Wall clock time and date at job start Wed Apr 1 2020 02:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.47413 * 2 1 4 4 C 1.46501 * 119.99615 * 275.00326 * 3 2 1 5 5 C 1.53003 * 109.46833 * 274.99477 * 4 3 2 6 6 S 1.65591 * 120.00198 * 94.99556 * 3 2 1 7 7 O 1.42096 * 106.40562 * 336.46478 * 6 3 2 8 8 O 1.42103 * 106.40484 * 203.54193 * 6 3 2 9 9 C 1.76200 * 107.21838 * 90.00344 * 6 3 2 10 10 C 1.38327 * 119.93002 * 269.97986 * 9 6 3 11 11 C 1.38078 * 120.07431 * 179.69429 * 10 9 6 12 12 C 1.38925 * 119.92315 * 0.62184 * 11 10 9 13 13 O 1.35725 * 120.07161 * 179.67367 * 12 11 10 14 14 C 1.22315 * 116.99769 * 354.26500 * 13 12 11 15 15 H 1.08005 * 119.99961 * 5.07462 * 14 13 12 16 16 C 1.46629 * 119.99857 * 185.07663 * 14 13 12 17 17 N 1.29374 * 119.99741 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00260 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47204 * 89.99651 * 18 16 14 20 20 H 1.48499 * 109.47292 * 209.99847 * 18 16 14 21 21 H 1.48504 * 109.46821 * 330.00119 * 18 16 14 22 22 C 1.38891 * 119.85918 * 359.40105 * 12 11 10 23 23 N 1.48014 * 120.03470 * 180.25531 * 22 12 11 24 24 O 1.31708 * 119.99818 * 180.02562 * 23 22 12 25 25 O 1.31698 * 120.00300 * 359.97438 * 23 22 12 26 26 C 1.38111 * 119.92848 * 0.27498 * 22 12 11 27 27 H 1.09004 * 109.46640 * 300.00457 * 1 2 3 28 28 H 1.09004 * 109.47059 * 60.00006 * 1 2 3 29 29 H 1.09001 * 109.47088 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47275 * 239.99417 * 2 1 3 31 31 H 1.09004 * 109.47059 * 119.99994 * 2 1 3 32 32 H 1.09000 * 109.47635 * 34.99384 * 4 3 2 33 33 H 1.09000 * 109.46996 * 155.00049 * 4 3 2 34 34 H 1.09001 * 109.47017 * 180.02562 * 5 4 3 35 35 H 1.08994 * 109.47336 * 300.00403 * 5 4 3 36 36 H 1.09000 * 109.46862 * 60.00490 * 5 4 3 37 37 H 1.07999 * 119.96445 * 359.97438 * 10 9 6 38 38 H 1.08002 * 120.03625 * 180.32185 * 11 10 9 39 39 H 0.96994 * 119.99465 * 180.02562 * 17 16 14 40 40 H 1.07996 * 119.96405 * 179.97438 * 26 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.5152 1.7838 -1.8918 6 16 2.4122 2.1202 1.4286 7 8 1.6869 1.4416 2.4447 8 8 2.3057 3.5187 1.1997 9 6 4.1170 1.7941 1.7319 10 6 4.4879 0.6704 2.4483 11 6 5.8232 0.4086 2.6823 12 6 6.7941 1.2821 2.2086 13 8 8.1073 1.0312 2.4426 14 6 8.3706 0.0813 3.1668 15 1 7.5796 -0.5632 3.5211 16 6 9.7601 -0.1825 3.5538 17 7 10.0385 -1.1870 4.3201 18 14 11.1280 0.9326 2.9416 19 1 11.3310 2.0427 3.9068 20 1 12.3842 0.1510 2.8147 21 1 10.7560 1.4905 1.6166 22 6 6.4184 2.4098 1.4901 23 7 7.4498 3.3401 0.9787 24 8 7.0927 4.4095 0.2978 25 8 8.7246 3.0991 1.2053 26 6 5.0813 2.6623 1.2536 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.3618 1.8097 -1.9454 33 1 2.0922 3.1802 -1.0757 34 1 3.6195 2.3254 -2.8320 35 1 4.3117 2.0827 -1.2104 36 1 3.5812 0.7122 -2.0801 37 1 3.7324 -0.0054 2.8211 38 1 6.1124 -0.4717 3.2372 39 1 10.9576 -1.3612 4.5764 40 1 4.7885 3.5392 0.6954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007427651.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:31 Heat of formation + Delta-G solvation = -48.640403 kcal Electronic energy + Delta-G solvation = -29018.127855 eV Core-core repulsion = 24737.853926 eV Total energy + Delta-G solvation = -4280.273929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.53544 -39.83820 -38.38488 -38.20579 -38.02895 -36.91361 -36.07049 -34.43419 -32.80238 -32.42917 -31.83736 -29.67135 -28.41400 -26.97642 -24.58512 -24.03936 -23.70180 -22.96627 -21.25583 -20.36091 -19.89298 -19.00423 -18.49421 -18.32864 -17.65317 -17.45177 -17.16600 -17.15841 -16.78882 -16.01829 -15.91480 -15.69719 -15.12596 -15.02069 -14.78911 -14.59378 -14.38262 -14.16600 -13.85268 -13.63492 -13.35144 -13.19519 -13.13841 -13.07666 -12.94273 -12.65220 -12.58681 -12.44946 -12.27673 -11.91917 -11.84187 -11.70842 -11.56917 -11.49735 -11.27815 -11.22934 -10.38029 -10.20093 -9.99321 -9.83952 -6.44449 -1.42234 -0.60064 -0.19093 0.58829 1.04955 1.08868 1.10482 1.25857 1.78805 1.82564 2.04959 2.11526 2.45624 2.76403 3.29391 3.61879 3.80833 3.91689 4.00766 4.14596 4.26875 4.30444 4.36370 4.47454 4.52001 4.53474 4.58991 4.69197 4.73400 4.76206 4.90146 4.98585 5.08032 5.10456 5.14121 5.25417 5.35666 5.37477 5.48297 5.57251 5.75500 5.88047 6.65532 6.72449 7.07160 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.016388 B = 0.003770 C = 0.003387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.153720 B = 7425.899331 C = 8264.110868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.110 3.890 3 N -0.990 5.990 4 C 0.109 3.891 5 C -0.179 4.179 6 S 2.717 3.283 7 O -0.969 6.969 8 O -0.993 6.993 9 C -0.734 4.734 10 C -0.025 4.025 11 C -0.163 4.163 12 C -0.030 4.030 13 O -0.029 6.029 14 C -0.204 4.204 15 H 0.157 0.843 16 C 0.048 3.952 17 N -0.670 5.670 18 Si 0.942 3.058 19 H -0.256 1.256 20 H -0.215 1.215 21 H -0.263 1.263 22 C -0.068 4.068 23 N 0.023 4.977 24 O -0.436 6.436 25 O -0.384 6.384 26 C 0.088 3.912 27 H 0.044 0.956 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.026 0.974 36 H 0.074 0.926 37 H 0.170 0.830 38 H 0.169 0.831 39 H 0.348 0.652 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.359 -11.079 -2.656 15.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.014 4.014 3 N -0.830 5.830 4 C -0.015 4.015 5 C -0.238 4.238 6 S 2.808 3.192 7 O -0.960 6.960 8 O -0.984 6.984 9 C -0.825 4.825 10 C -0.045 4.045 11 C -0.182 4.182 12 C -0.091 4.091 13 O 0.094 5.906 14 C -0.293 4.293 15 H 0.174 0.826 16 C -0.187 4.187 17 N -0.295 5.295 18 Si 0.759 3.241 19 H -0.180 1.180 20 H -0.137 1.137 21 H -0.188 1.188 22 C -0.178 4.178 23 N 0.396 4.604 24 O -0.555 6.555 25 O -0.514 6.514 26 C 0.067 3.933 27 H 0.063 0.937 28 H 0.086 0.914 29 H 0.105 0.895 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.136 0.864 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.045 0.955 36 H 0.093 0.907 37 H 0.187 0.813 38 H 0.186 0.814 39 H 0.165 0.835 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.565 -10.499 -2.197 15.056 hybrid contribution 1.954 0.691 -0.340 2.100 sum -8.611 -9.808 -2.537 13.296 Atomic orbital electron populations 1.22235 0.95120 1.03558 1.02224 1.21555 0.95155 0.79911 1.04802 1.57481 1.79136 1.24977 1.21364 1.21525 0.98702 0.96643 0.84644 1.22300 0.96868 1.03321 1.01343 1.01048 0.72781 0.72471 0.72928 1.93512 1.70080 1.75585 1.56784 1.93510 1.86844 1.32237 1.85797 1.30501 1.23479 1.08150 1.20387 1.20517 0.95718 0.94259 0.94018 1.20914 0.91860 1.00545 1.04914 1.18289 0.79730 0.98988 1.12126 1.80208 1.27140 1.39196 1.44051 1.23102 0.98031 0.98706 1.09431 0.82623 1.27378 0.98399 0.98025 0.94932 1.68404 1.28389 1.18772 1.13958 0.85559 0.77637 0.79053 0.81811 1.17996 1.13720 1.18755 1.19296 0.87424 0.94641 1.16488 1.49477 1.02501 1.03270 1.05105 1.95994 1.87912 1.20750 1.50863 1.96024 0.98080 1.84663 1.72593 1.20245 0.88755 0.95311 0.88998 0.93719 0.91388 0.89456 0.87876 0.89656 0.86405 0.90164 0.90178 0.95468 0.90711 0.81291 0.81366 0.83455 0.84363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.52 10.24 71.98 0.74 -1.79 16 2 C 0.11 1.82 6.07 86.38 0.52 2.34 16 3 N -0.99 -22.52 2.78 -515.77 -1.44 -23.96 16 4 C 0.11 2.24 6.40 86.38 0.55 2.79 16 5 C -0.18 -4.05 10.24 71.98 0.74 -3.31 16 6 S 2.72 84.54 5.64 -56.49 -0.32 84.22 16 7 O -0.97 -31.18 16.25 -128.00 -2.08 -33.26 16 8 O -0.99 -37.23 15.83 -128.00 -2.03 -39.26 16 9 C -0.73 -26.10 5.98 22.30 0.13 -25.97 16 10 C -0.02 -0.79 9.51 22.25 0.21 -0.58 16 11 C -0.16 -5.67 9.12 22.40 0.20 -5.47 16 12 C -0.03 -1.33 6.57 22.59 0.15 -1.18 16 13 O -0.03 -1.33 6.16 73.29 0.45 -0.88 16 14 C -0.20 -7.75 9.98 70.01 0.70 -7.05 16 15 H 0.16 5.16 5.14 -2.91 -0.01 5.14 16 16 C 0.05 1.65 5.69 87.25 0.50 2.15 16 17 N -0.67 -20.76 13.88 23.22 0.32 -20.44 16 18 Si 0.94 32.16 28.83 68.60 1.98 34.14 16 19 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 20 H -0.22 -5.84 7.11 99.48 0.71 -5.13 16 21 H -0.26 -11.54 6.70 99.48 0.67 -10.88 16 22 C -0.07 -3.40 6.90 36.50 0.25 -3.15 16 23 N 0.02 1.40 4.98 -46.16 -0.23 1.17 16 24 O -0.44 -27.19 19.15 3.50 0.07 -27.12 16 25 O -0.38 -23.82 17.49 10.83 0.19 -23.63 16 26 C 0.09 3.84 7.95 22.25 0.18 4.01 16 27 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 1.22 8.11 -2.39 -0.02 1.20 16 31 H 0.09 1.38 7.61 -2.38 -0.02 1.36 16 32 H 0.12 1.57 8.11 -2.39 -0.02 1.55 16 33 H 0.08 1.88 6.91 -2.39 -0.02 1.86 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.03 0.79 7.00 -2.39 -0.02 0.78 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.17 4.09 7.61 -2.91 -0.02 4.06 16 38 H 0.17 4.72 5.69 -2.91 -0.02 4.70 16 39 H 0.35 8.74 8.26 -92.71 -0.77 7.98 16 40 H 0.14 6.19 7.13 -2.91 -0.02 6.17 16 Total: -1.00 -73.15 358.86 2.84 -70.31 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 1.05 Total: 15.89 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 4.87 Total: -37.19 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -1.34 Total: -43.23 kcal Atomic # 8 Polarization: -120.75 SS G_CDS: -3.40 Total: -124.14 kcal Atomic # 14 Polarization: 32.16 SS G_CDS: 1.98 Total: 34.14 kcal Atomic # 16 Polarization: 84.54 SS G_CDS: -0.32 Total: 84.22 kcal Total: -73.15 2.84 -70.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007427651.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.669 kcal (2) G-P(sol) polarization free energy of solvation -73.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds