Wall clock time and date at job start Wed Apr 1 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47539 * 2 1 4 4 C 1.46500 * 120.00282 * 270.00416 * 3 2 1 5 5 C 1.50704 * 109.46716 * 269.99941 * 4 3 2 6 6 H 1.07998 * 120.00154 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00084 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00086 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99901 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.46965 * 90.00243 * 9 7 5 11 11 H 1.48501 * 109.47201 * 210.00295 * 9 7 5 12 12 H 1.48500 * 109.47442 * 330.00565 * 9 7 5 13 13 C 1.34775 * 120.00135 * 89.99624 * 3 2 1 14 14 O 1.21279 * 120.00300 * 180.02562 * 13 3 2 15 15 C 1.50703 * 119.99773 * 0.02562 * 13 3 2 16 16 O 1.45206 * 109.47147 * 179.97438 * 15 13 3 17 17 C 1.34715 * 117.00191 * 179.97438 * 16 15 13 18 18 O 1.21490 * 119.99774 * 0.02562 * 17 16 15 19 19 C 1.47637 * 120.00206 * 179.97438 * 17 16 15 20 20 C 1.40052 * 120.56148 * 359.71990 * 19 17 16 21 21 C 1.38545 * 118.27905 * 179.75814 * 20 19 17 22 22 F 1.35094 * 120.35387 * 180.26284 * 21 20 19 23 23 C 1.38580 * 119.29133 * 0.56378 * 21 20 19 24 24 N 1.31912 * 121.08173 * 359.67623 * 23 21 20 25 25 C 1.31797 * 121.89585 * 0.02562 * 24 23 21 26 26 Cl 1.73607 * 119.71403 * 180.02562 * 25 24 23 27 27 H 1.09003 * 109.47221 * 300.00363 * 1 2 3 28 28 H 1.09006 * 109.46809 * 60.00184 * 1 2 3 29 29 H 1.09005 * 109.47543 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47221 * 239.99637 * 2 1 3 31 31 H 1.09002 * 109.46764 * 120.00327 * 2 1 3 32 32 H 1.08997 * 109.47188 * 29.99019 * 4 3 2 33 33 H 1.09000 * 109.47702 * 149.99942 * 4 3 2 34 34 H 0.97003 * 119.99677 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.46980 * 59.99839 * 15 13 3 36 36 H 1.09004 * 109.47113 * 299.99819 * 15 13 3 37 37 H 1.07999 * 120.85998 * 0.02562 * 20 19 17 38 38 H 1.07997 * 119.45560 * 179.69940 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7037 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3903 -2.8774 8 7 5.3917 2.1840 -3.2568 9 14 3.0133 3.4360 -3.9286 10 1 3.1161 4.8561 -3.5067 11 1 3.4069 3.3138 -5.3553 12 1 1.6137 2.9696 -3.7595 13 6 2.2430 2.0165 1.1672 14 8 2.6469 3.1600 1.1672 15 6 1.9922 1.3059 2.4723 16 8 2.3072 2.1953 3.5760 17 6 2.1355 1.7099 4.8208 18 8 1.7340 0.5744 4.9800 19 6 2.4363 2.5575 5.9917 20 6 2.9062 3.8658 5.8218 21 6 3.1686 4.6211 6.9533 22 9 3.6182 5.8898 6.8381 23 6 2.9707 4.0591 8.2045 24 7 2.5317 2.8219 8.3337 25 6 2.2625 2.0658 7.2883 26 17 1.6867 0.4450 7.5240 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.5818 1.6877 -2.0284 33 1 2.0957 3.1410 -1.1384 34 1 5.7178 2.5745 -4.0827 35 1 2.6227 0.4186 2.5298 36 1 0.9443 1.0114 2.5302 37 1 3.0561 4.2768 4.8344 38 1 3.1790 4.6439 9.0883 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767746292.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:11:05 Heat of formation + Delta-G solvation = -133.980460 kcal Electronic energy + Delta-G solvation = -26988.529266 eV Core-core repulsion = 22579.050703 eV Total energy + Delta-G solvation = -4409.478563 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.077 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.21674 -42.17986 -41.18660 -40.43849 -37.97656 -37.60644 -37.01891 -34.88900 -34.36620 -32.21460 -32.01908 -30.76045 -28.85059 -26.50625 -25.13375 -24.48058 -24.07216 -22.65693 -20.34054 -19.80804 -19.14041 -18.90530 -18.60173 -18.23074 -17.98986 -17.77849 -17.33007 -17.09676 -16.78155 -16.36277 -15.86513 -15.36028 -15.31449 -15.12222 -14.85610 -14.76418 -14.51340 -14.14398 -14.05533 -13.78979 -13.75010 -13.40070 -13.17521 -12.81115 -12.78875 -12.56437 -12.42725 -12.16006 -12.02269 -11.83802 -11.81049 -11.74428 -11.47762 -11.05377 -10.83408 -10.78751 -10.20306 -9.53175 -8.34075 -6.39730 -1.09146 -0.52523 0.45989 0.96130 1.09840 1.34020 1.37790 1.45864 1.56796 2.10716 2.22033 2.31146 2.53718 3.00131 3.01607 3.16753 3.31752 3.37719 3.59297 3.74678 3.94350 3.96053 4.14806 4.16026 4.37321 4.50805 4.59473 4.75850 4.85388 4.95788 4.99251 5.01243 5.04542 5.37350 5.44846 5.55825 6.07711 6.20524 6.32336 6.54339 6.62287 7.14737 7.28256 8.82765 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.014510 B = 0.002717 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.245124 B =10303.374115 C =11693.567878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.092 3.908 3 N -0.592 5.592 4 C 0.227 3.773 5 C -0.538 4.538 6 H 0.030 0.970 7 C 0.012 3.988 8 N -0.945 5.945 9 Si 0.946 3.054 10 H -0.276 1.276 11 H -0.277 1.277 12 H -0.235 1.235 13 C 0.502 3.498 14 O -0.573 6.573 15 C 0.063 3.937 16 O -0.339 6.339 17 C 0.512 3.488 18 O -0.486 6.486 19 C -0.143 4.143 20 C -0.040 4.040 21 C 0.050 3.950 22 F -0.115 7.115 23 C 0.146 3.854 24 N -0.464 5.464 25 C 0.211 3.789 26 Cl 0.016 6.984 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.022 0.978 34 H 0.268 0.732 35 H 0.119 0.881 36 H 0.132 0.868 37 H 0.174 0.826 38 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.389 -0.828 22.645 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.030 4.030 3 N -0.324 5.324 4 C 0.105 3.895 5 C -0.577 4.577 6 H 0.049 0.951 7 C -0.186 4.186 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.202 1.202 11 H -0.202 1.202 12 H -0.158 1.158 13 C 0.289 3.711 14 O -0.452 6.452 15 C -0.014 4.014 16 O -0.255 6.255 17 C 0.355 3.645 18 O -0.374 6.374 19 C -0.148 4.148 20 C -0.066 4.066 21 C 0.028 3.972 22 F -0.093 7.093 23 C -0.012 4.012 24 N -0.174 5.174 25 C 0.046 3.954 26 Cl 0.045 6.955 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.137 0.863 36 H 0.149 0.851 37 H 0.191 0.809 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -11.355 -1.037 23.344 25.980 hybrid contribution 0.486 0.758 -1.801 2.013 sum -10.869 -0.279 21.543 24.132 Atomic orbital electron populations 1.22185 0.93672 1.03922 1.02316 1.21905 0.95882 0.80720 1.04501 1.47957 1.63817 1.15346 1.05269 1.19373 0.95013 0.93199 0.81938 1.21558 0.97052 1.32256 1.06826 0.95147 1.25841 0.96681 0.97158 0.98953 1.70049 1.17449 1.46508 1.24491 0.85736 0.80581 0.79042 0.77741 1.20162 1.20180 1.15834 1.20488 0.78134 0.86694 0.85797 1.90680 1.46803 1.20052 1.87708 1.22923 1.05344 0.91822 0.81275 1.86554 1.79060 1.45391 1.14454 1.20719 0.75211 0.85629 0.82949 1.90935 1.41539 1.18544 1.86392 1.19445 1.09256 0.95285 0.90822 1.22193 0.91449 0.91336 1.01623 1.18628 1.02036 0.81636 0.94863 1.91617 1.86225 1.34800 1.96702 1.23786 0.90373 0.89530 0.97541 1.67444 1.12915 1.05882 1.31148 1.21914 0.94898 0.90579 0.87974 1.98479 1.85180 1.14649 1.97204 0.92077 0.92962 0.88605 0.90106 0.88647 0.92692 0.95993 0.92254 0.86327 0.85062 0.80876 0.75632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 10.24 71.98 0.74 -2.55 16 2 C 0.09 2.47 5.93 86.38 0.51 2.99 16 3 N -0.59 -22.68 2.46 -826.17 -2.03 -24.71 16 4 C 0.23 10.59 4.23 85.63 0.36 10.95 16 5 C -0.54 -30.93 9.94 25.60 0.25 -30.67 16 6 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 7 C 0.01 0.69 5.47 84.65 0.46 1.15 16 8 N -0.94 -59.06 13.96 21.45 0.30 -58.76 16 9 Si 0.95 43.40 27.47 68.60 1.88 45.28 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 13 C 0.50 19.52 7.75 87.66 0.68 20.20 16 14 O -0.57 -27.99 16.08 15.77 0.25 -27.74 16 15 C 0.06 1.75 4.51 71.24 0.32 2.07 16 16 O -0.34 -9.90 9.08 -49.86 -0.45 -10.36 16 17 C 0.51 13.01 7.90 70.30 0.56 13.56 16 18 O -0.49 -12.87 13.78 19.87 0.27 -12.60 16 19 C -0.14 -3.09 5.89 -19.99 -0.12 -3.20 16 20 C -0.04 -0.75 9.72 22.78 0.22 -0.53 16 21 C 0.05 0.74 7.33 22.42 0.16 0.90 16 22 F -0.12 -1.78 17.28 44.97 0.78 -1.00 16 23 C 0.15 1.70 11.16 84.76 0.95 2.65 16 24 N -0.46 -7.97 10.32 -185.40 -1.91 -9.89 16 25 C 0.21 4.32 7.31 85.06 0.62 4.94 16 26 Cl 0.02 0.34 26.19 -2.72 -0.07 0.26 16 27 H 0.06 1.13 7.22 -2.39 -0.02 1.11 16 28 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.08 2.35 8.07 -2.39 -0.02 2.33 16 31 H 0.10 2.05 6.44 -2.39 -0.02 2.04 16 32 H 0.06 2.34 7.13 -2.39 -0.02 2.32 16 33 H 0.02 1.10 6.85 -2.39 -0.02 1.09 16 34 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 35 H 0.12 2.91 7.40 -2.39 -0.02 2.89 16 36 H 0.13 2.82 7.18 -2.38 -0.02 2.80 16 37 H 0.17 3.43 7.70 -2.91 -0.02 3.41 16 38 H 0.23 0.69 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -77.40 353.46 5.81 -71.59 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.07 Total: 5.45 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: 5.72 Total: 22.47 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -3.64 Total: -93.36 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: 0.07 Total: -50.70 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.78 Total: -1.00 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.28 kcal Atomic # 17 Polarization: 0.34 SS G_CDS: -0.07 Total: 0.26 kcal Total: -77.40 5.81 -71.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767746292.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.389 kcal (2) G-P(sol) polarization free energy of solvation -77.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds