Wall clock time and date at job start Wed Apr 1 2020 02:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47539 * 2 1 4 4 C 1.46500 * 120.00282 * 270.00416 * 3 2 1 5 5 C 1.50704 * 109.46716 * 269.99941 * 4 3 2 6 6 H 1.07998 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00084 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00086 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99901 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46965 * 90.00243 * 9 7 5 11 11 H 1.48501 * 109.47201 * 210.00295 * 9 7 5 12 12 H 1.48500 * 109.47442 * 330.00565 * 9 7 5 13 13 C 1.34775 * 120.00135 * 89.99624 * 3 2 1 14 14 O 1.21279 * 120.00300 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99773 * 0.02562 * 13 3 2 16 16 O 1.45206 * 109.47147 * 179.97438 * 15 13 3 17 17 C 1.34715 * 117.00191 * 179.97438 * 16 15 13 18 18 O 1.21490 * 119.99774 * 0.02562 * 17 16 15 19 19 C 1.47637 * 120.00206 * 179.97438 * 17 16 15 20 20 C 1.40052 * 120.56148 * 359.71990 * 19 17 16 21 21 C 1.38545 * 118.27905 * 179.75814 * 20 19 17 22 22 F 1.35094 * 120.35387 * 180.26284 * 21 20 19 23 23 C 1.38580 * 119.29133 * 0.56378 * 21 20 19 24 24 N 1.31912 * 121.08173 * 359.67623 * 23 21 20 25 25 C 1.31797 * 121.89585 * 0.02562 * 24 23 21 26 26 Cl 1.73607 * 119.71403 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47221 * 300.00363 * 1 2 3 28 28 H 1.09006 * 109.46809 * 60.00184 * 1 2 3 29 29 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47221 * 239.99637 * 2 1 3 31 31 H 1.09002 * 109.46764 * 120.00327 * 2 1 3 32 32 H 1.08997 * 109.47188 * 29.99019 * 4 3 2 33 33 H 1.09000 * 109.47702 * 149.99942 * 4 3 2 34 34 H 0.97003 * 119.99677 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46980 * 59.99839 * 15 13 3 36 36 H 1.09004 * 109.47113 * 299.99819 * 15 13 3 37 37 H 1.07999 * 120.85998 * 0.02562 * 20 19 17 38 38 H 1.07997 * 119.45560 * 179.69940 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3903 -2.8774 8 7 5.3917 2.1840 -3.2568 9 14 3.0133 3.4360 -3.9286 10 1 3.1161 4.8561 -3.5067 11 1 3.4069 3.3138 -5.3553 12 1 1.6137 2.9696 -3.7595 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9922 1.3059 2.4723 16 8 2.3072 2.1953 3.5760 17 6 2.1355 1.7099 4.8208 18 8 1.7340 0.5744 4.9800 19 6 2.4363 2.5575 5.9917 20 6 2.9062 3.8658 5.8218 21 6 3.1686 4.6211 6.9533 22 9 3.6182 5.8898 6.8381 23 6 2.9707 4.0591 8.2045 24 7 2.5317 2.8219 8.3337 25 6 2.2625 2.0658 7.2883 26 17 1.6867 0.4450 7.5240 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 5.7178 2.5745 -4.0827 35 1 2.6227 0.4186 2.5298 36 1 0.9443 1.0114 2.5302 37 1 3.0561 4.2768 4.8344 38 1 3.1790 4.6439 9.0883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767746292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:06 Heat of formation + Delta-G solvation = -112.578036 kcal Electronic energy + Delta-G solvation = -26987.601188 eV Core-core repulsion = 22579.050703 eV Total energy + Delta-G solvation = -4408.550484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.077 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.52256 -41.25368 -40.15175 -39.07695 -37.10430 -36.53573 -35.50143 -33.59395 -32.80790 -31.44240 -30.52456 -29.44790 -27.24201 -25.62184 -24.30313 -23.11506 -22.53880 -21.60532 -19.08953 -18.73634 -18.04878 -17.81498 -17.26440 -17.10119 -16.82327 -16.61210 -16.32855 -16.05740 -15.39358 -14.95797 -14.65164 -14.46949 -14.29450 -14.01549 -13.64441 -13.57683 -13.28180 -12.97154 -12.71215 -12.47283 -12.29037 -11.99479 -11.92976 -11.88841 -11.53250 -11.09484 -11.00400 -10.98159 -10.71159 -10.68287 -10.57284 -10.22618 -10.18761 -9.61711 -9.46966 -9.21606 -8.64688 -7.90190 -6.14336 -4.14106 -0.32512 0.22445 1.25543 2.00185 2.02890 2.88300 3.06643 3.23737 3.25172 3.30740 3.32801 3.55304 3.74094 4.00775 4.06428 4.33314 4.34201 4.61115 4.67322 4.87157 4.98980 5.05861 5.18738 5.19540 5.23191 5.43436 5.59830 5.70075 5.86583 6.02184 6.05499 6.29844 6.59007 6.79047 6.83300 7.15998 7.36083 7.52896 8.02483 8.38488 8.72112 8.88780 9.44971 10.98880 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.002717 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.245124 B =10303.374115 C =11693.567878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 N -0.586 5.586 4 C 0.218 3.782 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.518 6.518 15 C 0.053 3.947 16 O -0.323 6.323 17 C 0.509 3.491 18 O -0.476 6.476 19 C -0.130 4.130 20 C -0.037 4.037 21 C 0.045 3.955 22 F -0.115 7.115 23 C 0.125 3.875 24 N -0.455 5.455 25 C 0.214 3.786 26 Cl 0.024 6.976 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.180 0.820 38 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.304 -0.881 21.339 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.023 4.023 3 N -0.319 5.319 4 C 0.098 3.902 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.294 3.706 14 O -0.394 6.394 15 C -0.024 4.024 16 O -0.238 6.238 17 C 0.350 3.650 18 O -0.364 6.364 19 C -0.135 4.135 20 C -0.063 4.063 21 C 0.023 3.977 22 F -0.094 7.094 23 C -0.034 4.034 24 N -0.165 5.165 25 C 0.049 3.951 26 Cl 0.053 6.947 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.120 0.880 36 H 0.118 0.882 37 H 0.197 0.803 38 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -9.234 -1.029 22.018 23.898 hybrid contribution -0.264 0.776 -1.510 1.718 sum -9.498 -0.254 20.508 22.602 Atomic orbital electron populations 1.22249 0.96414 1.01961 1.02340 1.21561 0.93696 0.83482 1.03602 1.47871 1.64049 1.13584 1.06429 1.19712 0.97575 0.93423 0.79453 1.21307 0.95237 1.33231 1.07330 0.90667 1.24850 0.95004 0.95743 0.97318 1.69892 1.15108 1.44794 1.23558 0.86856 0.81408 0.81626 0.79830 1.19842 1.21010 1.19038 1.19669 0.79508 0.87122 0.84262 1.90717 1.44391 1.17559 1.86734 1.23025 1.03160 0.92576 0.83678 1.86558 1.78583 1.44861 1.13755 1.20482 0.75701 0.85502 0.83270 1.90949 1.40883 1.18135 1.86428 1.19581 1.07471 0.94912 0.91492 1.22212 0.91432 0.91555 1.01142 1.18636 1.02353 0.81842 0.94895 1.91608 1.86262 1.34807 1.96690 1.23164 0.93088 0.90429 0.96705 1.67346 1.12323 1.05066 1.31763 1.21904 0.94702 0.90617 0.87849 1.98487 1.85055 1.13983 1.97205 0.93011 0.91957 0.91613 0.89099 0.91307 0.94829 0.94391 0.92467 0.88005 0.88216 0.80289 0.79679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 37.16 0.38 -1.61 16 2 C 0.10 1.44 5.93 -4.05 -0.02 1.42 16 3 N -0.59 -11.33 2.46 -175.06 -0.43 -11.76 16 4 C 0.22 5.10 4.23 -5.19 -0.02 5.07 16 5 C -0.53 -14.83 9.94 -34.44 -0.34 -15.18 16 6 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.11 13.96 55.43 0.77 -26.33 16 9 Si 0.88 21.00 27.47 -169.99 -4.67 16.33 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 13 C 0.51 9.89 7.75 -10.98 -0.09 9.81 16 14 O -0.52 -12.29 16.08 -14.10 -0.23 -12.52 16 15 C 0.05 0.76 4.51 36.01 0.16 0.93 16 16 O -0.32 -4.77 9.08 -47.21 -0.43 -5.20 16 17 C 0.51 6.63 7.90 34.57 0.27 6.91 16 18 O -0.48 -6.59 13.78 -19.26 -0.27 -6.86 16 19 C -0.13 -1.44 5.89 -104.81 -0.62 -2.06 16 20 C -0.04 -0.36 9.72 -38.79 -0.38 -0.74 16 21 C 0.04 0.37 7.33 -39.34 -0.29 0.08 16 22 F -0.12 -1.00 17.28 2.25 0.04 -0.96 16 23 C 0.12 0.90 11.16 -17.39 -0.19 0.71 16 24 N -0.45 -4.39 10.32 -9.95 -0.10 -4.49 16 25 C 0.21 2.32 7.31 -17.00 -0.12 2.20 16 26 Cl 0.02 0.26 26.19 -51.86 -1.36 -1.10 16 27 H 0.05 0.57 7.22 -51.93 -0.38 0.19 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.09 1.36 8.07 -51.93 -0.42 0.95 16 31 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 32 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 33 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 34 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.10 1.33 7.40 -51.93 -0.38 0.95 16 36 H 0.10 1.20 7.18 -51.93 -0.37 0.83 16 37 H 0.18 1.74 7.70 -52.49 -0.40 1.33 16 38 H 0.19 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 353.46 15.07 5.33 5.33 Total: -1.00 -33.97 353.46 -6.57 -40.54 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -3.87 Total: -2.53 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -1.36 Total: 9.53 kcal Atomic # 7 Polarization: -42.82 SS G_CDS: 0.24 Total: -42.58 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.92 Total: -24.57 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.04 Total: -0.96 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.36 Total: -1.10 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.97 -6.57 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767746292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.034 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds