254 1.254 15 H -0.241 1.241 16 H -0.156 1.156 17 C 0.300 3.700 18 O -0.413 6.413 19 C -0.073 4.073 20 H 0.140 0.860 21 C -0.142 4.142 22 C -0.056 4.056 23 N -0.234 5.234 24 C -0.117 4.117 25 C 0.024 3.976 26 C -0.198 4.198 27 C -0.114 4.114 28 C -0.185 4.185 29 C -0.106 4.106 30 C -0.132 4.132 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.062 0.938 36 H 0.121 0.879 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.045 0.955 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.055 0.945 43 H 0.090 0.910 44 H 0.118 0.882 45 H 0.071 0.929 46 H 0.109 0.891 47 H 0.096 0.904 48 H 0.161 0.839 49 H 0.167 0.833 50 H 0.154 0.846 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.791 -2.733 9.325 19.400 hybrid contribution 1.309 0.204 0.420 1.389 sum -15.482 -2.529 9.745 18.468 Atomic orbital electron populations 1.22001 0.77617 1.04382 1.02676 1.47768 1.07907 1.05128 1.74663 1.21636 0.96679 0.85021 0.96886 1.23067 0.93630 0.90074 0.91764 0.90850 1.23426 0.98695 0.97209 0.97108 1.23007 0.97655 0.85865 0.96363 1.46339 1.40053 1.02440 1.47480 1.18125 0.90100 0.81767 1.39856 0.92496 1.25678 0.98693 0.96378 0.99491 1.70108 1.16088 1.33621 1.38526 0.86491 0.80312 0.82172 0.78718 1.25354 1.24136 1.15640 1.20513 0.87564 0.85663 0.76259 1.90810 1.16031 1.87095 1.47396 1.20216 0.99860 0.90675 0.96533 0.86041 1.21538 1.01800 0.96993 0.93904 1.22169 0.91601 0.90608 1.01217 1.57952 1.40103 1.06201 1.19164 1.22583 1.00909 0.84975 1.03234 1.18803 0.97459 0.93597 0.87719 1.21336 1.03282 1.00003 0.95202 1.21221 0.98002 0.96673 0.95480 1.21178 1.02134 0.94121 1.01091 1.20935 0.97372 0.98633 0.93628 1.19260 1.04840 0.93754 0.95299 0.90964 0.88970 0.91064 0.87240 0.93825 0.87874 0.91323 0.92736 0.95531 0.94104 0.89143 0.94505 0.90976 0.88208 0.92947 0.89052 0.90361 0.83943 0.83300 0.84626 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.48 9.82 127.77 1.25 2.74 16 2 N -0.62 -20.02 2.87 -846.75 -2.43 -22.45 16 3 C 0.12 4.05 5.36 86.38 0.46 4.51 16 4 C 0.12 4.25 4.54 45.09 0.20 4.45 16 5 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 6 C -0.13 -4.02 7.86 31.25 0.25 -3.77 16 7 C 0.10 3.96 7.80 86.48 0.67 4.63 16 8 N -0.64 -30.59 2.92 -694.23 -2.03 -32.62 16 9 C -0.17 -10.01 7.73 84.03 0.65 -9.36 16 10 H 0.06 3.60 4.73 -2.91 -0.01 3.58 16 11 C -0.01 -0.44 5.44 84.86 0.46 0.02 16 12 N -0.94 -64.11 13.97 21.65 0.30 -63.81 16 13 Si 0.89 51.73 27.30 68.60 1.87 53.60 16 14 H -0.32 -20.16 7.11 99.48 0.71 -19.46 16 15 H -0.31 -18.22 7.11 99.48 0.71 -17.51 16 16 H -0.23 -12.13 5.45 99.48 0.54 -11.59 16 17 C 0.51 20.74 3.86 87.66 0.34 21.08 16 18 O -0.54 -28.81 12.92 -3.03 -0.04 -28.85 16 19 C -0.05 -1.74 1.91 -12.24 -0.02 -1.77 16 20 H 0.12 3.09 6.29 -2.39 -0.02 3.07 16 21 C -0.10 -3.67 5.03 30.74 0.15 -3.51 16 22 C 0.07 1.91 5.43 86.53 0.47 2.38 16 23 N -0.52 -16.33 4.77 -720.68 -3.44 -19.78 16 24 C 0.03 0.59 8.74 127.69 1.12 1.71 16 25 C 0.12 4.25 5.79 38.30 0.22 4.48 16 26 C -0.18 -5.34 9.03 22.50 0.20 -5.14 16 27 C -0.10 -2.67 10.03 22.18 0.22 -2.45 16 28 C -0.17 -5.09 10.05 22.24 0.22 -4.86 16 29 C -0.09 -3.06 8.55 22.32 0.19 -2.86 16 30 C -0.13 -4.63 5.07 -19.71 -0.10 -4.73 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.42 8.03 -2.38 -0.02 1.40 16 33 H 0.07 1.31 6.24 -2.39 -0.01 1.30 16 34 H 0.11 2.58 8.11 -2.39 -0.02 2.56 16 35 H 0.04 1.86 7.20 -2.39 -0.02 1.85 16 36 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.07 2.31 8.10 -2.39 -0.02 2.29 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.03 1.21 5.47 -2.39 -0.01 1.20 16 40 H 0.25 16.67 8.31 -92.71 -0.77 15.90 16 41 H 0.09 2.78 7.85 -2.39 -0.02 2.76 16 42 H 0.04 1.82 6.66 -2.39 -0.02 1.81 16 43 H 0.07 1.54 8.11 -2.39 -0.02 1.52 16 44 H 0.10 2.42 8.11 -2.39 -0.02 2.40 16 45 H 0.05 0.96 8.08 -2.38 -0.02 0.94 16 46 H 0.09 1.59 7.99 -2.38 -0.02 1.57 16 47 H 0.08 1.60 6.56 -2.39 -0.02 1.58 16 48 H 0.14 3.54 6.07 -2.91 -0.02 3.52 16 49 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 50 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 51 H 0.11 3.74 7.38 -2.91 -0.02 3.72 16 Total: -1.00 -89.63 384.42 1.97 -87.67 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.76 Total: 18.70 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: 6.97 Total: 7.54 kcal Atomic # 7 Polarization: -131.06 SS G_CDS: -7.60 Total: -138.66 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.04 Total: -28.85 kcal Atomic # 14 Polarization: 51.73 SS G_CDS: 1.87 Total: 53.60 kcal Total: -89.63 1.97 -87.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085646442.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.434 kcal (2) G-P(sol) polarization free energy of solvation -89.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds