Wall clock time and date at job start Wed Apr 1 2020 02:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99995 * 2 1 4 4 C 1.52996 * 109.46884 * 90.00303 * 3 2 1 5 5 C 1.53004 * 109.46700 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.46916 * 179.97438 * 5 4 3 7 7 C 1.46905 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47066 * 180.02562 * 7 6 5 9 9 O 1.21297 * 120.00124 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00196 * 180.02562 * 8 7 6 11 11 C 1.37100 * 120.00290 * 180.02562 * 10 8 7 12 12 H 1.07990 * 119.99768 * 359.97438 * 11 10 8 13 13 C 1.38956 * 119.99812 * 180.02562 * 11 10 8 14 14 N 1.31406 * 120.00264 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99477 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47050 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46549 * 120.00378 * 15 13 11 18 18 H 1.48501 * 109.46563 * 239.99625 * 15 13 11 19 19 C 1.34780 * 119.99716 * 179.97438 * 2 1 3 20 20 O 1.21285 * 119.99658 * 179.97438 * 19 2 1 21 21 C 1.50694 * 120.00238 * 0.02562 * 19 2 1 22 22 H 1.08999 * 109.47164 * 299.99591 * 21 19 2 23 23 C 1.52999 * 109.47232 * 179.97438 * 21 19 2 24 24 C 1.53000 * 109.47358 * 179.97438 * 23 21 19 25 25 C 1.53000 * 109.46958 * 59.99774 * 24 23 21 26 26 C 1.52997 * 109.47225 * 299.99725 * 25 24 23 27 27 H 1.08997 * 109.47846 * 300.00405 * 26 25 24 28 28 F 1.39901 * 109.47000 * 179.97438 * 26 25 24 29 29 C 1.52998 * 109.46754 * 60.00785 * 26 25 24 30 30 H 1.08996 * 109.47449 * 89.99787 * 1 2 3 31 31 H 1.09000 * 109.47129 * 210.00406 * 1 2 3 32 32 H 1.08997 * 109.46927 * 329.99946 * 1 2 3 33 33 H 1.08993 * 109.46962 * 329.99790 * 3 2 1 34 34 H 1.09005 * 109.46850 * 210.00543 * 3 2 1 35 35 H 1.08995 * 109.47485 * 60.00430 * 4 3 2 36 36 H 1.08996 * 109.47010 * 299.99222 * 4 3 2 37 37 H 1.09004 * 109.46889 * 60.00145 * 5 4 3 38 38 H 1.08995 * 109.47384 * 299.99786 * 5 4 3 39 39 H 1.00901 * 111.00067 * 303.95263 * 6 5 4 40 40 H 1.09001 * 109.46798 * 300.00327 * 7 6 5 41 41 H 1.08998 * 109.46961 * 60.00043 * 7 6 5 42 42 H 0.97009 * 119.99629 * 359.97438 * 10 8 7 43 43 H 0.96997 * 120.00444 * 179.97438 * 14 13 11 44 44 H 1.09002 * 109.46760 * 299.99469 * 23 21 19 45 45 H 1.08994 * 109.47453 * 59.99919 * 23 21 19 46 46 H 1.09000 * 109.47461 * 180.02562 * 24 23 21 47 47 H 1.08999 * 109.47127 * 299.99861 * 24 23 21 48 48 H 1.09000 * 109.47516 * 60.00760 * 25 24 23 49 49 H 1.09004 * 109.47087 * 180.02562 * 25 24 23 50 50 H 1.09000 * 109.47287 * 179.97438 * 29 26 25 51 51 H 1.08999 * 109.47645 * 59.99609 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 1.4425 5 6 3.2181 3.0350 1.4424 6 7 3.4625 3.4594 2.8274 7 6 4.1967 4.7312 2.8666 8 6 4.4289 5.1332 4.3003 9 8 4.0231 4.4293 5.2009 10 7 5.0875 6.2749 4.5818 11 6 5.2992 6.6404 5.8862 12 1 4.9379 6.0136 6.6879 13 6 5.9777 7.8177 6.1763 14 7 6.4169 8.5806 5.2007 15 14 6.2655 8.3160 7.9536 16 1 5.6774 7.2936 8.8557 17 1 7.7248 8.4199 8.2083 18 1 5.6236 9.6306 8.2091 19 6 2.1389 -1.1673 0.0005 20 8 3.3517 -1.1673 0.0001 21 6 1.3854 -2.4723 0.0005 22 1 0.7584 -2.5299 0.8903 23 6 2.3796 -3.6352 0.0005 24 6 1.6146 -4.9603 0.0012 25 6 0.7345 -5.0416 -1.2477 26 6 -0.2597 -3.8788 -1.2477 27 1 -0.8861 -3.9362 -0.3575 28 9 -1.0641 -3.9529 -2.3899 29 6 0.5053 -2.5538 -1.2484 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6085 2.0283 -0.5138 34 1 3.1499 1.1384 -0.5139 35 1 3.0417 0.9507 1.9563 36 1 1.5002 1.8407 1.9563 37 1 2.6293 3.7949 0.9285 38 1 4.1705 2.9043 0.9287 39 1 2.5978 3.5254 3.3433 40 1 5.1561 4.6124 2.3629 41 1 3.6146 5.5024 2.3623 42 1 5.4123 6.8376 3.8616 43 1 6.8902 9.4027 5.4032 44 1 3.0062 -3.5775 -0.8895 45 1 3.0062 -3.5776 0.8904 46 1 2.3229 -5.7888 0.0016 47 1 0.9883 -5.0178 0.8914 48 1 1.3608 -4.9843 -2.1380 49 1 0.1892 -5.9854 -1.2471 50 1 -0.2030 -1.7253 -1.2488 51 1 1.1316 -2.4963 -2.1386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754370486.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:43 Heat of formation + Delta-G solvation = -140.309082 kcal Electronic energy + Delta-G solvation = -29451.332943 eV Core-core repulsion = 25106.088731 eV Total energy + Delta-G solvation = -4345.244212 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.10422 -40.77283 -38.31810 -37.91257 -36.56821 -35.50440 -33.87704 -32.56961 -31.26444 -30.93035 -30.59976 -27.74408 -26.86954 -25.26135 -23.97294 -23.24929 -22.74834 -21.56821 -20.72030 -19.50273 -19.18577 -17.86547 -17.51770 -16.82774 -16.54304 -16.29486 -15.94389 -15.68612 -15.62100 -15.29573 -15.02733 -14.60835 -14.37646 -14.32433 -14.12749 -13.95653 -13.58065 -13.50640 -13.38668 -13.26403 -13.03103 -12.67529 -12.37632 -12.22103 -12.06012 -11.87442 -11.82204 -11.67649 -11.58518 -11.46765 -11.35423 -11.19494 -11.11056 -11.05333 -10.77919 -10.73209 -10.33259 -10.21185 -9.92627 -9.50592 -9.01098 -8.43921 -8.02957 -7.94056 -6.40361 -3.81091 2.29627 2.61105 3.17424 3.27785 3.35339 3.77501 3.91249 3.92853 4.00154 4.11996 4.26016 4.34558 4.36993 4.49001 4.54921 4.59953 4.71942 4.77927 4.84337 4.87030 4.98176 5.03532 5.08330 5.14856 5.19201 5.25779 5.26651 5.31390 5.38656 5.43319 5.45262 5.48218 5.58880 5.60752 5.67889 5.74288 5.81104 5.88387 6.00501 6.04467 6.08799 6.27487 6.31948 7.01093 7.25288 7.56807 7.69313 7.86164 8.08327 8.63071 9.19516 9.56117 10.07725 10.77521 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.030827 B = 0.001434 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.070387 B =19523.026061 C =19849.318503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.616 5.616 3 C 0.116 3.884 4 C -0.131 4.131 5 C 0.063 3.937 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.104 0.896 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 C 0.518 3.482 20 O -0.529 6.529 21 C -0.102 4.102 22 H 0.101 0.899 23 C -0.104 4.104 24 C -0.117 4.117 25 C -0.148 4.148 26 C 0.094 3.906 27 H 0.085 0.915 28 F -0.214 7.214 29 C -0.150 4.150 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.348 0.652 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.090 0.910 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.387 -22.999 -17.532 32.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.349 5.349 3 C -0.007 4.007 4 C -0.170 4.170 5 C -0.067 4.067 6 N -0.301 5.301 7 C -0.082 4.082 8 C 0.226 3.774 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 C 0.305 3.695 20 O -0.404 6.404 21 C -0.123 4.123 22 H 0.119 0.881 23 C -0.142 4.142 24 C -0.154 4.154 25 C -0.186 4.186 26 C 0.058 3.942 27 H 0.103 0.897 28 F -0.194 7.194 29 C -0.188 4.188 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.167 0.833 40 H 0.104 0.896 41 H 0.061 0.939 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.094 0.906 49 H 0.094 0.906 50 H 0.108 0.892 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.359 -23.667 -16.871 32.418 hybrid contribution -0.453 1.481 0.073 1.550 sum -14.811 -22.186 -16.798 31.524 Atomic orbital electron populations 1.21997 0.79659 1.03570 1.01777 1.47855 1.06934 1.06239 1.73879 1.21477 0.97813 0.83963 0.97419 1.21881 1.00675 0.98074 0.96340 1.21856 0.99569 0.94917 0.90360 1.60038 1.27325 1.30978 1.11808 1.21671 0.99409 0.90314 0.96782 1.19828 0.84356 0.83394 0.89775 1.90521 1.55054 1.53586 1.47589 1.41873 1.49632 1.19826 1.08787 1.19765 1.33567 1.05511 0.84019 0.87868 1.25264 0.96904 0.96052 0.99757 1.69617 1.38641 1.14220 1.31867 0.85795 0.77996 0.78439 0.82082 1.19226 1.20740 1.20788 1.20542 0.87978 0.85070 0.75869 1.90737 1.13789 1.87169 1.48726 1.21250 0.97976 0.93429 0.99695 0.88126 1.21421 0.96874 0.91707 1.04193 1.21501 0.98711 0.97967 0.97266 1.22172 0.98112 0.98082 1.00189 1.21544 0.90946 0.96053 0.85634 0.89687 1.92826 1.75396 1.97396 1.53815 1.22398 0.99611 0.98133 0.98612 0.92096 0.90795 0.90640 0.90525 0.89576 0.90435 0.91974 0.95608 0.90918 0.83314 0.89576 0.93917 0.77455 0.91941 0.90803 0.90436 0.90609 0.91386 0.90573 0.90616 0.89159 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.34 8.80 59.85 0.53 0.87 16 2 N -0.62 -5.05 2.87 -181.58 -0.52 -5.58 16 3 C 0.12 1.06 5.41 -4.04 -0.02 1.03 16 4 C -0.13 -1.45 5.80 -26.73 -0.16 -1.60 16 5 C 0.06 0.79 5.69 -3.82 -0.02 0.77 16 6 N -0.67 -11.27 6.13 -115.05 -0.70 -11.98 16 7 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 8 C 0.44 10.69 7.82 -10.99 -0.09 10.61 16 9 O -0.58 -16.25 15.78 5.54 0.09 -16.17 16 10 N -0.56 -14.59 5.29 -10.96 -0.06 -14.65 16 11 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 12 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 13 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 14 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 15 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 19 C 0.52 5.12 7.08 -10.99 -0.08 5.04 16 20 O -0.53 -7.45 15.56 5.55 0.09 -7.36 16 21 C -0.10 -0.66 1.72 -91.77 -0.16 -0.81 16 22 H 0.10 0.49 7.40 -51.93 -0.38 0.11 16 23 C -0.10 -0.71 4.49 -26.73 -0.12 -0.83 16 24 C -0.12 -0.54 5.92 -26.73 -0.16 -0.70 16 25 C -0.15 -0.70 5.66 -26.73 -0.15 -0.85 16 26 C 0.09 0.48 3.88 -26.73 -0.10 0.38 16 27 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 28 F -0.21 -1.65 17.08 2.25 0.04 -1.61 16 29 C -0.15 -0.80 4.57 -26.73 -0.12 -0.92 16 30 H 0.06 0.22 6.95 -51.93 -0.36 -0.14 16 31 H 0.07 0.25 6.01 -51.93 -0.31 -0.06 16 32 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 33 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 34 H 0.09 0.92 7.42 -51.93 -0.39 0.53 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.35 5.93 8.43 -39.29 -0.33 5.60 16 40 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.39 9.66 7.90 -40.82 -0.32 9.34 16 43 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 44 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 45 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 46 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 48 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 50 H 0.09 0.39 4.53 -51.93 -0.24 0.16 16 51 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 408.97 15.07 6.16 6.16 Total: -1.00 -34.68 408.97 -8.72 -43.40 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -8.60 Total: 9.85 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -0.92 Total: 5.76 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.56 Total: -56.27 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.17 Total: -23.53 kcal Atomic # 9 Polarization: -1.65 SS G_CDS: 0.04 Total: -1.61 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.68 -8.72 -43.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754370486.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.905 kcal (2) G-P(sol) polarization free energy of solvation -34.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds