Wall clock time and date at job start Wed Apr 1 2020 02:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 120.00628 * 2 1 4 4 C 1.52999 * 109.47346 * 270.00398 * 3 2 1 5 5 C 1.52996 * 109.47359 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47204 * 179.97438 * 5 4 3 7 7 C 1.46902 * 110.99825 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47180 * 179.97438 * 7 6 5 9 9 O 1.21296 * 119.99497 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00382 * 179.97438 * 8 7 6 11 11 C 1.37102 * 120.00262 * 180.02562 * 10 8 7 12 12 H 1.08000 * 119.99850 * 359.97438 * 11 10 8 13 13 C 1.38946 * 120.00093 * 179.97438 * 11 10 8 14 14 N 1.31408 * 120.00236 * 179.97438 * 13 11 10 15 15 Si 1.86807 * 119.99917 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47157 * 90.00391 * 15 13 11 17 17 H 1.48498 * 109.47013 * 210.00132 * 15 13 11 18 18 H 1.48493 * 109.47183 * 329.99765 * 15 13 11 19 19 C 1.34779 * 119.99457 * 180.02562 * 2 1 3 20 20 O 1.21284 * 119.99695 * 179.97438 * 19 2 1 21 21 C 1.50696 * 120.00395 * 0.02562 * 19 2 1 22 22 H 1.08996 * 109.47390 * 60.00019 * 21 19 2 23 23 C 1.52997 * 109.47242 * 180.02562 * 21 19 2 24 24 C 1.53006 * 109.47127 * 180.02562 * 23 21 19 25 25 C 1.52999 * 109.46626 * 299.99539 * 24 23 21 26 26 C 1.52997 * 109.46991 * 60.00378 * 25 24 23 27 27 H 1.09001 * 109.47289 * 179.97438 * 26 25 24 28 28 F 1.39901 * 109.47234 * 59.99869 * 26 25 24 29 29 C 1.52996 * 109.47131 * 299.99311 * 26 25 24 30 30 H 1.08999 * 109.47018 * 269.99958 * 1 2 3 31 31 H 1.09004 * 109.46971 * 29.99775 * 1 2 3 32 32 H 1.08998 * 109.47445 * 149.99490 * 1 2 3 33 33 H 1.09004 * 109.46598 * 29.99825 * 3 2 1 34 34 H 1.08999 * 109.47282 * 149.99692 * 3 2 1 35 35 H 1.09000 * 109.47153 * 299.99620 * 4 3 2 36 36 H 1.08999 * 109.47506 * 59.99432 * 4 3 2 37 37 H 1.09000 * 109.46839 * 300.00010 * 5 4 3 38 38 H 1.08999 * 109.47114 * 59.99389 * 5 4 3 39 39 H 1.00903 * 111.00465 * 56.04362 * 6 5 4 40 40 H 1.08997 * 109.47188 * 299.99357 * 7 6 5 41 41 H 1.08994 * 109.47541 * 59.99933 * 7 6 5 42 42 H 0.97001 * 120.00102 * 359.97438 * 10 8 7 43 43 H 0.96997 * 120.00570 * 179.97438 * 14 13 11 44 44 H 1.09001 * 109.47502 * 60.00161 * 23 21 19 45 45 H 1.09001 * 109.47289 * 299.99957 * 23 21 19 46 46 H 1.08993 * 109.46955 * 60.00011 * 24 23 21 47 47 H 1.09000 * 109.47050 * 179.97438 * 24 23 21 48 48 H 1.09002 * 109.46719 * 180.02562 * 25 24 23 49 49 H 1.08993 * 109.47839 * 299.99931 * 25 24 23 50 50 H 1.08996 * 109.47452 * 300.00000 * 29 26 25 51 51 H 1.09000 * 109.47054 * 180.02562 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7103 -1.4425 5 6 3.2171 3.0356 -1.4425 6 7 3.4625 3.4594 -2.8274 7 6 4.1969 4.7310 -2.8665 8 6 4.4301 5.1325 -4.3002 9 8 4.0248 4.4283 -5.2008 10 7 5.0889 6.2740 -4.5818 11 6 5.3006 6.6395 -5.8861 12 1 4.9398 6.0125 -6.6880 13 6 5.9794 7.8166 -6.1763 14 7 6.1828 8.1668 -7.4265 15 14 6.6030 8.9016 -4.7893 16 1 7.9812 8.4900 -4.4203 17 1 6.6120 10.3181 -5.2348 18 1 5.7114 8.7591 -3.6104 19 6 2.1387 -1.1673 -0.0005 20 8 3.3516 -1.1673 -0.0010 21 6 1.3852 -2.4723 -0.0017 22 1 0.7589 -2.5295 -0.8919 23 6 2.3794 -3.6353 -0.0014 24 6 1.6143 -4.9603 -0.0033 25 6 0.7334 -5.0422 1.2450 26 6 -0.2607 -3.8792 1.2448 27 1 -0.8886 -3.9378 2.1338 28 9 -1.0639 -3.9525 0.1016 29 6 0.5043 -2.5543 1.2466 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8900 -0.5138 32 1 -0.3634 -0.8899 -0.5139 33 1 1.6085 2.0283 0.5138 34 1 3.1499 1.1382 0.5139 35 1 3.0416 0.9507 -1.9564 36 1 1.5002 1.8407 -1.9563 37 1 2.6277 3.7950 -0.9287 38 1 4.1695 2.9056 -0.9285 39 1 2.5983 3.5244 -3.3442 40 1 3.6145 5.5026 -2.3630 41 1 5.1558 4.6125 -2.3623 42 1 5.4127 6.8374 -3.8616 43 1 6.6563 8.9887 -7.6292 44 1 3.0054 -3.5780 0.8891 45 1 3.0068 -3.5772 -0.8909 46 1 0.9887 -5.0173 -0.8939 47 1 2.3226 -5.7888 -0.0036 48 1 0.1887 -5.9863 1.2440 49 1 1.3590 -4.9852 2.1357 50 1 1.1300 -2.4972 2.1373 51 1 -0.2040 -1.7258 1.2469 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754370488.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:48 Heat of formation + Delta-G solvation = -157.930004 kcal Electronic energy + Delta-G solvation = -29686.354379 eV Core-core repulsion = 25340.346066 eV Total energy + Delta-G solvation = -4346.008312 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 343.206 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -48.57525 -41.38328 -40.32731 -38.30540 -37.54494 -36.58487 -35.91811 -33.79831 -33.36775 -31.74271 -31.32205 -28.94686 -27.74115 -26.59837 -25.10625 -23.86051 -23.52250 -22.49300 -21.31070 -20.83642 -20.27736 -20.14402 -18.18250 -17.90072 -17.46408 -17.24320 -16.99923 -16.73828 -16.38502 -16.32618 -15.96003 -15.78307 -15.64099 -15.45588 -15.09109 -14.89285 -14.57099 -14.38627 -14.33641 -14.13595 -14.04607 -13.68119 -13.37470 -13.33854 -13.09318 -12.97811 -12.90216 -12.76068 -12.65901 -12.48506 -12.44240 -12.41122 -12.12122 -11.98143 -11.71601 -11.69119 -11.53193 -11.46268 -11.01235 -10.63222 -10.47286 -10.26793 -9.69252 -9.33459 -8.42701 -6.04193 1.29409 1.35486 1.44234 1.56248 1.93072 1.98704 2.22302 2.72717 3.13318 3.30840 3.41306 3.52298 3.62499 3.87349 3.91701 4.01729 4.05809 4.09857 4.14250 4.15046 4.23668 4.33318 4.34594 4.39864 4.40966 4.48746 4.52423 4.54611 4.59535 4.62862 4.68407 4.78539 4.82312 4.95671 5.02274 5.05159 5.12979 5.15146 5.19479 5.21070 5.28040 5.43235 5.51230 5.55644 5.88968 6.04700 6.34626 6.38018 6.58204 6.85953 7.14001 7.37499 7.94247 8.75003 Molecular weight = 343.21amu Principal moments of inertia in cm(-1) A = 0.029368 B = 0.001510 C = 0.001499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.193538 B =18541.609138 C =18671.951920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.614 5.614 3 C 0.120 3.880 4 C -0.122 4.122 5 C 0.068 3.932 6 N -0.695 5.695 7 C 0.063 3.937 8 C 0.446 3.554 9 O -0.617 6.617 10 N -0.589 5.589 11 C -0.332 4.332 12 H 0.053 0.947 13 C -0.015 4.015 14 N -0.934 5.934 15 Si 0.967 3.033 16 H -0.258 1.258 17 H -0.273 1.273 18 H -0.230 1.230 19 C 0.510 3.490 20 O -0.582 6.582 21 C -0.100 4.100 22 H 0.102 0.898 23 C -0.100 4.100 24 C -0.118 4.118 25 C -0.147 4.147 26 C 0.092 3.908 27 H 0.113 0.887 28 F -0.226 7.226 29 C -0.144 4.144 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.038 0.962 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.344 0.656 40 H 0.082 0.918 41 H 0.111 0.889 42 H 0.391 0.609 43 H 0.280 0.720 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.084 0.916 49 H 0.093 0.907 50 H 0.091 0.909 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.494 -21.376 29.986 40.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.345 5.345 3 C -0.003 4.003 4 C -0.161 4.161 5 C -0.061 4.061 6 N -0.328 5.328 7 C -0.069 4.069 8 C 0.234 3.766 9 O -0.501 6.501 10 N -0.231 5.231 11 C -0.461 4.461 12 H 0.072 0.928 13 C -0.213 4.213 14 N -0.574 5.574 15 Si 0.787 3.213 16 H -0.183 1.183 17 H -0.198 1.198 18 H -0.153 1.153 19 C 0.299 3.701 20 O -0.462 6.462 21 C -0.122 4.122 22 H 0.120 0.880 23 C -0.138 4.138 24 C -0.156 4.156 25 C -0.184 4.184 26 C 0.056 3.944 27 H 0.131 0.869 28 F -0.207 7.207 29 C -0.181 4.181 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.128 0.872 34 H 0.087 0.913 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.163 0.837 40 H 0.100 0.900 41 H 0.129 0.871 42 H 0.226 0.774 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.102 0.898 49 H 0.112 0.888 50 H 0.110 0.890 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -15.530 -22.082 29.146 39.728 hybrid contribution 0.104 1.398 -0.404 1.459 sum -15.426 -20.684 28.742 38.625 Atomic orbital electron populations 1.22264 0.77276 1.04530 1.03518 1.47973 1.08410 1.05495 1.72664 1.21422 0.97966 0.85097 0.95815 1.21778 1.00173 0.96559 0.97625 1.21901 1.00358 0.95890 0.87953 1.60000 1.27640 1.30520 1.14661 1.21623 1.01651 0.92104 0.91517 1.21038 0.81567 0.81596 0.92394 1.90543 1.55212 1.54234 1.50156 1.42017 1.52509 1.21758 1.06816 1.19020 1.36223 1.07265 0.83636 0.92838 1.26143 0.96677 0.98356 1.00163 1.69803 1.41850 1.25435 1.20343 0.85337 0.79921 0.77692 0.78392 1.18275 1.19839 1.15279 1.21170 0.87558 0.86506 0.74860 1.90698 1.16070 1.88013 1.51389 1.21261 0.97814 0.91309 1.01775 0.88023 1.21336 0.96779 0.93335 1.02322 1.21500 0.98756 0.96634 0.98685 1.22185 0.98019 0.98617 0.99611 1.21723 0.91103 0.95594 0.85981 0.86945 1.92787 1.75784 1.97436 1.54713 1.22421 0.99364 0.99149 0.97211 0.89711 0.89685 0.90155 0.87199 0.91297 0.94284 0.91262 0.92443 0.90792 0.83698 0.90011 0.87070 0.77374 0.91084 0.91679 0.93236 0.92022 0.90500 0.89784 0.88804 0.89008 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.49 8.80 127.77 1.12 1.61 16 2 N -0.61 -9.44 2.87 -846.77 -2.43 -11.87 16 3 C 0.12 1.93 5.41 86.38 0.47 2.40 16 4 C -0.12 -2.57 5.80 30.59 0.18 -2.39 16 5 C 0.07 1.47 5.68 86.30 0.49 1.96 16 6 N -0.70 -21.68 6.12 -517.95 -3.17 -24.85 16 7 C 0.06 2.00 6.17 85.56 0.53 2.53 16 8 C 0.45 20.85 7.82 87.66 0.69 21.53 16 9 O -0.62 -35.56 15.78 -3.08 -0.05 -35.61 16 10 N -0.59 -28.45 5.09 -306.99 -1.56 -30.02 16 11 C -0.33 -19.90 10.16 84.04 0.85 -19.05 16 12 H 0.05 3.82 7.39 -2.91 -0.02 3.80 16 13 C -0.01 -0.83 5.50 84.93 0.47 -0.36 16 14 N -0.93 -57.01 13.96 21.66 0.30 -56.71 16 15 Si 0.97 39.13 27.74 68.60 1.90 41.04 16 16 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 17 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 18 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 19 C 0.51 10.48 7.08 87.66 0.62 11.10 16 20 O -0.58 -17.47 15.56 -3.04 -0.05 -17.52 16 21 C -0.10 -1.44 1.60 -11.54 -0.02 -1.46 16 22 H 0.10 1.47 7.06 -2.39 -0.02 1.45 16 23 C -0.10 -1.59 4.49 30.60 0.14 -1.45 16 24 C -0.12 -1.33 5.80 30.60 0.18 -1.15 16 25 C -0.15 -1.02 5.72 30.59 0.17 -0.84 16 26 C 0.09 0.63 4.12 30.59 0.13 0.76 16 27 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 28 F -0.23 -2.82 16.04 44.97 0.72 -2.09 16 29 C -0.14 -1.11 4.63 30.59 0.14 -0.97 16 30 H 0.08 0.25 6.96 -2.39 -0.02 0.24 16 31 H 0.08 0.50 8.07 -2.38 -0.02 0.49 16 32 H 0.08 0.57 6.00 -2.39 -0.01 0.56 16 33 H 0.11 1.05 8.07 -2.38 -0.02 1.03 16 34 H 0.07 1.37 7.42 -2.39 -0.02 1.36 16 35 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.34 11.23 8.43 -89.69 -0.76 10.47 16 40 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 42 H 0.39 15.48 5.76 -92.71 -0.53 14.95 16 43 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.06 1.10 8.10 -2.39 -0.02 1.08 16 45 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 46 H 0.06 0.79 7.80 -2.39 -0.02 0.77 16 47 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.10 0.50 4.53 -2.39 -0.01 0.49 16 Total: -1.00 -86.52 404.25 1.41 -85.11 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -0.41 Total: 38.30 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: 6.15 Total: 14.22 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -6.87 Total: -123.45 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: -0.10 Total: -53.12 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.72 Total: -2.09 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.90 Total: 41.04 kcal Total: -86.52 1.41 -85.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754370488.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.818 kcal (2) G-P(sol) polarization free energy of solvation -86.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds