Wall clock time and date at job start Wed Apr 1 2020 02:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 120.00628 * 2 1 4 4 C 1.52999 * 109.47346 * 270.00398 * 3 2 1 5 5 C 1.52996 * 109.47359 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47204 * 179.97438 * 5 4 3 7 7 C 1.46902 * 110.99825 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47180 * 179.97438 * 7 6 5 9 9 O 1.21296 * 119.99497 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00382 * 179.97438 * 8 7 6 11 11 C 1.37102 * 120.00262 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99850 * 359.97438 * 11 10 8 13 13 C 1.38946 * 120.00093 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00236 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99917 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47157 * 90.00391 * 15 13 11 17 17 H 1.48498 * 109.47013 * 210.00132 * 15 13 11 18 18 H 1.48493 * 109.47183 * 329.99765 * 15 13 11 19 19 C 1.34779 * 119.99457 * 180.02562 * 2 1 3 20 20 O 1.21284 * 119.99695 * 179.97438 * 19 2 1 21 21 C 1.50696 * 120.00395 * 0.02562 * 19 2 1 22 22 H 1.08996 * 109.47390 * 60.00019 * 21 19 2 23 23 C 1.52997 * 109.47242 * 180.02562 * 21 19 2 24 24 C 1.53006 * 109.47127 * 180.02562 * 23 21 19 25 25 C 1.52999 * 109.46626 * 299.99539 * 24 23 21 26 26 C 1.52997 * 109.46991 * 60.00378 * 25 24 23 27 27 H 1.09001 * 109.47289 * 179.97438 * 26 25 24 28 28 F 1.39901 * 109.47234 * 59.99869 * 26 25 24 29 29 C 1.52996 * 109.47131 * 299.99311 * 26 25 24 30 30 H 1.08999 * 109.47018 * 269.99958 * 1 2 3 31 31 H 1.09004 * 109.46971 * 29.99775 * 1 2 3 32 32 H 1.08998 * 109.47445 * 149.99490 * 1 2 3 33 33 H 1.09004 * 109.46598 * 29.99825 * 3 2 1 34 34 H 1.08999 * 109.47282 * 149.99692 * 3 2 1 35 35 H 1.09000 * 109.47153 * 299.99620 * 4 3 2 36 36 H 1.08999 * 109.47506 * 59.99432 * 4 3 2 37 37 H 1.09000 * 109.46839 * 300.00010 * 5 4 3 38 38 H 1.08999 * 109.47114 * 59.99389 * 5 4 3 39 39 H 1.00903 * 111.00465 * 56.04362 * 6 5 4 40 40 H 1.08997 * 109.47188 * 299.99357 * 7 6 5 41 41 H 1.08994 * 109.47541 * 59.99933 * 7 6 5 42 42 H 0.97001 * 120.00102 * 359.97438 * 10 8 7 43 43 H 0.96997 * 120.00570 * 179.97438 * 14 13 11 44 44 H 1.09001 * 109.47502 * 60.00161 * 23 21 19 45 45 H 1.09001 * 109.47289 * 299.99957 * 23 21 19 46 46 H 1.08993 * 109.46955 * 60.00011 * 24 23 21 47 47 H 1.09000 * 109.47050 * 179.97438 * 24 23 21 48 48 H 1.09002 * 109.46719 * 180.02562 * 25 24 23 49 49 H 1.08993 * 109.47839 * 299.99931 * 25 24 23 50 50 H 1.08996 * 109.47452 * 300.00000 * 29 26 25 51 51 H 1.09000 * 109.47054 * 180.02562 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2171 3.0356 -1.4425 6 7 3.4625 3.4594 -2.8274 7 6 4.1969 4.7310 -2.8665 8 6 4.4301 5.1325 -4.3002 9 8 4.0248 4.4283 -5.2008 10 7 5.0889 6.2740 -4.5818 11 6 5.3006 6.6395 -5.8861 12 1 4.9398 6.0125 -6.6880 13 6 5.9794 7.8166 -6.1763 14 7 6.1828 8.1668 -7.4265 15 14 6.6030 8.9016 -4.7893 16 1 7.9812 8.4900 -4.4203 17 1 6.6120 10.3181 -5.2348 18 1 5.7114 8.7591 -3.6104 19 6 2.1387 -1.1673 -0.0005 20 8 3.3516 -1.1673 -0.0010 21 6 1.3852 -2.4723 -0.0017 22 1 0.7589 -2.5295 -0.8919 23 6 2.3794 -3.6353 -0.0014 24 6 1.6143 -4.9603 -0.0033 25 6 0.7334 -5.0422 1.2450 26 6 -0.2607 -3.8792 1.2448 27 1 -0.8886 -3.9378 2.1338 28 9 -1.0639 -3.9525 0.1016 29 6 0.5043 -2.5543 1.2466 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 1.6085 2.0283 0.5138 34 1 3.1499 1.1382 0.5139 35 1 3.0416 0.9507 -1.9564 36 1 1.5002 1.8407 -1.9563 37 1 2.6277 3.7950 -0.9287 38 1 4.1695 2.9056 -0.9285 39 1 2.5983 3.5244 -3.3442 40 1 3.6145 5.5026 -2.3630 41 1 5.1558 4.6125 -2.3623 42 1 5.4127 6.8374 -3.8616 43 1 6.6563 8.9887 -7.6292 44 1 3.0054 -3.5780 0.8891 45 1 3.0068 -3.5772 -0.8909 46 1 0.9887 -5.0173 -0.8939 47 1 2.3226 -5.7888 -0.0036 48 1 0.1887 -5.9863 1.2440 49 1 1.3590 -4.9852 2.1357 50 1 1.1300 -2.4972 2.1373 51 1 -0.2040 -1.7258 1.2469 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754370488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:48 Heat of formation + Delta-G solvation = -131.156642 kcal Electronic energy + Delta-G solvation = -29685.193398 eV Core-core repulsion = 25340.346066 eV Total energy + Delta-G solvation = -4344.847332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.14083 -40.67428 -38.48446 -37.70481 -36.57598 -35.55103 -33.92192 -32.58846 -31.64656 -31.00992 -30.85946 -27.81772 -26.92613 -25.28582 -23.84992 -23.26007 -22.77336 -21.59455 -20.34942 -19.51855 -19.33584 -18.30279 -17.55964 -16.88677 -16.57394 -16.21827 -15.90628 -15.72012 -15.68493 -15.39121 -15.08334 -14.88168 -14.42635 -14.19145 -14.01024 -13.86963 -13.59998 -13.48866 -13.19743 -13.13265 -12.83614 -12.72384 -12.44894 -12.41640 -12.23069 -12.12326 -11.99951 -11.83016 -11.73166 -11.65889 -11.43707 -11.20053 -11.14739 -10.92868 -10.79856 -10.58344 -10.58039 -9.95888 -9.89919 -9.55310 -9.00675 -8.56239 -8.17067 -8.10187 -6.29133 -3.80514 2.32391 2.63003 3.03770 3.08641 3.16283 3.76679 3.81850 3.93197 4.07600 4.11037 4.15181 4.22104 4.41789 4.52737 4.58099 4.63415 4.76548 4.80064 4.82682 4.88918 4.89556 4.95546 5.05127 5.08326 5.19830 5.22698 5.23874 5.32735 5.36794 5.43129 5.44382 5.47347 5.56908 5.62805 5.65306 5.66585 5.80896 5.83674 5.93727 5.95534 6.02891 6.07335 6.29321 7.02214 7.13974 7.59971 7.61949 7.88115 8.16776 8.62141 8.97117 9.44608 9.85305 10.84062 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.029368 B = 0.001510 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.193538 B =18541.609138 C =18671.951920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.616 5.616 3 C 0.117 3.883 4 C -0.132 4.132 5 C 0.064 3.936 6 N -0.669 5.669 7 C 0.049 3.951 8 C 0.450 3.550 9 O -0.564 6.564 10 N -0.591 5.591 11 C -0.305 4.305 12 H 0.119 0.881 13 C 0.041 3.959 14 N -0.882 5.882 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.270 1.270 19 C 0.518 3.482 20 O -0.531 6.531 21 C -0.106 4.106 22 H 0.103 0.897 23 C -0.101 4.101 24 C -0.122 4.122 25 C -0.148 4.148 26 C 0.095 3.905 27 H 0.086 0.914 28 F -0.211 7.211 29 C -0.150 4.150 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.026 0.974 38 H 0.072 0.928 39 H 0.350 0.650 40 H 0.044 0.956 41 H 0.087 0.913 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.117 -22.377 25.409 37.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.349 5.349 3 C -0.006 4.006 4 C -0.171 4.171 5 C -0.066 4.066 6 N -0.302 5.302 7 C -0.084 4.084 8 C 0.236 3.764 9 O -0.446 6.446 10 N -0.231 5.231 11 C -0.434 4.434 12 H 0.137 0.863 13 C -0.162 4.162 14 N -0.522 5.522 15 Si 0.707 3.293 16 H -0.196 1.196 17 H -0.202 1.202 18 H -0.196 1.196 19 C 0.306 3.694 20 O -0.406 6.406 21 C -0.127 4.127 22 H 0.121 0.879 23 C -0.139 4.139 24 C -0.159 4.159 25 C -0.186 4.186 26 C 0.058 3.942 27 H 0.104 0.896 28 F -0.192 7.192 29 C -0.188 4.188 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.091 0.909 39 H 0.169 0.831 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.094 0.906 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.093 0.907 49 H 0.100 0.900 50 H 0.104 0.896 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.104 -23.076 24.534 36.515 hybrid contribution -0.279 1.800 1.147 2.152 sum -14.383 -21.276 25.680 36.318 Atomic orbital electron populations 1.22001 0.79600 1.03755 1.01651 1.47855 1.06953 1.06188 1.73954 1.21459 0.97770 0.84060 0.97343 1.21887 1.00741 0.97986 0.96453 1.21855 0.99585 0.95020 0.90183 1.60011 1.27539 1.30677 1.11945 1.21701 0.99582 0.90641 0.96500 1.19730 0.83843 0.82965 0.89896 1.90566 1.53658 1.52842 1.47544 1.42205 1.51888 1.20850 1.08131 1.19441 1.34338 1.06842 0.82760 0.86295 1.25035 0.97480 0.97163 0.96486 1.69620 1.41080 1.24455 1.17038 0.86662 0.79764 0.81076 0.81817 1.19590 1.20204 1.19555 1.20623 0.87964 0.85145 0.75717 1.90727 1.13844 1.87227 1.48839 1.21285 0.97971 0.93095 1.00324 0.87921 1.21381 0.96719 0.91870 1.03913 1.21535 0.98691 0.97710 0.97966 1.22165 0.98115 0.98105 1.00176 1.21530 0.90925 0.96034 0.85683 0.89630 1.92812 1.75348 1.97406 1.53640 1.22418 0.99556 0.98177 0.98614 0.92247 0.90721 0.90521 0.90595 0.89629 0.90369 0.91909 0.95583 0.90915 0.83103 0.93818 0.89450 0.79690 0.91634 0.91012 0.90647 0.91185 0.90969 0.90664 0.90022 0.89596 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.37 8.80 59.84 0.53 0.90 16 2 N -0.62 -5.15 2.87 -181.58 -0.52 -5.67 16 3 C 0.12 1.04 5.41 -4.04 -0.02 1.02 16 4 C -0.13 -1.44 5.80 -26.73 -0.16 -1.60 16 5 C 0.06 0.77 5.68 -3.83 -0.02 0.74 16 6 N -0.67 -10.88 6.12 -115.06 -0.70 -11.58 16 7 C 0.05 0.83 6.17 -4.97 -0.03 0.80 16 8 C 0.45 10.53 7.82 -10.99 -0.09 10.44 16 9 O -0.56 -15.62 15.78 5.54 0.09 -15.53 16 10 N -0.59 -14.41 5.09 -10.96 -0.06 -14.46 16 11 C -0.31 -8.80 10.16 -14.93 -0.15 -8.95 16 12 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 13 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 14 N -0.88 -26.07 13.96 55.50 0.77 -25.30 16 15 Si 0.88 19.61 27.74 -169.99 -4.71 14.90 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 19 C 0.52 5.27 7.08 -10.99 -0.08 5.19 16 20 O -0.53 -7.55 15.56 5.55 0.09 -7.47 16 21 C -0.11 -0.77 1.60 -91.77 -0.15 -0.92 16 22 H 0.10 0.74 7.06 -51.93 -0.37 0.38 16 23 C -0.10 -0.76 4.49 -26.73 -0.12 -0.88 16 24 C -0.12 -0.69 5.80 -26.73 -0.16 -0.85 16 25 C -0.15 -0.65 5.72 -26.73 -0.15 -0.80 16 26 C 0.09 0.44 4.12 -26.73 -0.11 0.33 16 27 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 28 F -0.21 -1.50 16.04 2.25 0.04 -1.47 16 29 C -0.15 -0.73 4.63 -26.73 -0.12 -0.86 16 30 H 0.06 0.21 6.96 -51.93 -0.36 -0.15 16 31 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 32 H 0.08 0.36 6.00 -51.93 -0.31 0.04 16 33 H 0.08 0.51 8.07 -51.93 -0.42 0.09 16 34 H 0.09 0.89 7.42 -51.93 -0.39 0.50 16 35 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.35 5.80 8.43 -39.29 -0.33 5.47 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.37 7.90 5.76 -40.82 -0.24 7.66 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 45 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 46 H 0.07 0.45 7.80 -51.93 -0.41 0.04 16 47 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 50 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 51 H 0.09 0.35 4.53 -51.93 -0.24 0.12 16 LS Contribution 404.25 15.07 6.09 6.09 Total: -1.00 -35.93 404.25 -8.36 -44.29 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -8.52 Total: 10.57 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -0.92 Total: 5.62 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: -0.51 Total: -57.01 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: 0.17 Total: -23.00 kcal Atomic # 9 Polarization: -1.50 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.93 -8.36 -44.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754370488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.865 kcal (2) G-P(sol) polarization free energy of solvation -35.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds