Wall clock time and date at job start Wed Apr 1 2020 02:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00253 * 2 1 4 4 H 1.48501 * 109.47457 * 239.99515 * 3 2 1 5 5 H 1.48500 * 109.47018 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47352 * 119.99522 * 3 2 1 7 7 C 1.38805 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99919 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99515 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99852 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47525 * 180.02562 * 10 9 7 12 12 O 1.20825 * 119.99718 * 359.97438 * 11 10 9 13 13 O 1.34232 * 120.00484 * 180.02562 * 11 10 9 14 14 C 1.45194 * 117.00275 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47358 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47339 * 179.97438 * 15 14 13 17 17 S 1.81398 * 109.47178 * 179.97438 * 16 15 14 18 18 O 1.42095 * 110.54225 * 68.37635 * 17 16 15 19 19 O 1.42100 * 110.54081 * 291.62780 * 17 16 15 20 20 C 1.76199 * 104.44793 * 180.02562 * 17 16 15 21 21 C 1.38237 * 119.99920 * 90.00439 * 20 17 16 22 22 C 1.38235 * 119.99712 * 180.02562 * 21 20 17 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00031 * 269.97621 * 20 17 16 26 26 H 0.97002 * 120.00024 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47217 * 59.99666 * 10 9 7 28 28 H 1.08998 * 109.47116 * 300.00317 * 10 9 7 29 29 H 1.08999 * 109.47521 * 59.99037 * 14 13 11 30 30 H 1.09002 * 109.46904 * 299.99371 * 14 13 11 31 31 H 1.09003 * 109.46732 * 59.99624 * 15 14 13 32 32 H 1.09002 * 109.46844 * 299.99707 * 15 14 13 33 33 H 1.09004 * 109.46514 * 59.99903 * 16 15 14 34 34 H 1.08994 * 109.47457 * 300.00175 * 16 15 14 35 35 H 1.08005 * 120.00088 * 359.96860 * 21 20 17 36 36 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 37 37 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 38 38 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 39 39 H 1.07999 * 119.99990 * 0.02562 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7954 -5.5015 0.0000 13 8 2.8404 -6.3390 0.0003 14 6 2.2608 -7.6702 -0.0009 15 6 3.3797 -8.7138 -0.0009 16 6 2.7688 -10.1165 -0.0015 17 16 4.0955 -11.3537 -0.0023 18 8 4.7946 -11.3358 1.2347 19 8 4.7945 -11.3345 -1.2393 20 6 3.2533 -12.9014 -0.0037 21 6 2.9232 -13.5075 -1.2015 22 6 2.2620 -14.7215 -1.2026 23 6 1.9318 -15.3298 -0.0060 24 6 2.2575 -14.7213 1.1917 25 6 2.9230 -13.5097 1.1928 26 1 -0.4850 0.8401 -0.0004 27 1 3.1244 -3.7314 0.8905 28 1 3.1243 -3.7314 -0.8894 29 1 1.6454 -7.7978 -0.8915 30 1 1.6438 -7.7986 0.8884 31 1 3.9953 -8.5863 0.8896 32 1 3.9964 -8.5852 -0.8904 33 1 2.1530 -10.2441 -0.8918 34 1 2.1524 -10.2449 0.8881 35 1 3.1812 -13.0322 -2.1364 36 1 2.0038 -15.1949 -2.1383 37 1 1.4156 -16.2785 -0.0070 38 1 1.9956 -15.1944 2.1265 39 1 3.1809 -13.0362 2.1286 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061175813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:24 Heat of formation + Delta-G solvation = -134.416811 kcal Electronic energy + Delta-G solvation = -23480.365967 eV Core-core repulsion = 19606.832614 eV Total energy + Delta-G solvation = -3873.533353 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.063 amu Computer time = 2.62 seconds Orbital eigenvalues (eV) -40.10179 -39.63264 -37.51929 -36.60240 -36.34380 -34.43431 -32.50058 -31.89191 -31.58870 -29.92466 -27.27578 -25.55595 -23.86232 -23.30209 -22.30628 -21.09827 -19.47290 -18.46574 -17.95973 -17.37420 -16.96184 -16.74773 -16.34888 -16.34826 -15.58071 -15.46391 -15.08869 -14.87898 -14.85813 -14.16009 -14.09340 -13.66833 -13.50794 -13.34452 -13.10787 -12.77231 -12.67305 -12.48518 -12.40267 -12.29693 -11.93438 -11.82712 -11.61993 -11.33289 -11.11832 -11.06982 -11.00884 -10.82298 -10.51238 -10.08764 -9.95855 -9.91681 -9.61503 -9.12093 -8.39205 -6.62719 -6.28737 -4.01848 -0.45831 0.27862 0.72428 2.37827 2.56071 2.59780 2.90471 3.21380 3.21690 3.26354 3.39710 3.52863 3.64777 4.10734 4.12440 4.14581 4.33068 4.33890 4.41927 4.51767 4.74642 4.76090 4.92482 4.96861 5.07172 5.10481 5.14728 5.20716 5.34830 5.42275 5.46346 5.51160 5.65387 5.65588 5.75334 5.78449 6.05729 6.25207 6.59980 7.53836 8.09723 8.28754 9.16715 10.78696 Molecular weight = 344.06amu Principal moments of inertia in cm(-1) A = 0.033556 B = 0.001600 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.236414 B =17496.259615 C =17847.499050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.075 3.925 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.076 0.924 9 S -0.059 6.059 10 C -0.130 4.130 11 C 0.481 3.519 12 O -0.488 6.488 13 O -0.361 6.361 14 C 0.074 3.926 15 C -0.116 4.116 16 C -0.606 4.606 17 S 2.501 3.499 18 O -0.932 6.932 19 O -0.932 6.932 20 C -0.661 4.661 21 C -0.024 4.024 22 C -0.141 4.141 23 C -0.066 4.066 24 C -0.141 4.141 25 C -0.024 4.024 26 H 0.270 0.730 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.134 0.866 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.045 -31.142 -0.009 31.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.685 4.685 8 H 0.094 0.906 9 S 0.168 5.832 10 C -0.277 4.277 11 C 0.322 3.678 12 O -0.373 6.373 13 O -0.280 6.280 14 C -0.002 4.002 15 C -0.154 4.154 16 C -0.735 4.735 17 S 2.681 3.319 18 O -0.929 6.929 19 O -0.929 6.929 20 C -0.747 4.747 21 C -0.043 4.043 22 C -0.160 4.160 23 C -0.084 4.084 24 C -0.160 4.160 25 C -0.043 4.043 26 H 0.080 0.920 27 H 0.122 0.878 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.161 0.839 36 H 0.151 0.849 37 H 0.149 0.851 38 H 0.151 0.849 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.271 -31.228 -0.008 31.519 hybrid contribution 0.777 0.741 -0.003 1.074 sum 5.048 -30.487 -0.012 30.902 Atomic orbital electron populations 1.69999 1.05997 1.27770 1.46493 1.25003 0.95069 0.99120 0.94282 0.86168 0.79198 0.80896 0.78932 1.19828 1.20779 1.19820 1.22807 0.95021 0.91131 1.59559 0.90574 1.85403 1.04333 0.96599 1.96909 1.23316 1.07052 0.90753 1.06621 1.23331 0.85150 0.87036 0.72289 1.90669 1.16915 1.85623 1.44109 1.86491 1.41367 1.15132 1.84961 1.22824 0.95015 0.78994 1.03366 1.21257 0.98870 0.89492 1.05793 1.30280 1.19032 1.11314 1.12860 1.05357 0.76341 0.75312 0.74908 1.93589 1.68745 1.86092 1.44460 1.93589 1.68756 1.86096 1.44449 1.30611 1.20525 1.24001 0.99589 1.21034 0.91844 0.94680 0.96750 1.21354 0.99849 0.96002 0.98771 1.21553 0.95281 0.98898 0.92665 1.21355 0.99827 0.96035 0.98759 1.21033 0.91840 0.94675 0.96766 0.92002 0.87770 0.87786 0.90671 0.90662 0.88716 0.88712 0.84030 0.84023 0.83905 0.84855 0.85118 0.84854 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 60. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.59 13.22 55.49 0.73 -24.86 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -14.96 9.50 30.94 0.29 -14.66 16 8 H 0.08 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.55 20.58 -107.50 -2.21 -3.76 16 10 C -0.13 -2.60 6.27 36.00 0.23 -2.37 16 11 C 0.48 8.98 7.98 36.00 0.29 9.27 16 12 O -0.49 -10.40 15.61 -18.75 -0.29 -10.69 16 13 O -0.36 -5.47 10.22 -39.26 -0.40 -5.87 16 14 C 0.07 0.84 5.47 37.16 0.20 1.04 16 15 C -0.12 -0.97 5.60 -26.73 -0.15 -1.12 16 16 C -0.61 -3.43 5.98 37.16 0.22 -3.21 16 17 S 2.50 19.72 5.16 -107.50 -0.55 19.17 16 18 O -0.93 -10.03 17.13 -57.54 -0.99 -11.02 16 19 O -0.93 -10.04 17.12 -57.54 -0.99 -11.02 16 20 C -0.66 -4.77 5.66 -39.58 -0.22 -5.00 16 21 C -0.02 -0.16 9.47 -39.58 -0.37 -0.54 16 22 C -0.14 -0.77 10.05 -39.58 -0.40 -1.17 16 23 C -0.07 -0.33 10.05 -39.58 -0.40 -0.72 16 24 C -0.14 -0.77 10.05 -39.58 -0.40 -1.17 16 25 C -0.02 -0.16 9.47 -39.58 -0.37 -0.54 16 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.10 1.93 8.14 -51.91 -0.42 1.50 16 28 H 0.10 1.92 8.14 -51.92 -0.42 1.50 16 29 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 30 H 0.08 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.14 0.51 8.14 -51.92 -0.42 0.09 16 34 H 0.14 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.14 0.77 7.57 -52.48 -0.40 0.37 16 36 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 37 H 0.13 0.32 8.06 -52.49 -0.42 -0.10 16 38 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 39 H 0.14 0.76 7.57 -52.49 -0.40 0.37 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -37.73 371.48 -10.29 -48.02 By element: Atomic # 1 Polarization: 1.61 SS G_CDS: -4.99 Total: -3.38 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.18 Total: -18.18 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.73 Total: -24.86 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -2.66 Total: -38.60 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 18.17 SS G_CDS: -2.77 Total: 15.41 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.73 -10.29 -48.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061175813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.398 kcal (2) G-P(sol) polarization free energy of solvation -37.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds