Wall clock time and date at job start Wed Apr 1 2020 02:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99864 * 2 1 4 4 O 1.20820 * 120.00421 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99633 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.46964 * 180.02562 * 5 3 2 7 7 C 1.36944 * 119.99509 * 263.94106 * 6 5 3 8 8 H 1.08000 * 119.99491 * 209.16192 * 7 6 5 9 9 C 1.38803 * 120.00320 * 29.15616 * 7 6 5 10 10 N 1.31623 * 120.00087 * 353.14092 * 9 7 6 11 11 Si 1.86805 * 120.00244 * 173.13714 * 9 7 6 12 12 H 1.48504 * 109.46654 * 60.00023 * 11 9 7 13 13 H 1.48500 * 109.47281 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46793 * 300.00348 * 11 9 7 15 15 C 1.46492 * 120.00418 * 83.93603 * 6 5 3 16 16 C 1.50702 * 109.46929 * 89.99854 * 15 6 5 17 17 O 1.21293 * 120.00423 * 0.02562 * 16 15 6 18 18 N 1.34781 * 120.00067 * 180.27537 * 16 15 6 19 19 C 1.40074 * 120.00216 * 174.66675 * 18 16 15 20 20 C 1.38833 * 120.05046 * 33.93664 * 19 18 16 21 21 C 1.38124 * 119.96709 * 179.74759 * 20 19 18 22 22 C 1.38485 * 120.06455 * 0.55709 * 21 20 19 23 23 F 1.35100 * 119.95080 * 179.72189 * 22 21 20 24 24 C 1.38451 * 120.10157 * 359.69905 * 22 21 20 25 25 C 1.38228 * 120.03013 * 0.02562 * 24 22 21 26 26 Cl 1.73600 * 120.03188 * 179.97438 * 25 24 22 27 27 H 1.09007 * 109.46811 * 300.00445 * 1 2 3 28 28 H 1.09003 * 109.46909 * 59.99725 * 1 2 3 29 29 H 1.08992 * 109.47435 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46993 * 60.00067 * 5 3 2 31 31 H 1.09006 * 109.46992 * 299.99998 * 5 3 2 32 32 H 0.97003 * 120.00038 * 180.02562 * 10 9 7 33 33 H 1.09001 * 109.47363 * 330.00555 * 15 6 5 34 34 H 1.08995 * 109.47511 * 210.00027 * 15 6 5 35 35 H 0.97001 * 119.99506 * 354.66295 * 18 16 15 36 36 H 1.07998 * 120.01927 * 0.02562 * 20 19 18 37 37 H 1.07999 * 119.96293 * 180.25708 * 21 20 19 38 38 H 1.07998 * 119.98247 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.2954 3.3015 -1.1790 8 1 5.0132 4.1085 -1.1896 9 6 3.6910 2.8946 -2.3604 10 7 2.9210 1.8272 -2.3721 11 14 3.9703 3.8620 -3.9339 12 1 5.4197 3.8729 -4.2575 13 1 3.2191 3.2262 -5.0459 14 1 3.4940 5.2563 -3.7488 15 6 4.0615 3.4194 1.2621 16 6 5.4438 3.2723 1.8441 17 8 6.2802 2.6147 1.2618 18 7 5.7492 3.8673 3.0143 19 6 6.9959 3.6402 3.6111 20 6 8.1209 3.4497 2.8203 21 6 9.3503 3.2311 3.4107 22 6 9.4598 3.1902 4.7906 23 9 10.6625 2.9707 5.3656 24 6 8.3388 3.3745 5.5819 25 6 7.1074 3.5993 4.9954 26 17 5.7016 3.8297 5.9875 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7805 0.8892 32 1 2.4990 1.5426 -3.1978 33 1 3.3279 3.0217 1.9634 34 1 3.8547 4.4738 1.0790 35 1 5.1056 4.4528 3.4430 36 1 8.0357 3.4770 1.7440 37 1 10.2262 3.0871 2.7954 38 1 8.4264 3.3427 6.6578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080896708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:27 Heat of formation + Delta-G solvation = -107.182172 kcal Electronic energy + Delta-G solvation = -27538.921066 eV Core-core repulsion = 23130.604564 eV Total energy + Delta-G solvation = -4408.316502 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.077 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.02641 -40.38215 -39.04925 -38.32992 -36.66280 -35.85533 -34.63205 -34.33478 -31.59032 -31.11273 -29.64519 -28.35875 -26.74484 -25.98422 -23.61765 -23.05421 -21.97396 -20.32250 -19.70142 -18.21534 -17.66899 -17.04659 -16.96227 -16.33918 -16.04370 -15.72401 -15.51371 -15.18810 -15.02770 -14.80863 -14.67414 -14.03517 -13.79732 -13.59818 -13.54981 -13.42328 -13.06030 -12.88796 -12.39769 -12.27354 -11.70387 -11.53013 -11.42622 -11.27167 -11.21791 -10.99659 -10.95045 -10.47598 -10.29602 -10.22475 -10.16212 -9.70799 -9.58056 -9.18632 -9.08803 -8.61661 -8.10401 -7.07083 -6.01433 -3.48438 0.79620 0.94844 1.80670 2.93336 3.09118 3.33367 3.38320 3.39368 3.43127 3.78682 3.97534 4.12805 4.38820 4.50704 4.74116 5.02406 5.04892 5.17967 5.29782 5.38805 5.57030 5.74427 5.75525 5.80380 5.92367 6.00470 6.02475 6.08948 6.14867 6.28781 6.35209 6.67734 6.77437 7.13374 7.50296 7.62235 7.68424 8.13255 8.51652 8.92004 9.29717 9.55566 10.00366 11.08536 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.012860 B = 0.003173 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.801204 B = 8821.805147 C =10131.593332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.379 6.379 3 C 0.469 3.531 4 O -0.516 6.516 5 C 0.192 3.808 6 N -0.542 5.542 7 C -0.259 4.259 8 H 0.076 0.924 9 C 0.017 3.983 10 N -0.908 5.908 11 Si 0.918 3.082 12 H -0.281 1.281 13 H -0.289 1.289 14 H -0.282 1.282 15 C 0.135 3.865 16 C 0.480 3.520 17 O -0.498 6.498 18 N -0.682 5.682 19 C 0.165 3.835 20 C -0.087 4.087 21 C -0.126 4.126 22 C 0.082 3.918 23 F -0.138 7.138 24 C -0.128 4.128 25 C -0.049 4.049 26 Cl -0.056 7.056 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.081 0.919 30 H 0.128 0.872 31 H 0.044 0.956 32 H 0.261 0.739 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.410 0.590 36 H 0.164 0.836 37 H 0.143 0.857 38 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.711 1.883 14.497 15.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.296 6.296 3 C 0.311 3.689 4 O -0.402 6.402 5 C 0.063 3.937 6 N -0.259 5.259 7 C -0.387 4.387 8 H 0.093 0.907 9 C -0.181 4.181 10 N -0.552 5.552 11 Si 0.747 3.253 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.208 1.208 15 C 0.003 3.997 16 C 0.267 3.733 17 O -0.369 6.369 18 N -0.330 5.330 19 C 0.068 3.932 20 C -0.107 4.107 21 C -0.146 4.146 22 C 0.062 3.938 23 F -0.117 7.117 24 C -0.148 4.148 25 C -0.079 4.079 26 Cl -0.027 7.027 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.145 0.855 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.247 0.753 36 H 0.181 0.819 37 H 0.161 0.839 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 5.800 1.615 13.885 15.134 hybrid contribution -0.472 0.792 -0.426 1.016 sum 5.328 2.408 13.459 14.674 Atomic orbital electron populations 1.22868 0.79716 1.01443 1.01220 1.86540 1.20973 1.36493 1.85635 1.25365 0.93496 0.80123 0.69955 1.90452 1.66853 1.36489 1.46374 1.20252 0.84944 0.86321 1.02160 1.43270 1.74316 1.06975 1.01355 1.19109 1.19101 1.16259 0.84228 0.90650 1.25097 0.96502 0.97446 0.99049 1.69633 1.34219 1.23991 1.27352 0.86133 0.77598 0.79667 0.81890 1.20750 1.21515 1.20773 1.20711 0.89444 0.99480 0.90109 1.23735 0.93699 0.77419 0.78483 1.90634 1.49839 1.38188 1.58236 1.44204 1.14690 1.49373 1.24743 1.17699 0.87279 0.99049 0.89217 1.21339 0.89030 0.98156 1.02178 1.21215 0.99301 1.01366 0.92679 1.17388 0.80589 1.04742 0.91099 1.91502 1.42651 1.92463 1.85040 1.20705 0.89881 1.03263 1.00954 1.20430 0.89095 1.08543 0.89785 1.98374 1.39746 1.95439 1.69144 0.93579 0.92899 0.90020 0.85477 0.93782 0.92851 0.90587 0.89150 0.75307 0.81890 0.83898 0.83681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.56 101.05 1.07 1.80 16 2 O -0.38 -8.08 10.57 -39.27 -0.41 -8.49 16 3 C 0.47 11.13 6.07 36.01 0.22 11.35 16 4 O -0.52 -13.45 15.87 -18.75 -0.30 -13.75 16 5 C 0.19 4.47 5.48 -5.19 -0.03 4.44 16 6 N -0.54 -12.73 1.52 -175.99 -0.27 -13.00 16 7 C -0.26 -6.69 9.61 -15.06 -0.14 -6.83 16 8 H 0.08 1.92 7.84 -52.49 -0.41 1.51 16 9 C 0.02 0.46 5.37 -17.43 -0.09 0.37 16 10 N -0.91 -24.85 8.62 55.49 0.48 -24.37 16 11 Si 0.92 21.29 29.56 -169.99 -5.02 16.26 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 15 C 0.13 2.50 6.12 -5.20 -0.03 2.47 16 16 C 0.48 8.24 7.75 -10.98 -0.09 8.16 16 17 O -0.50 -10.20 13.78 5.55 0.08 -10.13 16 18 N -0.68 -9.12 5.06 -9.82 -0.05 -9.17 16 19 C 0.17 2.18 6.32 -83.61 -0.53 1.65 16 20 C -0.09 -1.17 8.71 -39.40 -0.34 -1.51 16 21 C -0.13 -1.46 10.02 -39.53 -0.40 -1.85 16 22 C 0.08 0.93 7.30 -39.41 -0.29 0.64 16 23 F -0.14 -1.58 17.26 2.25 0.04 -1.54 16 24 C -0.13 -1.37 9.80 -39.51 -0.39 -1.75 16 25 C -0.05 -0.56 6.34 -39.33 -0.25 -0.81 16 26 Cl -0.06 -0.58 27.94 -51.86 -1.45 -2.02 16 27 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 28 H 0.05 0.97 8.13 -51.93 -0.42 0.54 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.13 3.27 6.40 -51.93 -0.33 2.93 16 31 H 0.04 0.93 8.12 -51.93 -0.42 0.51 16 32 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.08 1.30 8.07 -51.93 -0.42 0.88 16 34 H 0.09 1.58 8.04 -51.93 -0.42 1.16 16 35 H 0.41 4.44 8.06 -40.82 -0.33 4.11 16 36 H 0.16 2.49 6.12 -52.49 -0.32 2.17 16 37 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -31.21 352.44 -6.79 -38.00 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -3.90 Total: 4.78 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: -1.29 Total: 18.11 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.16 Total: -46.54 kcal Atomic # 8 Polarization: -31.73 SS G_CDS: -0.64 Total: -32.36 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -1.45 Total: -2.02 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.21 -6.79 -38.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080896708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.183 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds