Wall clock time and date at job start Wed Apr 1 2020 02:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 120.00253 * 2 1 4 4 H 1.48501 * 109.47457 * 239.99515 * 3 2 1 5 5 H 1.48500 * 109.47018 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47352 * 119.99522 * 3 2 1 7 7 C 1.38805 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99919 * 179.97438 * 7 2 1 9 9 S 1.76200 * 119.99515 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99852 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47525 * 180.02562 * 10 9 7 12 12 O 1.20825 * 119.99718 * 359.97438 * 11 10 9 13 13 O 1.34232 * 120.00484 * 180.02562 * 11 10 9 14 14 C 1.45194 * 117.00275 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.47358 * 179.97438 * 14 13 11 16 16 C 1.53001 * 109.47339 * 179.97438 * 15 14 13 17 17 S 1.81398 * 109.47178 * 179.97438 * 16 15 14 18 18 O 1.42095 * 110.54225 * 68.37635 * 17 16 15 19 19 O 1.42100 * 110.54081 * 291.62780 * 17 16 15 20 20 C 1.76199 * 104.44793 * 180.02562 * 17 16 15 21 21 C 1.38237 * 119.99920 * 90.00439 * 20 17 16 22 22 C 1.38235 * 119.99712 * 180.02562 * 21 20 17 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00031 * 269.97621 * 20 17 16 26 26 H 0.97002 * 120.00024 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.47217 * 59.99666 * 10 9 7 28 28 H 1.08998 * 109.47116 * 300.00317 * 10 9 7 29 29 H 1.08999 * 109.47521 * 59.99037 * 14 13 11 30 30 H 1.09002 * 109.46904 * 299.99371 * 14 13 11 31 31 H 1.09003 * 109.46732 * 59.99624 * 15 14 13 32 32 H 1.09002 * 109.46844 * 299.99707 * 15 14 13 33 33 H 1.09004 * 109.46514 * 59.99903 * 16 15 14 34 34 H 1.08994 * 109.47457 * 300.00175 * 16 15 14 35 35 H 1.08005 * 120.00088 * 359.96860 * 21 20 17 36 36 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 37 37 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 38 38 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 39 39 H 1.07999 * 119.99990 * 0.02562 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7279 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7954 -5.5015 0.0000 13 8 2.8404 -6.3390 0.0003 14 6 2.2608 -7.6702 -0.0009 15 6 3.3797 -8.7138 -0.0009 16 6 2.7688 -10.1165 -0.0015 17 16 4.0955 -11.3537 -0.0023 18 8 4.7946 -11.3358 1.2347 19 8 4.7945 -11.3345 -1.2393 20 6 3.2533 -12.9014 -0.0037 21 6 2.9232 -13.5075 -1.2015 22 6 2.2620 -14.7215 -1.2026 23 6 1.9318 -15.3298 -0.0060 24 6 2.2575 -14.7213 1.1917 25 6 2.9230 -13.5097 1.1928 26 1 -0.4850 0.8401 -0.0004 27 1 3.1244 -3.7314 0.8905 28 1 3.1243 -3.7314 -0.8894 29 1 1.6454 -7.7978 -0.8915 30 1 1.6438 -7.7986 0.8884 31 1 3.9953 -8.5863 0.8896 32 1 3.9964 -8.5852 -0.8904 33 1 2.1530 -10.2441 -0.8918 34 1 2.1524 -10.2449 0.8881 35 1 3.1812 -13.0322 -2.1364 36 1 2.0038 -15.1949 -2.1383 37 1 1.4156 -16.2785 -0.0070 38 1 1.9956 -15.1944 2.1265 39 1 3.1809 -13.0362 2.1286 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061175813.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:14:24 Heat of formation + Delta-G solvation = -159.311419 kcal Electronic energy + Delta-G solvation = -23481.445478 eV Core-core repulsion = 19606.832614 eV Total energy + Delta-G solvation = -3874.612864 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.063 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.49087 -40.03530 -38.23580 -37.87477 -37.07318 -35.26109 -34.60469 -32.31286 -31.99112 -31.44866 -28.19475 -27.63022 -24.35608 -23.70945 -23.06438 -22.44685 -20.08181 -19.86989 -19.03792 -18.69922 -17.96421 -17.57161 -17.13885 -16.93513 -16.87533 -16.84128 -16.16888 -15.97688 -15.62112 -15.49919 -14.66734 -14.56447 -14.48007 -14.39813 -14.10608 -13.85611 -13.60133 -13.23360 -13.22964 -13.20034 -13.12720 -12.86924 -12.85388 -12.67112 -12.50707 -12.20759 -11.97564 -11.79952 -11.68588 -11.58286 -11.44895 -11.13862 -10.38729 -10.37834 -10.03657 -8.73019 -8.36865 -6.16545 -1.04574 -0.17661 0.30653 1.01692 1.11470 1.41732 1.45513 1.54454 1.80020 1.92112 2.24741 2.45762 2.88438 2.98266 3.09625 3.25376 3.46369 3.64760 3.68983 3.84940 3.96569 4.01930 4.11216 4.11653 4.19529 4.34576 4.39695 4.45493 4.46456 4.52169 4.71645 4.73456 4.84371 4.96821 5.09173 5.28065 5.28332 5.39809 5.41750 5.87197 6.18553 6.67388 7.04982 8.72037 Molecular weight = 344.06amu Principal moments of inertia in cm(-1) A = 0.033556 B = 0.001600 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.236414 B =17496.259615 C =17847.499050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.017 3.983 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.550 4.550 8 H 0.086 0.914 9 S -0.137 6.137 10 C -0.112 4.112 11 C 0.490 3.510 12 O -0.519 6.519 13 O -0.354 6.354 14 C 0.064 3.936 15 C -0.121 4.121 16 C -0.591 4.591 17 S 2.510 3.490 18 O -0.968 6.968 19 O -0.968 6.968 20 C -0.667 4.667 21 C -0.043 4.043 22 C -0.147 4.147 23 C -0.068 4.068 24 C -0.147 4.147 25 C -0.043 4.043 26 H 0.273 0.727 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.167 0.833 34 H 0.167 0.833 35 H 0.149 0.851 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.631 -32.210 -0.010 32.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.188 4.188 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.698 4.698 8 H 0.104 0.896 9 S 0.090 5.910 10 C -0.260 4.260 11 C 0.333 3.667 12 O -0.407 6.407 13 O -0.271 6.271 14 C -0.011 4.011 15 C -0.159 4.159 16 C -0.721 4.721 17 S 2.695 3.305 18 O -0.965 6.965 19 O -0.965 6.965 20 C -0.756 4.756 21 C -0.062 4.062 22 C -0.166 4.166 23 C -0.086 4.086 24 C -0.166 4.166 25 C -0.062 4.062 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.185 0.815 34 H 0.185 0.815 35 H 0.167 0.833 36 H 0.173 0.827 37 H 0.176 0.824 38 H 0.173 0.827 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.911 -32.325 -0.009 32.696 hybrid contribution 0.582 0.866 -0.002 1.043 sum 5.492 -31.459 -0.011 31.934 Atomic orbital electron populations 1.70152 1.07902 1.28848 1.47646 1.26102 0.95972 1.03234 0.93518 0.84994 0.77803 0.75631 0.79525 1.18693 1.20356 1.18683 1.23173 0.95544 0.91625 1.59430 0.89584 1.85488 1.09258 0.99060 1.97185 1.23117 1.04303 0.90176 1.08392 1.22935 0.84747 0.87359 0.71701 1.90662 1.18211 1.86095 1.45765 1.86453 1.40544 1.16034 1.84097 1.23230 0.96355 0.77339 1.04204 1.21331 0.98247 0.89853 1.06473 1.30162 1.18150 1.08264 1.15571 1.04769 0.76608 0.75802 0.73367 1.93538 1.70596 1.86837 1.45536 1.93539 1.70607 1.86840 1.45525 1.30371 1.21327 1.23608 1.00272 1.21275 0.92498 0.95562 0.96831 1.21699 0.99211 0.95570 1.00115 1.21948 0.94654 0.99749 0.92211 1.21700 0.99188 0.95601 1.00101 1.21274 0.92494 0.95555 0.96849 0.91846 0.85937 0.85949 0.89924 0.89919 0.88248 0.88242 0.81474 0.81467 0.83347 0.82733 0.82431 0.82729 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.40 13.22 21.65 0.29 -54.11 16 2 C 0.02 0.94 5.49 84.86 0.47 1.41 16 3 Si 1.00 42.66 29.55 68.60 2.03 44.69 16 4 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.55 -30.60 9.50 67.96 0.65 -29.96 16 8 H 0.09 4.44 7.80 -2.91 -0.02 4.41 16 9 S -0.14 -7.32 20.58 -56.49 -1.16 -8.48 16 10 C -0.11 -4.37 6.27 71.24 0.45 -3.92 16 11 C 0.49 17.87 7.98 71.24 0.57 18.43 16 12 O -0.52 -22.05 15.61 21.97 0.34 -21.71 16 13 O -0.35 -10.13 10.22 -51.43 -0.53 -10.65 16 14 C 0.06 1.33 5.47 71.98 0.39 1.73 16 15 C -0.12 -1.81 5.60 30.59 0.17 -1.63 16 16 C -0.59 -5.51 5.98 71.98 0.43 -5.08 16 17 S 2.51 38.60 5.16 -56.49 -0.29 38.31 16 18 O -0.97 -21.01 17.13 -127.65 -2.19 -23.20 16 19 O -0.97 -21.01 17.12 -127.65 -2.19 -23.20 16 20 C -0.67 -9.18 5.66 22.27 0.13 -9.06 16 21 C -0.04 -0.53 9.47 22.27 0.21 -0.32 16 22 C -0.15 -1.34 10.05 22.27 0.22 -1.11 16 23 C -0.07 -0.51 10.05 22.27 0.22 -0.29 16 24 C -0.15 -1.34 10.05 22.27 0.22 -1.11 16 25 C -0.04 -0.53 9.47 22.27 0.21 -0.32 16 26 H 0.27 15.17 8.31 -92.71 -0.77 14.39 16 27 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 28 H 0.12 4.35 8.14 -2.40 -0.02 4.33 16 29 H 0.08 1.64 8.13 -2.39 -0.02 1.62 16 30 H 0.08 1.64 8.13 -2.39 -0.02 1.62 16 31 H 0.10 1.40 8.14 -2.39 -0.02 1.39 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.17 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.17 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.15 1.52 7.57 -2.91 -0.02 1.50 16 36 H 0.15 0.63 8.06 -2.91 -0.02 0.60 16 37 H 0.16 0.27 8.06 -2.91 -0.02 0.24 16 38 H 0.16 0.63 8.06 -2.91 -0.02 0.60 16 39 H 0.15 1.52 7.57 -2.91 -0.02 1.50 16 Total: -1.00 -82.71 371.48 1.70 -81.00 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 1.06 Total: 8.59 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: 4.34 Total: -31.23 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.29 Total: -54.11 kcal Atomic # 8 Polarization: -74.20 SS G_CDS: -4.56 Total: -78.76 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 31.28 SS G_CDS: -1.45 Total: 29.82 kcal Total: -82.71 1.70 -81.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061175813.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.307 kcal (2) G-P(sol) polarization free energy of solvation -82.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds