Wall clock time and date at job start Wed Apr 1 2020 02:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34233 * 116.99864 * 2 1 4 4 O 1.20820 * 120.00421 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99633 * 180.02562 * 3 2 1 6 6 N 1.46500 * 109.46964 * 180.02562 * 5 3 2 7 7 C 1.36944 * 119.99509 * 263.94106 * 6 5 3 8 8 H 1.08000 * 119.99491 * 209.16192 * 7 6 5 9 9 C 1.38803 * 120.00320 * 29.15616 * 7 6 5 10 10 N 1.31623 * 120.00087 * 353.14092 * 9 7 6 11 11 Si 1.86805 * 120.00244 * 173.13714 * 9 7 6 12 12 H 1.48504 * 109.46654 * 60.00023 * 11 9 7 13 13 H 1.48500 * 109.47281 * 180.02562 * 11 9 7 14 14 H 1.48498 * 109.46793 * 300.00348 * 11 9 7 15 15 C 1.46492 * 120.00418 * 83.93603 * 6 5 3 16 16 C 1.50702 * 109.46929 * 89.99854 * 15 6 5 17 17 O 1.21293 * 120.00423 * 0.02562 * 16 15 6 18 18 N 1.34781 * 120.00067 * 180.27537 * 16 15 6 19 19 C 1.40074 * 120.00216 * 174.66675 * 18 16 15 20 20 C 1.38833 * 120.05046 * 33.93664 * 19 18 16 21 21 C 1.38124 * 119.96709 * 179.74759 * 20 19 18 22 22 C 1.38485 * 120.06455 * 0.55709 * 21 20 19 23 23 F 1.35100 * 119.95080 * 179.72189 * 22 21 20 24 24 C 1.38451 * 120.10157 * 359.69905 * 22 21 20 25 25 C 1.38228 * 120.03013 * 0.02562 * 24 22 21 26 26 Cl 1.73600 * 120.03188 * 179.97438 * 25 24 22 27 27 H 1.09007 * 109.46811 * 300.00445 * 1 2 3 28 28 H 1.09003 * 109.46909 * 59.99725 * 1 2 3 29 29 H 1.08992 * 109.47435 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46993 * 60.00067 * 5 3 2 31 31 H 1.09006 * 109.46992 * 299.99998 * 5 3 2 32 32 H 0.97003 * 120.00038 * 180.02562 * 10 9 7 33 33 H 1.09001 * 109.47363 * 330.00555 * 15 6 5 34 34 H 1.08995 * 109.47511 * 210.00027 * 15 6 5 35 35 H 0.97001 * 119.99506 * 354.66295 * 18 16 15 36 36 H 1.07998 * 120.01927 * 0.02562 * 20 19 18 37 37 H 1.07999 * 119.96293 * 180.25708 * 21 20 19 38 38 H 1.07998 * 119.98247 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6797 0.0002 7 6 4.2954 3.3015 -1.1790 8 1 5.0132 4.1085 -1.1896 9 6 3.6910 2.8946 -2.3604 10 7 2.9210 1.8272 -2.3721 11 14 3.9703 3.8620 -3.9339 12 1 5.4197 3.8729 -4.2575 13 1 3.2191 3.2262 -5.0459 14 1 3.4940 5.2563 -3.7488 15 6 4.0615 3.4194 1.2621 16 6 5.4438 3.2723 1.8441 17 8 6.2802 2.6147 1.2618 18 7 5.7492 3.8673 3.0143 19 6 6.9959 3.6402 3.6111 20 6 8.1209 3.4497 2.8203 21 6 9.3503 3.2311 3.4107 22 6 9.4598 3.1902 4.7906 23 9 10.6625 2.9707 5.3656 24 6 8.3388 3.3745 5.5819 25 6 7.1074 3.5993 4.9954 26 17 5.7016 3.8297 5.9875 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.9557 0.7809 -0.8908 31 1 3.9564 0.7805 0.8892 32 1 2.4990 1.5426 -3.1978 33 1 3.3279 3.0217 1.9634 34 1 3.8547 4.4738 1.0790 35 1 5.1056 4.4528 3.4430 36 1 8.0357 3.4770 1.7440 37 1 10.2262 3.0871 2.7954 38 1 8.4264 3.3427 6.6578 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080896708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:21:26 Heat of formation + Delta-G solvation = -124.545528 kcal Electronic energy + Delta-G solvation = -27539.673998 eV Core-core repulsion = 23130.604564 eV Total energy + Delta-G solvation = -4409.069434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.077 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.93825 -41.57067 -40.79384 -39.52924 -37.62277 -37.48149 -36.37387 -35.63641 -33.43738 -32.05720 -30.94512 -29.89797 -28.25074 -27.66479 -24.80876 -24.30930 -23.30452 -21.78200 -21.31016 -19.35262 -18.91538 -18.49620 -18.35619 -17.93681 -17.26106 -17.22544 -16.89357 -16.63935 -16.57632 -16.16849 -15.83368 -15.45615 -15.04156 -14.97067 -14.85143 -14.62455 -14.25086 -14.02301 -13.94627 -13.93461 -13.23490 -12.90245 -12.72861 -12.70100 -12.59399 -12.39940 -12.27713 -12.16400 -12.13990 -12.00807 -11.39713 -11.38036 -11.19563 -10.83834 -10.54354 -10.04835 -9.15021 -8.89760 -7.99105 -5.45960 -0.16250 0.00104 0.90298 1.47575 1.49713 1.55143 1.64202 1.87618 1.99449 2.35035 2.42613 2.52310 3.20046 3.28328 3.49993 3.59573 3.82451 3.94588 4.09710 4.31154 4.39844 4.46179 4.48378 4.51578 4.56296 4.62942 4.73579 4.84664 4.97245 5.01229 5.09570 5.23959 5.33915 5.59544 5.73418 5.91807 6.20755 6.40173 6.98169 7.20986 7.46315 7.69465 8.09814 9.08487 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.012860 B = 0.003173 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2176.801204 B = 8821.805147 C =10131.593332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.385 6.385 3 C 0.474 3.526 4 O -0.544 6.544 5 C 0.194 3.806 6 N -0.560 5.560 7 C -0.260 4.260 8 H 0.074 0.926 9 C -0.033 4.033 10 N -0.928 5.928 11 Si 0.973 3.027 12 H -0.277 1.277 13 H -0.296 1.296 14 H -0.279 1.279 15 C 0.133 3.867 16 C 0.491 3.509 17 O -0.535 6.535 18 N -0.666 5.666 19 C 0.147 3.853 20 C -0.100 4.100 21 C -0.123 4.123 22 C 0.084 3.916 23 F -0.136 7.136 24 C -0.120 4.120 25 C -0.045 4.045 26 Cl -0.041 7.041 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.125 0.875 30 H 0.100 0.900 31 H 0.065 0.935 32 H 0.251 0.749 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.423 0.577 36 H 0.142 0.858 37 H 0.159 0.841 38 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.053 2.194 16.476 17.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.302 6.302 3 C 0.317 3.683 4 O -0.433 6.433 5 C 0.066 3.934 6 N -0.278 5.278 7 C -0.389 4.389 8 H 0.092 0.908 9 C -0.229 4.229 10 N -0.574 5.574 11 Si 0.801 3.199 12 H -0.202 1.202 13 H -0.222 1.222 14 H -0.205 1.205 15 C 0.003 3.997 16 C 0.278 3.722 17 O -0.410 6.410 18 N -0.314 5.314 19 C 0.050 3.950 20 C -0.121 4.121 21 C -0.143 4.143 22 C 0.064 3.936 23 F -0.115 7.115 24 C -0.139 4.139 25 C -0.075 4.075 26 Cl -0.012 7.012 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.143 0.857 30 H 0.117 0.883 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.111 0.889 34 H 0.119 0.881 35 H 0.262 0.738 36 H 0.159 0.841 37 H 0.177 0.823 38 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 6.155 1.950 15.935 17.193 hybrid contribution -0.542 0.677 -0.876 1.233 sum 5.613 2.627 15.058 16.283 Atomic orbital electron populations 1.23192 0.77211 1.04248 1.00941 1.86496 1.23413 1.35173 1.85101 1.25341 0.93636 0.80261 0.69103 1.90422 1.67516 1.37497 1.47855 1.20111 0.85044 0.86618 1.01659 1.43364 1.74854 1.07291 1.02313 1.19315 1.18482 1.15692 0.85415 0.90820 1.25752 0.97066 0.98415 1.01642 1.69795 1.35413 1.25105 1.27084 0.85261 0.77433 0.78369 0.78790 1.20230 1.22207 1.20542 1.20860 0.90615 0.99634 0.88622 1.23082 0.92632 0.77265 0.79220 1.90636 1.50563 1.40126 1.59631 1.43775 1.15307 1.48779 1.23552 1.17766 0.86723 1.00460 0.90013 1.21183 0.90122 0.99488 1.01290 1.21330 0.99148 1.00580 0.93224 1.17434 0.80848 1.04318 0.90999 1.91513 1.42621 1.92401 1.84941 1.20957 0.89086 1.01715 1.02167 1.20413 0.89980 1.07891 0.89178 1.98384 1.39011 1.95315 1.68539 0.92529 0.94521 0.85710 0.88262 0.91768 0.93894 0.88926 0.88146 0.73761 0.84084 0.82339 0.81235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.25 10.56 113.37 1.20 2.45 16 2 O -0.38 -16.21 10.57 -51.45 -0.54 -16.75 16 3 C 0.47 22.57 6.07 71.24 0.43 23.00 16 4 O -0.54 -28.51 15.87 21.98 0.35 -28.17 16 5 C 0.19 9.18 5.48 85.63 0.47 9.65 16 6 N -0.56 -26.52 1.52 -710.70 -1.08 -27.60 16 7 C -0.26 -13.61 9.61 84.03 0.81 -12.80 16 8 H 0.07 3.79 7.84 -2.91 -0.02 3.77 16 9 C -0.03 -1.80 5.37 84.86 0.46 -1.34 16 10 N -0.93 -51.98 8.62 21.65 0.19 -51.79 16 11 Si 0.97 44.41 29.56 68.60 2.03 46.44 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 13 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 14 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 15 C 0.13 4.88 6.12 85.64 0.52 5.40 16 16 C 0.49 16.67 7.75 87.66 0.68 17.35 16 17 O -0.54 -22.19 13.78 -3.07 -0.04 -22.23 16 18 N -0.67 -17.05 5.06 -303.35 -1.53 -18.59 16 19 C 0.15 3.71 6.32 38.13 0.24 3.95 16 20 C -0.10 -2.66 8.71 22.39 0.19 -2.47 16 21 C -0.12 -2.70 10.02 22.30 0.22 -2.48 16 22 C 0.08 1.72 7.30 22.38 0.16 1.89 16 23 F -0.14 -2.79 17.26 44.97 0.78 -2.01 16 24 C -0.12 -2.22 9.80 22.32 0.22 -2.00 16 25 C -0.05 -0.94 6.34 22.43 0.14 -0.80 16 26 Cl -0.04 -0.75 27.94 -2.72 -0.08 -0.83 16 27 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.04 1.32 8.13 -2.39 -0.02 1.30 16 29 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.10 5.27 6.40 -2.39 -0.02 5.25 16 31 H 0.06 2.70 8.12 -2.38 -0.02 2.68 16 32 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 33 H 0.09 3.06 8.07 -2.39 -0.02 3.04 16 34 H 0.10 3.43 8.04 -2.39 -0.02 3.41 16 35 H 0.42 8.44 8.06 -92.71 -0.75 7.69 16 36 H 0.14 4.44 6.12 -2.91 -0.02 4.42 16 37 H 0.16 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.17 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -67.60 352.44 6.20 -61.41 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: 0.38 Total: 18.32 kcal Atomic # 6 Polarization: 36.05 SS G_CDS: 5.75 Total: 41.80 kcal Atomic # 7 Polarization: -95.56 SS G_CDS: -2.43 Total: -97.98 kcal Atomic # 8 Polarization: -66.91 SS G_CDS: -0.24 Total: -67.15 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.78 Total: -2.01 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -67.60 6.20 -61.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080896708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.139 kcal (2) G-P(sol) polarization free energy of solvation -67.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds