Wall clock time and date at job start Wed Apr 1 2020 02:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47413 * 2 1 4 4 C 1.46501 * 119.99615 * 275.00326 * 3 2 1 5 5 C 1.53003 * 109.46833 * 274.99477 * 4 3 2 6 6 S 1.65591 * 120.00198 * 94.99556 * 3 2 1 7 7 O 1.42096 * 106.40562 * 336.46478 * 6 3 2 8 8 O 1.42103 * 106.40484 * 203.54193 * 6 3 2 9 9 C 1.76200 * 107.21838 * 90.00344 * 6 3 2 10 10 C 1.38327 * 119.93002 * 269.97986 * 9 6 3 11 11 C 1.38078 * 120.07431 * 179.69429 * 10 9 6 12 12 C 1.38925 * 119.92315 * 0.62184 * 11 10 9 13 13 O 1.35725 * 120.07161 * 179.67367 * 12 11 10 14 14 C 1.22315 * 116.99769 * 354.26500 * 13 12 11 15 15 H 1.08005 * 119.99961 * 5.07462 * 14 13 12 16 16 C 1.46629 * 119.99857 * 185.07663 * 14 13 12 17 17 N 1.29374 * 119.99741 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00260 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47204 * 89.99651 * 18 16 14 20 20 H 1.48499 * 109.47292 * 209.99847 * 18 16 14 21 21 H 1.48504 * 109.46821 * 330.00119 * 18 16 14 22 22 C 1.38891 * 119.85918 * 359.40105 * 12 11 10 23 23 N 1.48014 * 120.03470 * 180.25531 * 22 12 11 24 24 O 1.31708 * 119.99818 * 180.02562 * 23 22 12 25 25 O 1.31698 * 120.00300 * 359.97438 * 23 22 12 26 26 C 1.38111 * 119.92848 * 0.27498 * 22 12 11 27 27 H 1.09004 * 109.46640 * 300.00457 * 1 2 3 28 28 H 1.09004 * 109.47059 * 60.00006 * 1 2 3 29 29 H 1.09001 * 109.47088 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47275 * 239.99417 * 2 1 3 31 31 H 1.09004 * 109.47059 * 119.99994 * 2 1 3 32 32 H 1.09000 * 109.47635 * 34.99384 * 4 3 2 33 33 H 1.09000 * 109.46996 * 155.00049 * 4 3 2 34 34 H 1.09001 * 109.47017 * 180.02562 * 5 4 3 35 35 H 1.08994 * 109.47336 * 300.00403 * 5 4 3 36 36 H 1.09000 * 109.46862 * 60.00490 * 5 4 3 37 37 H 1.07999 * 119.96445 * 359.97438 * 10 9 6 38 38 H 1.08002 * 120.03625 * 180.32185 * 11 10 9 39 39 H 0.96994 * 119.99465 * 180.02562 * 17 16 14 40 40 H 1.07996 * 119.96405 * 179.97438 * 26 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.5152 1.7838 -1.8918 6 16 2.4122 2.1202 1.4286 7 8 1.6869 1.4416 2.4447 8 8 2.3057 3.5187 1.1997 9 6 4.1170 1.7941 1.7319 10 6 4.4879 0.6704 2.4483 11 6 5.8232 0.4086 2.6823 12 6 6.7941 1.2821 2.2086 13 8 8.1073 1.0312 2.4426 14 6 8.3706 0.0813 3.1668 15 1 7.5796 -0.5632 3.5211 16 6 9.7601 -0.1825 3.5538 17 7 10.0385 -1.1870 4.3201 18 14 11.1280 0.9326 2.9416 19 1 11.3310 2.0427 3.9068 20 1 12.3842 0.1510 2.8147 21 1 10.7560 1.4905 1.6166 22 6 6.4184 2.4098 1.4901 23 7 7.4498 3.3401 0.9787 24 8 7.0927 4.4095 0.2978 25 8 8.7246 3.0991 1.2053 26 6 5.0813 2.6623 1.2536 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.3618 1.8097 -1.9454 33 1 2.0922 3.1802 -1.0757 34 1 3.6195 2.3254 -2.8320 35 1 4.3117 2.0827 -1.2104 36 1 3.5812 0.7122 -2.0801 37 1 3.7324 -0.0054 2.8211 38 1 6.1124 -0.4717 3.2372 39 1 10.9576 -1.3612 4.5764 40 1 4.7885 3.5392 0.6954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007427651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:32 Heat of formation + Delta-G solvation = -30.367325 kcal Electronic energy + Delta-G solvation = -29017.335475 eV Core-core repulsion = 24737.853926 eV Total energy + Delta-G solvation = -4279.481549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.60033 -38.29607 -37.12461 -37.01648 -36.76237 -35.53645 -34.21237 -32.95513 -31.97825 -30.95267 -30.24048 -28.77892 -26.62823 -25.41839 -23.74710 -22.47464 -22.19351 -21.89559 -19.52389 -18.82153 -18.52000 -17.72024 -17.20626 -16.82260 -16.23330 -15.78524 -15.76965 -15.61707 -15.10000 -14.62294 -14.46849 -14.19979 -14.06625 -13.86353 -13.55935 -13.47733 -13.02810 -12.94521 -12.73570 -12.18196 -12.09764 -11.88927 -11.84403 -11.77648 -11.68812 -11.58389 -11.53530 -11.01841 -10.88289 -10.77178 -10.70693 -10.36420 -10.05704 -9.93689 -9.70926 -9.48959 -9.08899 -8.87284 -8.52504 -8.02930 -4.75185 0.40750 0.70243 1.31579 2.15892 2.51184 2.62857 2.67178 2.84259 3.13200 3.51205 3.52885 3.65447 3.99126 4.14713 4.57179 4.70608 5.05146 5.11321 5.15603 5.30308 5.31927 5.35378 5.38149 5.52983 5.57026 5.65699 5.78565 5.83384 5.88398 5.99930 6.07352 6.12819 6.20313 6.26611 6.27106 6.31216 6.61582 6.66598 6.70140 6.96804 7.05838 7.37755 8.19660 8.49826 8.86314 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.016388 B = 0.003770 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.153720 B = 7425.899331 C = 8264.110868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.122 3.878 3 N -1.001 6.001 4 C 0.113 3.887 5 C -0.178 4.178 6 S 2.701 3.299 7 O -0.965 6.965 8 O -0.968 6.968 9 C -0.778 4.778 10 C 0.004 3.996 11 C -0.195 4.195 12 C 0.043 3.957 13 O -0.024 6.024 14 C -0.287 4.287 15 H 0.128 0.872 16 C 0.068 3.932 17 N -0.722 5.722 18 Si 0.912 3.088 19 H -0.249 1.249 20 H -0.264 1.264 21 H -0.214 1.214 22 C -0.082 4.082 23 N 0.029 4.971 24 O -0.312 6.312 25 O -0.262 6.262 26 C 0.114 3.886 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.131 0.869 38 H 0.141 0.859 39 H 0.321 0.679 40 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.420 -4.777 -5.186 11.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.003 4.003 3 N -0.837 5.837 4 C -0.013 4.013 5 C -0.237 4.237 6 S 2.796 3.204 7 O -0.956 6.956 8 O -0.958 6.958 9 C -0.872 4.872 10 C -0.016 4.016 11 C -0.215 4.215 12 C -0.021 4.021 13 O 0.096 5.904 14 C -0.369 4.369 15 H 0.145 0.855 16 C -0.162 4.162 17 N -0.344 5.344 18 Si 0.729 3.271 19 H -0.173 1.173 20 H -0.188 1.188 21 H -0.136 1.136 22 C -0.182 4.182 23 N 0.454 4.546 24 O -0.464 6.464 25 O -0.426 6.426 26 C 0.092 3.908 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.135 0.865 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -9.833 -4.487 -4.566 11.733 hybrid contribution 1.613 -0.149 -0.224 1.635 sum -8.220 -4.635 -4.790 10.583 Atomic orbital electron populations 1.22223 0.96093 1.02252 1.02607 1.21178 0.94305 0.81589 1.03271 1.57719 1.80003 1.23667 1.22352 1.21336 0.97801 0.97231 0.84895 1.22279 0.97686 1.02276 1.01456 1.01414 0.73829 0.73002 0.72203 1.93524 1.70776 1.75652 1.55635 1.93532 1.86997 1.30084 1.85234 1.29812 1.22543 1.10011 1.24833 1.20172 0.95400 0.93472 0.92565 1.20643 0.92038 1.01477 1.07327 1.18020 0.80379 0.96639 1.07092 1.80115 1.24901 1.39754 1.45677 1.21841 0.96330 1.02041 1.16734 0.85510 1.27063 0.98411 0.96896 0.93864 1.68507 1.25627 1.21555 1.18739 0.85945 0.76766 0.79609 0.84732 1.17269 1.18798 1.13576 1.18843 0.86830 0.94795 1.17772 1.49739 1.02992 1.01636 1.00216 1.96127 1.87926 1.17457 1.44916 1.96182 0.96351 1.82693 1.67418 1.20185 0.88944 0.94363 0.87277 0.91830 0.92446 0.91603 0.90525 0.89998 0.90275 0.88916 0.91419 0.92124 0.92185 0.85152 0.84134 0.86528 0.83415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 10.24 37.16 0.38 -1.19 16 2 C 0.12 1.23 6.07 -4.04 -0.02 1.21 16 3 N -1.00 -12.32 2.78 -114.37 -0.32 -12.64 16 4 C 0.11 1.22 6.40 -4.04 -0.03 1.20 16 5 C -0.18 -2.01 10.24 37.16 0.38 -1.63 16 6 S 2.70 43.06 5.64 -107.50 -0.61 42.45 16 7 O -0.97 -16.62 16.25 -57.17 -0.93 -17.55 16 8 O -0.97 -17.66 15.83 -57.17 -0.90 -18.56 16 9 C -0.78 -13.84 5.98 -39.53 -0.24 -14.08 16 10 C 0.00 0.08 9.51 -39.61 -0.38 -0.30 16 11 C -0.19 -3.69 9.12 -39.39 -0.36 -4.04 16 12 C 0.04 0.95 6.57 -39.09 -0.26 0.69 16 13 O -0.02 -0.56 6.16 -1.14 -0.01 -0.57 16 14 C -0.29 -6.12 9.98 34.12 0.34 -5.78 16 15 H 0.13 2.58 5.14 -52.48 -0.27 2.31 16 16 C 0.07 1.36 5.69 -15.20 -0.09 1.27 16 17 N -0.72 -14.03 13.88 55.99 0.78 -13.25 16 18 Si 0.91 16.77 28.83 -169.99 -4.90 11.87 16 19 H -0.25 -4.65 7.11 56.52 0.40 -4.25 16 20 H -0.26 -4.38 7.11 56.52 0.40 -3.98 16 21 H -0.21 -4.43 6.70 56.52 0.38 -4.05 16 22 C -0.08 -1.87 6.90 -79.75 -0.55 -2.42 16 23 N 0.03 0.75 4.98 34.06 0.17 0.92 16 24 O -0.31 -8.01 19.15 -31.57 -0.60 -8.61 16 25 O -0.26 -6.98 17.49 -39.21 -0.69 -7.67 16 26 C 0.11 2.28 7.95 -39.61 -0.31 1.96 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 31 H 0.08 0.83 7.61 -51.93 -0.40 0.43 16 32 H 0.08 0.66 8.11 -51.93 -0.42 0.23 16 33 H 0.09 1.07 6.91 -51.93 -0.36 0.71 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.83 7.00 -51.93 -0.36 0.47 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.13 1.89 7.61 -52.49 -0.40 1.49 16 38 H 0.14 2.42 5.69 -52.49 -0.30 2.12 16 39 H 0.32 5.38 8.26 -40.82 -0.34 5.04 16 40 H 0.15 2.85 7.13 -52.49 -0.37 2.48 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -29.00 358.86 -8.31 -37.30 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.57 Total: 4.01 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: -1.13 Total: -23.11 kcal Atomic # 7 Polarization: -25.60 SS G_CDS: 0.63 Total: -24.97 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -3.13 Total: -52.97 kcal Atomic # 14 Polarization: 16.77 SS G_CDS: -4.90 Total: 11.87 kcal Atomic # 16 Polarization: 43.06 SS G_CDS: -0.61 Total: 42.45 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.00 -8.31 -37.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007427651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.934 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds