Wall clock time and date at job start Wed Apr 1 2020 02:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86796 * 119.99770 * 2 1 4 4 H 1.48510 * 109.46915 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47356 * 299.99145 * 3 2 1 6 6 H 1.48501 * 109.47381 * 59.99704 * 3 2 1 7 7 C 1.38798 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99966 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99819 * 0.02562 * 7 2 1 10 10 C 1.80998 * 99.99869 * 179.97438 * 9 7 2 11 11 C 1.50705 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99850 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99988 * 179.97438 * 11 10 9 14 14 C 1.46493 * 120.00157 * 180.02562 * 13 11 10 15 15 C 1.53004 * 109.47443 * 180.02562 * 14 13 11 16 16 N 1.46895 * 109.47035 * 179.97438 * 15 14 13 17 17 C 1.46906 * 110.99789 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47109 * 179.97438 * 17 16 15 19 19 C 1.38162 * 119.97884 * 104.72605 * 18 17 16 20 20 C 1.38700 * 119.95881 * 179.76862 * 19 18 17 21 21 O 1.35923 * 120.04425 * 180.23077 * 20 19 18 22 22 C 1.38743 * 119.91201 * 0.50845 * 20 19 18 23 23 C 1.38124 * 119.95660 * 359.74387 * 22 20 19 24 24 C 1.38349 * 119.97781 * 285.00160 * 18 17 16 25 25 Cl 1.73598 * 119.95631 * 359.97438 * 24 18 17 26 26 H 0.97008 * 120.00337 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47429 * 59.99889 * 10 9 7 28 28 H 1.08996 * 109.47422 * 299.99959 * 10 9 7 29 29 H 0.97000 * 119.99905 * 359.97438 * 13 11 10 30 30 H 1.09007 * 109.47336 * 59.99621 * 14 13 11 31 31 H 1.09005 * 109.46885 * 300.00162 * 14 13 11 32 32 H 1.08996 * 109.46863 * 59.99760 * 15 14 13 33 33 H 1.09002 * 109.46661 * 299.99937 * 15 14 13 34 34 H 1.00902 * 111.00273 * 303.95364 * 16 15 14 35 35 H 1.08992 * 109.47459 * 299.99826 * 17 16 15 36 36 H 1.09004 * 109.47040 * 59.99976 * 17 16 15 37 37 H 1.08001 * 120.02058 * 359.97438 * 19 18 17 38 38 H 0.96698 * 113.99750 * 270.27731 * 21 20 19 39 39 H 1.08005 * 120.02064 * 179.72876 * 22 20 19 40 40 H 1.08001 * 119.97457 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3431 0.0008 14 6 2.3304 -7.7150 0.0008 15 6 3.5024 -8.6986 0.0009 16 7 2.9872 -10.0742 0.0016 17 6 4.0870 -11.0482 0.0011 18 6 3.5210 -12.4449 0.0025 19 6 3.5426 -13.1997 -1.1546 20 6 3.0260 -14.4868 -1.1516 21 8 3.0506 -15.2326 -2.2878 22 6 2.4788 -15.0101 0.0110 23 6 2.4543 -14.2505 1.1644 24 6 2.9750 -12.9684 1.1609 25 17 2.9432 -12.0157 2.6117 26 1 -0.4851 0.8401 -0.0004 27 1 3.1244 -3.7313 0.8905 28 1 3.1244 -3.7314 -0.8894 29 1 3.8008 -6.1835 -0.0003 30 1 1.7213 -7.8751 -0.8890 31 1 1.7220 -7.8752 0.8910 32 1 4.1109 -8.5384 0.8909 33 1 4.1110 -8.5385 -0.8891 34 1 2.3679 -10.2280 0.7832 35 1 4.6990 -10.9047 -0.8892 36 1 4.7002 -10.9042 0.8907 37 1 3.9645 -12.7888 -2.0599 38 1 2.2668 -15.1275 -2.8443 39 1 2.0720 -16.0106 0.0141 40 1 2.0281 -14.6574 2.0695 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799201.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:35:53 Heat of formation + Delta-G solvation = -64.798820 kcal Electronic energy + Delta-G solvation = -23178.887863 eV Core-core repulsion = 19338.622417 eV Total energy + Delta-G solvation = -3840.265446 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47083 -39.19227 -38.03778 -36.87726 -36.38520 -34.40569 -32.42768 -32.20417 -30.34854 -29.75189 -27.84248 -25.53782 -25.09248 -23.34067 -22.34411 -21.96969 -20.35540 -18.63712 -17.85688 -17.38245 -17.00078 -16.36425 -16.25911 -15.91177 -15.85131 -15.13205 -14.84977 -14.79680 -14.58722 -14.26731 -13.90068 -13.62155 -13.49749 -13.29732 -13.08166 -12.70426 -12.57364 -12.40551 -12.13933 -11.90491 -11.64800 -11.51991 -11.44096 -11.06934 -11.01700 -10.99122 -10.75579 -9.80583 -9.60979 -9.40988 -9.07690 -9.05675 -8.89429 -8.86576 -8.22662 -6.49611 -6.21560 -3.92014 0.45382 0.64022 1.61234 2.79261 3.02187 3.10820 3.21680 3.27540 3.31915 3.58050 3.62831 4.04029 4.16757 4.20482 4.23141 4.57308 4.59459 4.73430 4.83619 4.89073 4.99326 5.13682 5.16574 5.20010 5.22802 5.31658 5.50180 5.61439 5.68840 5.75751 5.78467 5.88732 5.90994 6.02528 6.14072 6.43733 6.61272 6.88004 7.06054 7.60049 7.69734 8.35612 8.61734 9.23861 10.85916 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.027915 B = 0.001522 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.807042 B =18387.959819 C =18727.527257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.516 6.516 13 N -0.739 5.739 14 C 0.123 3.877 15 C 0.049 3.951 16 N -0.680 5.680 17 C 0.095 3.905 18 C -0.054 4.054 19 C -0.116 4.116 20 C 0.112 3.888 21 O -0.497 6.497 22 C -0.135 4.135 23 C -0.091 4.091 24 C -0.042 4.042 25 Cl -0.063 7.063 26 H 0.268 0.732 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.398 0.602 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.347 0.653 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.140 0.860 38 H 0.395 0.605 39 H 0.138 0.862 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.059 -32.060 0.180 33.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.390 6.390 13 N -0.394 5.394 14 C -0.002 4.002 15 C -0.080 4.080 16 N -0.312 5.312 17 C -0.034 4.034 18 C -0.055 4.055 19 C -0.135 4.135 20 C 0.068 3.932 21 O -0.308 6.308 22 C -0.154 4.154 23 C -0.110 4.110 24 C -0.070 4.070 25 Cl -0.034 7.034 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.231 0.769 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.166 0.834 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.158 0.842 38 H 0.252 0.748 39 H 0.156 0.844 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.339 -32.397 -0.159 33.453 hybrid contribution 2.271 1.544 0.853 2.875 sum 10.610 -30.853 0.694 32.634 Atomic orbital electron populations 1.70030 1.05951 1.27343 1.46941 1.24996 0.95029 0.99041 0.94550 0.86112 0.79569 0.81879 0.77898 1.19632 1.20558 1.20575 1.22913 0.94953 0.91653 1.58833 0.90865 1.85414 1.04937 0.96331 1.96709 1.23528 1.06572 0.95333 1.04938 1.20298 0.86502 0.86222 0.75167 1.90710 1.15357 1.85573 1.47341 1.45888 1.09953 1.05398 1.78173 1.21123 0.95663 0.80353 1.03049 1.22117 0.96740 0.87676 1.01509 1.60408 1.18207 1.01733 1.50889 1.20908 0.92908 0.87130 1.02438 1.19503 0.98294 0.96257 0.91459 1.21296 1.01003 0.92932 0.98260 1.18501 0.97905 0.89735 0.87087 1.84826 1.46607 1.66538 1.32855 1.21408 1.00625 1.00952 0.92374 1.20928 0.98934 0.92099 0.99050 1.20881 1.04087 0.93593 0.88404 1.98391 1.97132 1.71784 1.36107 0.92234 0.89236 0.89171 0.76892 0.90590 0.91816 0.94285 0.90003 0.83388 0.89265 0.93089 0.84197 0.74788 0.84401 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.53 9.98 7.85 -10.98 -0.09 9.90 16 12 O -0.52 -11.89 15.86 5.55 0.09 -11.80 16 13 N -0.74 -9.74 5.56 -60.29 -0.33 -10.07 16 14 C 0.12 1.44 5.93 -4.04 -0.02 1.41 16 15 C 0.05 0.41 5.80 -3.82 -0.02 0.38 16 16 N -0.68 -5.66 6.49 -115.06 -0.75 -6.41 16 17 C 0.09 0.66 5.24 -4.97 -0.03 0.64 16 18 C -0.05 -0.39 5.42 -104.61 -0.57 -0.96 16 19 C -0.12 -0.79 9.61 -39.44 -0.38 -1.17 16 20 C 0.11 0.74 6.70 -39.22 -0.26 0.47 16 21 O -0.50 -2.83 13.50 -19.50 -0.26 -3.09 16 22 C -0.13 -0.79 9.99 -39.44 -0.39 -1.19 16 23 C -0.09 -0.57 9.82 -39.57 -0.39 -0.96 16 24 C -0.04 -0.31 6.23 -39.49 -0.25 -0.56 16 25 Cl -0.06 -0.48 26.38 -51.86 -1.37 -1.85 16 26 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 27 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 28 H 0.09 1.67 8.14 -51.92 -0.42 1.24 16 29 H 0.40 3.95 8.47 -40.82 -0.35 3.61 16 30 H 0.08 1.01 8.14 -51.92 -0.42 0.58 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.35 3.04 7.30 -39.29 -0.29 2.75 16 35 H 0.09 0.54 7.95 -51.93 -0.41 0.12 16 36 H 0.05 0.35 7.58 -51.93 -0.39 -0.04 16 37 H 0.14 0.80 8.00 -52.49 -0.42 0.38 16 38 H 0.40 0.47 9.06 45.56 0.41 0.89 16 39 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 40 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 375.66 15.07 5.66 5.66 Total: -1.00 -36.06 375.66 -9.81 -45.87 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -4.37 Total: 2.54 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -1.98 Total: -7.90 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.35 Total: -41.97 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.18 Total: -14.89 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.37 Total: -1.85 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.06 -9.81 -45.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799201.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.927 kcal (2) G-P(sol) polarization free energy of solvation -36.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds