Wall clock time and date at job start Wed Apr 1 2020 02:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38195 * 119.95189 * 2 1 4 4 C 1.38777 * 119.96301 * 180.02562 * 3 2 1 5 5 N 1.39894 * 120.07454 * 179.97438 * 4 3 2 6 6 C 1.46499 * 119.99719 * 0.02562 * 5 4 3 7 7 C 1.50701 * 109.46992 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.46497 * 119.99566 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46835 * 180.02562 * 10 9 7 12 12 H 1.07995 * 120.00280 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99788 * 180.02562 * 11 10 9 14 14 N 1.31511 * 120.00327 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46999 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46979 * 120.00025 * 15 13 11 18 18 H 1.48496 * 109.47443 * 239.99733 * 15 13 11 19 19 C 1.39118 * 119.85954 * 0.27366 * 4 3 2 20 20 F 1.35092 * 120.05517 * 179.72254 * 19 4 3 21 21 C 1.38242 * 119.89351 * 359.47172 * 19 4 3 22 22 C 1.38311 * 119.94903 * 180.02562 * 2 1 3 23 23 Br 1.89103 * 119.92661 * 359.97438 * 22 2 1 24 24 H 1.09000 * 109.46715 * 89.99770 * 1 2 3 25 25 H 1.08995 * 109.47580 * 210.00158 * 1 2 3 26 26 H 1.09002 * 109.46767 * 330.00732 * 1 2 3 27 27 H 1.07999 * 120.02007 * 0.03784 * 3 2 1 28 28 H 0.97000 * 119.99860 * 179.97438 * 5 4 3 29 29 H 1.09002 * 109.47391 * 59.99606 * 6 5 4 30 30 H 1.09001 * 109.46813 * 299.99662 * 6 5 4 31 31 H 0.96995 * 120.00011 * 0.02562 * 9 7 6 32 32 H 1.09001 * 109.47487 * 300.00114 * 10 9 7 33 33 H 1.09002 * 109.47182 * 60.00342 * 10 9 7 34 34 H 0.97000 * 120.00354 * 180.02562 * 14 13 11 35 35 H 1.08001 * 119.97922 * 180.23169 * 21 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1974 0.0000 4 6 3.5847 1.1977 -0.0005 5 7 4.2855 2.4084 -0.0011 6 6 3.5544 3.6779 -0.0005 7 6 4.5349 4.8223 -0.0006 8 8 5.7271 4.5993 -0.0016 9 7 4.0870 6.0935 -0.0007 10 6 5.0402 7.2059 -0.0014 11 6 4.2881 8.5118 -0.0007 12 1 3.2081 8.5130 0.0006 13 6 4.9788 9.7051 -0.0017 14 7 6.2939 9.7037 -0.0038 15 14 4.0465 11.3239 -0.0015 16 1 2.5862 11.0540 0.0004 17 1 4.4071 12.1026 1.2104 18 1 4.4051 12.1018 -1.2145 19 6 4.2776 -0.0087 -0.0068 20 9 5.6285 -0.0130 -0.0130 21 6 3.5815 -1.2031 -0.0015 22 6 2.1975 -1.1984 -0.0005 23 35 1.2484 -2.8340 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 1.6565 2.1324 0.0006 28 1 5.2555 2.4073 -0.0011 29 1 2.9284 3.7363 0.8899 30 1 2.9271 3.7363 -0.8901 31 1 3.1335 6.2717 -0.0003 32 1 5.6673 7.1477 0.8883 33 1 5.6664 7.1473 -0.8917 34 1 6.7798 10.5432 -0.0041 35 1 4.1180 -2.1404 -0.0026 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386069310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:51 Heat of formation + Delta-G solvation = -63.286004 kcal Electronic energy + Delta-G solvation = -20704.150245 eV Core-core repulsion = 17083.309538 eV Total energy + Delta-G solvation = -3620.840707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 344.028 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.91229 -39.90390 -38.99920 -35.90627 -34.37300 -32.69006 -32.47186 -31.76564 -29.52390 -28.00413 -26.99519 -25.77857 -23.12423 -22.22557 -21.40865 -19.99627 -18.31300 -17.46725 -16.80906 -16.44495 -15.92400 -15.62182 -15.37789 -15.32341 -14.79824 -14.45717 -14.30337 -14.11723 -13.72897 -13.60989 -13.42275 -12.77764 -12.35500 -12.29972 -12.14681 -12.06241 -11.87983 -11.45710 -11.28659 -11.05119 -10.98417 -10.42040 -10.36353 -9.93716 -9.50603 -9.39078 -8.99536 -8.86349 -8.10104 -7.64654 -6.25942 -4.33790 0.87568 0.94411 1.43781 2.97311 3.03569 3.17773 3.23691 3.25252 3.27866 3.90378 4.05502 4.27306 4.36285 4.56179 4.84062 5.03387 5.10544 5.15332 5.22723 5.25973 5.29845 5.33918 5.44777 5.55696 5.70788 5.89482 6.04171 6.34076 6.87449 7.14519 7.19583 7.37163 7.47505 7.53622 7.84980 8.39239 8.60935 8.85141 9.32994 10.84186 Molecular weight = 344.03amu Principal moments of inertia in cm(-1) A = 0.029862 B = 0.001982 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.434760 B =14127.112176 C =15038.794005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.011 4.011 3 C -0.179 4.179 4 C 0.219 3.781 5 N -0.719 5.719 6 C 0.100 3.900 7 C 0.492 3.508 8 O -0.550 6.550 9 N -0.704 5.704 10 C 0.249 3.751 11 C -0.546 4.546 12 H 0.065 0.935 13 C 0.064 3.936 14 N -0.884 5.884 15 Si 0.905 3.095 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.018 3.982 20 F -0.136 7.136 21 C -0.071 4.071 22 C -0.136 4.136 23 Br -0.051 7.051 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.141 0.859 28 H 0.418 0.582 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.394 0.606 32 H 0.029 0.971 33 H 0.029 0.971 34 H 0.266 0.734 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.053 -24.770 -0.009 28.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.014 4.014 3 C -0.203 4.203 4 C 0.111 3.889 5 N -0.349 5.349 6 C -0.029 4.029 7 C 0.276 3.724 8 O -0.430 6.430 9 N -0.352 5.352 10 C 0.128 3.872 11 C -0.584 4.584 12 H 0.083 0.917 13 C -0.140 4.140 14 N -0.521 5.521 15 Si 0.732 3.268 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.007 4.007 20 F -0.114 7.114 21 C -0.092 4.092 22 C -0.217 4.217 23 Br 0.034 6.966 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.159 0.841 28 H 0.258 0.742 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.227 0.773 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.398 -25.143 -0.010 28.490 hybrid contribution 0.088 1.448 -0.007 1.450 sum -13.310 -23.695 -0.018 27.178 Atomic orbital electron populations 1.21014 0.89984 1.03879 1.03351 1.19539 0.96529 0.90711 0.94640 1.20394 0.90784 0.98447 1.10682 1.17923 0.91932 0.85110 0.93928 1.44525 1.09900 1.01170 1.79339 1.21231 0.94853 0.83266 1.03501 1.20256 0.89322 0.84652 0.78196 1.90682 1.16655 1.84432 1.51190 1.46413 1.11522 1.05758 1.71498 1.19187 0.88199 0.81792 0.97987 1.21227 0.93328 0.90275 1.53573 0.91714 1.24964 0.94935 0.99571 0.94558 1.69976 1.06113 1.27414 1.48626 0.86335 0.79790 0.82807 0.77831 1.19583 1.20740 1.20735 1.16917 0.77234 0.92448 1.14066 1.91490 1.28056 1.97117 1.94780 1.20750 0.92673 0.97266 0.98488 1.21027 0.93407 0.91229 1.16056 1.96630 1.75130 1.26892 1.97996 0.90145 0.90345 0.90721 0.84115 0.74180 0.89060 0.89049 0.77330 0.95299 0.95291 0.92375 0.83973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.86 9.55 36.00 0.34 -0.51 16 2 C -0.01 -0.11 5.88 -104.61 -0.62 -0.72 16 3 C -0.18 -1.76 8.96 -39.40 -0.35 -2.12 16 4 C 0.22 2.63 6.66 -83.65 -0.56 2.07 16 5 N -0.72 -9.63 5.71 -59.73 -0.34 -9.97 16 6 C 0.10 1.23 5.40 -5.19 -0.03 1.20 16 7 C 0.49 8.86 7.90 -10.98 -0.09 8.77 16 8 O -0.55 -12.30 15.67 5.56 0.09 -12.21 16 9 N -0.70 -13.48 5.55 -61.47 -0.34 -13.82 16 10 C 0.25 6.27 5.43 -5.19 -0.03 6.24 16 11 C -0.55 -14.18 9.28 -34.44 -0.32 -14.50 16 12 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 14 N -0.88 -25.41 13.29 55.43 0.74 -24.67 16 15 Si 0.91 20.22 29.54 -169.99 -5.02 15.20 16 16 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 C 0.02 0.22 7.31 -39.25 -0.29 -0.07 16 20 F -0.14 -1.85 16.64 2.25 0.04 -1.81 16 21 C -0.07 -0.74 9.76 -39.52 -0.39 -1.13 16 22 C -0.14 -1.34 6.22 -39.49 -0.25 -1.58 16 23 Br -0.05 -0.44 31.77 -68.01 -2.16 -2.60 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.53 6.63 -51.93 -0.34 0.18 16 26 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.14 1.11 6.74 -52.49 -0.35 0.76 16 28 H 0.42 6.43 6.93 -40.82 -0.28 6.15 16 29 H 0.09 0.92 7.95 -51.93 -0.41 0.51 16 30 H 0.09 0.92 7.95 -51.93 -0.41 0.51 16 31 H 0.39 6.19 8.32 -40.82 -0.34 5.86 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -30.67 328.27 -8.51 -39.18 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -3.79 Total: 6.47 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -2.66 Total: -0.72 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.05 Total: -48.46 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.09 Total: -12.21 kcal Atomic # 9 Polarization: -1.85 SS G_CDS: 0.04 Total: -1.81 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.16 Total: -2.60 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.67 -8.51 -39.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386069310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.110 kcal (2) G-P(sol) polarization free energy of solvation -30.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds