Wall clock time and date at job start Wed Apr 1 2020 03:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86804 * 119.99704 * 2 1 4 4 H 1.48498 * 109.46884 * 269.99505 * 3 2 1 5 5 H 1.48497 * 109.47376 * 29.99594 * 3 2 1 6 6 H 1.48500 * 109.46917 * 150.00078 * 3 2 1 7 7 C 1.39937 * 120.00202 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00132 * 197.84457 * 7 2 1 9 9 C 1.41441 * 119.99766 * 17.85166 * 7 2 1 10 10 C 1.40789 * 120.17244 * 204.38899 * 9 7 2 11 11 C 1.37706 * 120.03792 * 179.97438 * 10 9 7 12 12 C 1.38375 * 120.41150 * 0.04189 * 11 10 9 13 13 C 1.39877 * 120.35812 * 359.96061 * 12 11 10 14 14 C 1.47889 * 120.02572 * 180.02562 * 13 12 11 15 15 O 1.21551 * 120.00156 * 179.97438 * 14 13 12 16 16 N 1.34781 * 119.99688 * 359.97438 * 14 13 12 17 17 N 1.40102 * 119.99616 * 179.97438 * 16 14 13 18 18 C 1.34783 * 119.99652 * 179.97438 * 17 16 14 19 19 O 1.21550 * 120.00025 * 0.02562 * 18 17 16 20 20 C 1.47783 * 119.99422 * 179.97438 * 18 17 16 21 21 C 1.39618 * 120.13663 * 359.72842 * 20 18 17 22 22 C 1.37894 * 119.86768 * 179.80939 * 21 20 18 23 23 C 1.38516 * 120.13024 * 0.44131 * 22 21 20 24 24 Cl 1.73599 * 119.86757 * 179.76684 * 23 22 21 25 25 C 1.38508 * 120.26487 * 359.78991 * 23 22 21 26 26 C 1.37894 * 120.13291 * 359.97438 * 25 23 22 27 27 C 1.39026 * 119.95282 * 0.02562 * 13 12 11 28 28 H 0.96991 * 120.00411 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.98469 * 0.02562 * 10 9 7 30 30 H 1.07998 * 119.79667 * 180.02562 * 11 10 9 31 31 H 1.08006 * 119.81831 * 179.97438 * 12 11 10 32 32 H 0.96996 * 120.00376 * 359.97438 * 16 14 13 33 33 H 0.97004 * 120.00332 * 359.97438 * 17 16 14 34 34 H 1.07996 * 120.06074 * 359.97438 * 21 20 18 35 35 H 1.07998 * 119.93406 * 180.18465 * 22 21 20 36 36 H 1.08003 * 119.93116 * 179.97438 * 25 23 22 37 37 H 1.08000 * 120.06801 * 179.97438 * 26 25 23 38 38 H 1.07996 * 120.20959 * 179.72299 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4001 5 1 1.4396 2.6528 0.6999 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2119 0.0005 8 1 3.0490 -1.2342 0.2871 9 6 1.3519 -2.4075 -0.3744 10 6 1.8271 -3.6500 0.0866 11 6 1.1858 -4.8122 -0.2798 12 6 0.0735 -4.7693 -1.1018 13 6 -0.4130 -3.5442 -1.5696 14 6 -1.6027 -3.5068 -2.4473 15 8 -2.0253 -2.4419 -2.8532 16 7 -2.2182 -4.6537 -2.7972 17 7 -3.3456 -4.6183 -3.6282 18 6 -3.9608 -5.7652 -3.9785 19 8 -3.5378 -6.8302 -3.5730 20 6 -5.1503 -5.7277 -4.8547 21 6 -5.6425 -4.5056 -5.3166 22 6 -6.7504 -4.4773 -6.1370 23 6 -7.3803 -5.6577 -6.4957 24 17 -8.7782 -5.6138 -7.5240 25 6 -6.8995 -6.8729 -6.0367 26 6 -5.7895 -6.9141 -5.2196 27 6 0.2226 -2.3615 -1.2089 28 1 -0.4850 0.8399 -0.0004 29 1 2.6945 -3.6916 0.7286 30 1 1.5534 -5.7632 0.0764 31 1 -0.4218 -5.6868 -1.3835 32 1 -1.8807 -5.5035 -2.4736 33 1 -3.6833 -3.7684 -3.9516 34 1 -5.1548 -3.5844 -5.0339 35 1 -7.1302 -3.5327 -6.4974 36 1 -7.3951 -7.7899 -6.3194 37 1 -5.4158 -7.8622 -4.8620 38 1 -0.1468 -1.4136 -1.5713 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042197607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:24:34 Heat of formation + Delta-G solvation = 0.040113 kcal Electronic energy + Delta-G solvation = -25227.887362 eV Core-core repulsion = 21254.989592 eV Total energy + Delta-G solvation = -3972.897770 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 344.071 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.70480 -39.48733 -38.50955 -37.15603 -36.86213 -35.20072 -33.85699 -32.41826 -31.52945 -30.90058 -29.60422 -29.33468 -25.43780 -24.47403 -23.34989 -22.65972 -21.41548 -21.00584 -20.10283 -18.51865 -17.81269 -17.59522 -16.79996 -15.94886 -15.82554 -15.51075 -15.30230 -15.10736 -14.72726 -14.39062 -14.29611 -14.14568 -13.90172 -13.76721 -13.32139 -12.86516 -12.69810 -12.61701 -12.04518 -11.96016 -11.76541 -11.34160 -11.31120 -11.20529 -11.10264 -10.81742 -10.58262 -10.44107 -10.19983 -9.79653 -9.61174 -9.38302 -9.30102 -9.28772 -8.28095 -7.74029 -7.62598 -6.88906 -4.50075 0.19830 0.77074 1.59225 1.88901 1.97482 2.41359 2.72800 3.03073 3.06327 3.09053 3.31638 3.66543 3.85556 3.93524 4.21570 4.33331 4.51647 4.54400 4.71274 4.82979 5.05557 5.40244 5.43284 5.49280 5.59043 5.66221 5.76839 5.98583 6.15446 6.18280 6.57400 6.73106 6.76779 6.89109 6.91904 7.11232 7.25777 7.55249 7.62241 7.78614 7.88644 7.88792 8.07005 8.39702 8.66342 8.71577 8.73784 10.05853 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.019280 B = 0.002006 C = 0.001826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.950038 B =13956.201515 C =15327.383764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.083 0.917 9 C 0.098 3.902 10 C -0.207 4.207 11 C -0.094 4.094 12 C -0.219 4.219 13 C -0.120 4.120 14 C 0.569 3.431 15 O -0.545 6.545 16 N -0.528 5.528 17 N -0.512 5.512 18 C 0.555 3.445 19 O -0.537 6.537 20 C -0.118 4.118 21 C -0.073 4.073 22 C -0.115 4.115 23 C -0.012 4.012 24 Cl -0.063 7.063 25 C -0.118 4.118 26 C -0.043 4.043 27 C -0.087 4.087 28 H 0.285 0.715 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.432 0.568 33 H 0.429 0.571 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.149 0.851 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.650 -8.509 -11.444 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.147 4.147 3 Si 0.736 3.264 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.096 3.904 10 C -0.227 4.227 11 C -0.112 4.112 12 C -0.239 4.239 13 C -0.125 4.125 14 C 0.361 3.639 15 O -0.421 6.421 16 N -0.280 5.280 17 N -0.258 5.258 18 C 0.342 3.658 19 O -0.414 6.414 20 C -0.123 4.123 21 C -0.092 4.092 22 C -0.133 4.133 23 C -0.039 4.039 24 Cl -0.034 7.034 25 C -0.136 4.136 26 C -0.062 4.062 27 C -0.108 4.108 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.110 0.890 32 H 0.277 0.723 33 H 0.272 0.728 34 H 0.157 0.843 35 H 0.161 0.839 36 H 0.161 0.839 37 H 0.167 0.833 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.973 -8.305 -11.503 19.914 hybrid contribution 0.088 0.761 -0.042 0.768 sum -13.886 -7.544 -11.545 19.571 Atomic orbital electron populations 1.69778 1.07605 1.29906 1.33390 1.25986 0.94800 1.01662 0.92229 0.86243 0.80392 0.80265 0.79493 1.19097 1.20184 1.18509 1.19616 0.98311 0.90946 1.39683 0.89878 1.17592 0.91086 0.92578 0.89194 1.21142 1.03398 0.92673 1.05478 1.20449 0.95769 0.96946 0.98054 1.20378 1.01487 0.94457 1.07572 1.19141 0.95646 0.95753 1.01980 1.19169 0.83324 0.81580 0.79844 1.90714 1.66210 1.29378 1.55799 1.45224 1.22449 1.12011 1.48301 1.44639 1.23564 1.10494 1.47093 1.18176 0.83363 0.83058 0.81246 1.90807 1.65853 1.29098 1.55611 1.19794 0.96791 0.94720 1.00979 1.21381 0.95200 0.97394 0.95224 1.21026 0.95894 0.97680 0.98740 1.21236 0.91090 0.95300 0.96262 1.98396 1.40092 1.98887 1.66045 1.21071 0.97023 0.97047 0.98487 1.21240 0.92770 0.98385 0.93854 1.21611 0.96390 0.96155 0.96621 0.90345 0.88359 0.88556 0.89004 0.72335 0.72785 0.84278 0.83926 0.83946 0.83300 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.94 10.96 55.55 0.61 -19.34 16 2 C 0.07 1.77 5.14 -17.34 -0.09 1.68 16 3 Si 0.91 18.14 29.60 -169.99 -5.03 13.11 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.46 -11.56 9.05 -37.73 -0.34 -11.90 16 8 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 9 C 0.10 2.50 5.57 -106.87 -0.60 1.90 16 10 C -0.21 -4.73 9.78 -38.81 -0.38 -5.11 16 11 C -0.09 -1.94 10.01 -39.73 -0.40 -2.34 16 12 C -0.22 -4.49 9.55 -38.92 -0.37 -4.86 16 13 C -0.12 -2.73 5.87 -105.04 -0.62 -3.35 16 14 C 0.57 11.87 7.89 -12.31 -0.10 11.77 16 15 O -0.54 -12.49 16.17 5.32 0.09 -12.40 16 16 N -0.53 -9.08 6.21 30.54 0.19 -8.89 16 17 N -0.51 -7.39 6.21 30.51 0.19 -7.20 16 18 C 0.55 7.51 7.89 -12.36 -0.10 7.42 16 19 O -0.54 -8.69 16.18 5.32 0.09 -8.61 16 20 C -0.12 -1.22 5.87 -104.97 -0.62 -1.84 16 21 C -0.07 -0.62 9.54 -39.19 -0.37 -0.99 16 22 C -0.11 -0.87 9.81 -39.60 -0.39 -1.25 16 23 C -0.01 -0.09 6.33 -39.38 -0.25 -0.34 16 24 Cl -0.06 -0.46 28.95 -51.86 -1.50 -1.96 16 25 C -0.12 -0.88 9.81 -39.61 -0.39 -1.27 16 26 C -0.04 -0.39 9.59 -39.19 -0.38 -0.76 16 27 C -0.09 -2.23 8.23 -38.44 -0.32 -2.55 16 28 H 0.29 6.67 8.30 -40.82 -0.34 6.33 16 29 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 30 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.09 1.61 6.38 -52.48 -0.33 1.27 16 32 H 0.43 7.09 6.02 -182.60 -1.10 6.00 16 33 H 0.43 5.54 6.03 -182.59 -1.10 4.44 16 34 H 0.14 0.99 6.40 -52.49 -0.34 0.65 16 35 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 36 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 37 H 0.15 1.28 7.65 -52.49 -0.40 0.88 16 38 H 0.14 3.71 5.74 -52.49 -0.30 3.41 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -29.54 352.18 -10.57 -40.11 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -4.81 Total: 13.67 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -5.69 Total: -13.80 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.99 Total: -35.43 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: 0.17 Total: -21.01 kcal Atomic # 14 Polarization: 18.14 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.50 Total: -1.96 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.54 -10.57 -40.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042197607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.149 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds