Wall clock time and date at job start Wed Apr 1 2020 01:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46432 * 110.99987 * 2 1 4 4 C 1.53386 * 108.65160 * 287.83897 * 3 2 1 5 5 C 1.53048 * 107.92814 * 291.75026 * 4 3 2 6 6 H 1.08991 * 109.40969 * 287.26139 * 5 4 3 7 7 C 1.50704 * 109.43964 * 167.35098 * 5 4 3 8 8 O 1.21283 * 119.99749 * 324.09293 * 7 5 4 9 9 N 1.34772 * 119.99623 * 144.08713 * 7 5 4 10 10 C 1.46503 * 119.99472 * 185.11898 * 9 7 5 11 11 C 1.53010 * 109.46754 * 179.97438 * 10 9 7 12 12 C 1.53779 * 113.61603 * 272.49683 * 11 10 9 13 13 C 1.53778 * 87.08015 * 220.01836 * 12 11 10 14 14 N 1.46505 * 113.61208 * 139.98000 * 13 12 11 15 15 C 1.36932 * 119.99611 * 107.50697 * 14 13 12 16 16 H 1.08000 * 120.00317 * 359.97438 * 15 14 13 17 17 C 1.38816 * 119.99946 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99763 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99935 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46713 * 90.00553 * 19 17 15 21 21 H 1.48504 * 109.47125 * 209.99830 * 19 17 15 22 22 H 1.48495 * 109.47515 * 330.00048 * 19 17 15 23 23 C 1.53776 * 113.61112 * 174.99874 * 11 10 9 24 24 C 1.50802 * 109.65670 * 47.29826 * 5 4 3 25 25 C 1.38618 * 118.12305 * 164.60531 * 24 5 4 26 26 C 1.38049 * 120.48801 * 179.97438 * 25 24 5 27 27 C 1.38318 * 119.88766 * 359.34382 * 26 25 24 28 28 C 1.37805 * 119.95231 * 0.67012 * 27 26 25 29 29 C 1.38377 * 122.01553 * 344.37111 * 24 5 4 30 30 H 1.09003 * 109.47473 * 60.00057 * 1 2 3 31 31 H 1.08998 * 109.47346 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47323 * 300.00118 * 1 2 3 33 33 H 1.08994 * 109.60835 * 168.08790 * 3 2 1 34 34 H 1.09000 * 109.74266 * 47.66696 * 3 2 1 35 35 H 1.08999 * 109.76742 * 172.14938 * 4 3 2 36 36 H 1.09000 * 109.81796 * 51.38890 * 4 3 2 37 37 H 0.96999 * 120.00498 * 5.11834 * 9 7 5 38 38 H 1.08998 * 109.47612 * 299.99832 * 10 9 7 39 39 H 1.09001 * 109.47475 * 60.00541 * 10 9 7 40 40 H 1.09004 * 112.84634 * 43.80658 * 11 10 9 41 41 H 1.08995 * 113.61177 * 334.57177 * 12 11 10 42 42 H 1.09004 * 113.61215 * 105.47226 * 12 11 10 43 43 H 1.09000 * 113.61744 * 270.88383 * 13 12 11 44 44 H 0.96998 * 119.99939 * 287.50130 * 14 13 12 45 45 H 0.96997 * 119.99532 * 180.02562 * 18 17 15 46 46 H 1.09000 * 113.61427 * 254.53174 * 23 11 10 47 47 H 1.09001 * 113.61707 * 25.43658 * 23 11 10 48 48 H 1.07998 * 119.75529 * 359.68469 * 25 24 5 49 49 H 1.08005 * 120.06132 * 179.60558 * 26 25 24 50 50 H 1.08001 * 120.02824 * 180.39715 * 27 26 25 51 51 H 1.07995 * 119.79674 * 179.74433 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9937 1.3671 0.0000 4 6 1.7539 1.9846 -1.3834 5 6 2.6496 1.2545 -2.3869 6 1 3.6858 1.5560 -2.2338 7 6 2.2257 1.6098 -3.7888 8 8 1.0517 1.7778 -4.0431 9 7 3.1511 1.7409 -4.7598 10 6 2.7529 2.1952 -6.0945 11 6 3.9845 2.2578 -7.0003 12 6 4.7339 3.5988 -6.9293 13 6 4.9199 3.4856 -8.4516 14 7 4.7557 4.7580 -9.1590 15 6 5.8486 5.3975 -9.6802 16 1 6.8316 4.9642 -9.5695 17 6 5.6930 6.6028 -10.3510 18 7 4.4950 7.1312 -10.4856 19 14 7.1840 7.4756 -11.0614 20 1 7.4101 7.0145 -12.4547 21 1 6.9478 8.9417 -11.0575 22 1 8.3792 7.1645 -10.2369 23 6 3.6572 2.6079 -8.4615 24 6 2.5257 -0.2351 -2.1875 25 6 2.9941 -1.0698 -3.1902 26 6 2.9055 -2.4411 -3.0583 27 6 2.3581 -2.9894 -1.9125 28 6 1.8900 -2.1660 -0.9115 29 6 1.9685 -0.7782 -1.0432 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.0627 1.3485 0.2119 34 1 1.4807 1.9584 0.7584 35 1 2.0097 3.0439 -1.3636 36 1 0.7082 1.8631 -1.6661 37 1 4.0806 1.5346 -4.5750 38 1 2.0277 1.4981 -6.5143 39 1 2.3047 3.1862 -6.0223 40 1 4.6324 1.3878 -6.8943 41 1 4.1040 4.4355 -6.6273 42 1 5.6683 3.5477 -6.3703 43 1 5.8248 2.9521 -8.7425 44 1 3.8728 5.1473 -9.2582 45 1 4.3863 7.9732 -10.9546 46 1 3.7223 1.7569 -9.1394 47 1 2.7329 3.1738 -8.5784 48 1 3.4273 -0.6441 -4.0832 49 1 3.2669 -3.0849 -3.8466 50 1 2.2936 -4.0621 -1.8041 51 1 1.4593 -2.5967 -0.0198 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091075813.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:36 Heat of formation + Delta-G solvation = 4.477896 kcal Electronic energy + Delta-G solvation = -29549.930621 eV Core-core repulsion = 25641.734068 eV Total energy + Delta-G solvation = -3908.196552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.10107 -40.56678 -39.70169 -37.94739 -36.08963 -35.15953 -34.80675 -32.19549 -31.37759 -30.88251 -29.27913 -27.88984 -26.46745 -25.98012 -25.32320 -24.17820 -23.34291 -22.39753 -21.72364 -20.58891 -20.30780 -19.07488 -18.48088 -17.77211 -17.47438 -16.99700 -16.83407 -16.58725 -16.28611 -15.87225 -15.59064 -15.41336 -15.22661 -15.13307 -14.88230 -14.68482 -14.42861 -14.19504 -13.85354 -13.42163 -13.36589 -13.24959 -13.13757 -13.07089 -12.98437 -12.93519 -12.83865 -12.67079 -12.34087 -12.19758 -12.08728 -11.91534 -11.67701 -11.62317 -11.56737 -11.16029 -10.96107 -10.81133 -10.30740 -10.13462 -9.70283 -8.98321 -8.91221 -7.95058 -5.23419 0.33032 0.41543 1.46934 1.48614 1.50830 1.56966 2.10655 2.56311 2.69675 2.91906 3.36656 3.47849 3.60639 3.65266 3.73331 3.77448 3.87717 3.95911 4.12074 4.21209 4.23777 4.24390 4.31925 4.35487 4.40940 4.46006 4.48456 4.53597 4.57009 4.58322 4.68554 4.74679 4.78413 4.84478 4.96228 4.96914 4.97567 5.03152 5.06276 5.16355 5.21434 5.33268 5.35508 5.41240 5.45578 5.52207 5.60488 5.72023 5.81333 5.99316 6.27232 6.37525 6.48129 7.15952 7.32620 8.11026 8.32634 9.28459 Molecular weight = 343.20amu Principal moments of inertia in cm(-1) A = 0.022044 B = 0.001902 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.898156 B =14714.857318 C =15299.459830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.505 5.505 3 C 0.059 3.941 4 C -0.144 4.144 5 C -0.059 4.059 6 H 0.124 0.876 7 C 0.522 3.478 8 O -0.582 6.582 9 N -0.711 5.711 10 C 0.138 3.862 11 C -0.094 4.094 12 C -0.152 4.152 13 C 0.143 3.857 14 N -0.730 5.730 15 C -0.241 4.241 16 H 0.080 0.920 17 C -0.082 4.082 18 N -0.972 5.972 19 Si 0.974 3.026 20 H -0.287 1.287 21 H -0.298 1.298 22 H -0.267 1.267 23 C -0.138 4.138 24 C -0.125 4.125 25 C -0.116 4.116 26 C -0.138 4.138 27 C -0.105 4.105 28 C -0.130 4.130 29 C 0.105 3.895 30 H 0.021 0.979 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.061 0.939 37 H 0.415 0.585 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.123 0.877 41 H 0.055 0.945 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.125 0.875 49 H 0.141 0.859 50 H 0.149 0.851 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 -21.794 24.532 33.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.221 5.221 3 C -0.068 4.068 4 C -0.184 4.184 5 C -0.080 4.080 6 H 0.142 0.858 7 C 0.309 3.691 8 O -0.462 6.462 9 N -0.363 5.363 10 C 0.015 3.985 11 C -0.113 4.113 12 C -0.193 4.193 13 C 0.034 3.966 14 N -0.368 5.368 15 C -0.373 4.373 16 H 0.098 0.902 17 C -0.273 4.273 18 N -0.623 5.623 19 Si 0.803 3.197 20 H -0.214 1.214 21 H -0.225 1.225 22 H -0.192 1.192 23 C -0.177 4.177 24 C -0.128 4.128 25 C -0.135 4.135 26 C -0.157 4.157 27 C -0.124 4.124 28 C -0.149 4.149 29 C 0.008 3.992 30 H 0.040 0.960 31 H 0.095 0.905 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.080 0.920 37 H 0.253 0.747 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.141 0.859 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.143 0.857 49 H 0.159 0.841 50 H 0.166 0.834 51 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -4.105 -21.778 24.748 33.221 hybrid contribution 0.272 1.502 -1.529 2.161 sum -3.833 -20.276 23.219 31.064 Atomic orbital electron populations 1.22541 0.84522 1.03161 1.01616 1.58854 1.08878 1.13552 1.40835 1.22317 1.02259 0.86722 0.95474 1.22126 0.99637 1.00784 0.95817 1.20261 1.03145 0.93208 0.91359 0.85848 1.20784 0.85404 0.75477 0.87408 1.90679 1.19673 1.52198 1.83665 1.46027 1.11869 1.67504 1.10903 1.21227 0.96886 0.98785 0.81643 1.22468 0.96060 0.98698 0.94099 1.23717 0.99945 0.96099 0.99527 1.21960 0.97050 0.86348 0.91262 1.42641 1.06532 1.22328 1.65261 1.19735 0.89145 1.01816 1.26595 0.90232 1.25618 0.99292 0.99488 1.02941 1.69830 1.22673 1.20774 1.49057 0.85130 0.79180 0.77087 0.78322 1.21449 1.22516 1.19182 1.23335 0.98624 0.99745 0.96011 1.19584 1.04802 0.93607 0.94796 1.21240 0.99582 0.94441 0.98190 1.21346 1.00633 0.94673 0.99012 1.21347 0.96998 1.01005 0.93029 1.21259 1.02013 0.91326 1.00319 1.18670 0.98233 0.93364 0.88895 0.96024 0.90511 0.88822 0.89033 0.87627 0.89354 0.92009 0.74733 0.91976 0.93547 0.85944 0.92655 0.91236 0.90035 0.79698 0.94142 0.90323 0.91644 0.85678 0.84104 0.83356 0.84366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.28 127.69 1.19 1.57 16 2 N -0.50 -8.02 4.74 -720.63 -3.42 -11.43 16 3 C 0.06 0.80 5.81 86.52 0.50 1.30 16 4 C -0.14 -2.54 5.20 30.74 0.16 -2.38 16 5 C -0.06 -1.07 2.65 -12.24 -0.03 -1.11 16 6 H 0.12 1.64 8.13 -2.39 -0.02 1.62 16 7 C 0.52 12.71 5.83 87.66 0.51 13.22 16 8 O -0.58 -19.67 16.06 -3.04 -0.05 -19.72 16 9 N -0.71 -14.46 4.85 -463.04 -2.25 -16.71 16 10 C 0.14 3.42 5.52 86.38 0.48 3.90 16 11 C -0.09 -2.22 3.75 -10.27 -0.04 -2.26 16 12 C -0.15 -4.70 7.43 31.12 0.23 -4.46 16 13 C 0.14 5.31 4.48 45.52 0.20 5.52 16 14 N -0.73 -36.59 5.40 -320.44 -1.73 -38.32 16 15 C -0.24 -13.27 9.97 84.04 0.84 -12.43 16 16 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 17 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 18 N -0.97 -60.18 13.06 21.65 0.28 -59.90 16 19 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 20 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 21 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 22 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 23 C -0.14 -4.15 7.39 31.12 0.23 -3.92 16 24 C -0.12 -2.39 5.40 -19.71 -0.11 -2.50 16 25 C -0.12 -2.07 9.07 22.32 0.20 -1.87 16 26 C -0.14 -2.10 10.05 22.24 0.22 -1.88 16 27 C -0.11 -1.46 10.04 22.19 0.22 -1.24 16 28 C -0.13 -2.03 9.25 22.50 0.21 -1.83 16 29 C 0.10 1.91 5.12 38.30 0.20 2.11 16 30 H 0.02 0.39 6.50 -2.39 -0.02 0.37 16 31 H 0.08 0.99 7.64 -2.39 -0.02 0.97 16 32 H 0.09 0.95 8.11 -2.39 -0.02 0.93 16 33 H 0.09 1.10 8.11 -2.39 -0.02 1.08 16 34 H 0.11 1.05 8.03 -2.39 -0.02 1.03 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.06 1.42 5.73 -2.39 -0.01 1.40 16 37 H 0.42 5.89 8.35 -92.71 -0.77 5.12 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.05 1.39 7.84 -2.39 -0.02 1.37 16 40 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 1.98 7.89 -2.39 -0.02 1.96 16 42 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 43 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 44 H 0.37 20.31 7.92 -92.71 -0.73 19.58 16 45 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 46 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 48 H 0.13 2.02 6.73 -2.91 -0.02 2.00 16 49 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 50 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 51 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -73.34 404.94 -0.02 -73.36 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -0.57 Total: 37.11 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: 5.68 Total: -12.48 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -7.11 Total: -126.37 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.05 Total: -19.72 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -73.34 -0.02 -73.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091075813.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.841 kcal (2) G-P(sol) polarization free energy of solvation -73.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds