Wall clock time and date at job start Wed Apr 1 2020 02:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.47498 * 2 1 4 4 C 1.46503 * 120.00072 * 275.00079 * 3 2 1 5 5 C 1.50703 * 109.46892 * 275.21308 * 4 3 2 6 6 H 1.08005 * 119.99911 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99998 * 179.97438 * 5 4 3 8 8 N 1.31515 * 120.00282 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99849 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47288 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47233 * 120.00123 * 9 7 5 12 12 H 1.48504 * 109.47214 * 240.00039 * 9 7 5 13 13 S 1.65604 * 120.00451 * 94.99520 * 3 2 1 14 14 O 1.42094 * 106.40355 * 153.26780 * 13 3 2 15 15 O 1.42102 * 106.39737 * 20.35134 * 13 3 2 16 16 C 1.76200 * 107.21698 * 266.81268 * 13 3 2 17 17 C 1.38286 * 119.94565 * 347.27329 * 16 13 3 18 18 C 1.38122 * 120.05335 * 180.27897 * 17 16 13 19 19 C 1.38758 * 119.94599 * 359.49132 * 18 17 16 20 20 O 1.35902 * 120.05506 * 180.25648 * 19 18 17 21 21 C 1.42898 * 116.99899 * 0.25191 * 20 19 18 22 22 C 1.38709 * 119.88521 * 0.50712 * 19 18 17 23 23 C 1.38163 * 119.94738 * 359.74846 * 22 19 18 24 24 N 1.48002 * 119.97404 * 180.02562 * 23 22 19 25 25 O 1.21801 * 119.99970 * 6.72505 * 24 23 22 26 26 O 1.21801 * 119.99820 * 186.71991 * 24 23 22 27 27 H 1.08991 * 109.47504 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47395 * 300.00694 * 1 2 3 29 29 H 1.09007 * 109.46744 * 59.99907 * 1 2 3 30 30 H 1.08998 * 109.47395 * 239.99306 * 2 1 3 31 31 H 1.09011 * 109.46877 * 119.99604 * 2 1 3 32 32 H 1.08996 * 109.47075 * 35.20605 * 4 3 2 33 33 H 1.08996 * 109.47486 * 155.21368 * 4 3 2 34 34 H 0.96999 * 120.00089 * 180.02562 * 8 7 5 35 35 H 1.08001 * 119.97076 * 0.02562 * 17 16 13 36 36 H 1.08000 * 120.02608 * 179.73999 * 18 17 16 37 37 H 1.09004 * 109.46995 * 180.02562 * 21 20 19 38 38 H 1.08996 * 109.47259 * 299.99647 * 21 20 19 39 39 H 1.09001 * 109.47362 * 60.00274 * 21 20 19 40 40 H 1.08001 * 120.02465 * 179.76451 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4927 1.7846 -1.8849 6 1 4.1690 1.1050 -1.3876 7 6 3.8501 2.3556 -3.0879 8 7 3.0268 3.1834 -3.6933 9 14 5.5044 1.9544 -3.8572 10 1 6.2397 1.0055 -2.9832 11 1 5.2933 1.3374 -5.1914 12 1 6.2956 3.2020 -4.0085 13 16 2.4122 2.1203 1.4287 14 8 3.3850 3.1073 1.1150 15 8 2.6363 1.0798 2.3702 16 6 0.9811 2.9889 1.9783 17 6 -0.0856 3.1758 1.1184 18 6 -1.2062 3.8614 1.5451 19 6 -1.2653 4.3537 2.8411 20 8 -2.3689 5.0240 3.2649 21 6 -3.4336 5.1808 2.3247 22 6 -0.1940 4.1648 3.7016 23 6 0.9269 3.4830 3.2684 24 7 2.0701 3.2807 4.1863 25 8 1.9764 3.6054 5.3565 26 8 3.1046 2.7894 3.7715 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.3597 1.8125 -1.9439 33 1 2.0961 3.1803 -1.0752 34 1 3.2781 3.5848 -4.5398 35 1 -0.0408 2.7889 0.1111 36 1 -2.0373 4.0107 0.8718 37 1 -4.2506 5.7325 2.7897 38 1 -3.0728 5.7306 1.4555 39 1 -3.7894 4.1992 2.0117 40 1 -0.2360 4.5503 4.7096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042454379.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:06 Heat of formation + Delta-G solvation = -69.058871 kcal Electronic energy + Delta-G solvation = -29512.974229 eV Core-core repulsion = 25231.814889 eV Total energy + Delta-G solvation = -4281.159340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.38573 -40.73749 -38.08388 -36.83710 -36.58142 -36.22116 -35.12480 -32.76065 -32.32377 -31.30414 -30.13451 -28.13721 -26.73103 -26.60629 -23.72367 -23.27938 -22.75276 -21.64914 -20.06811 -18.86120 -18.57533 -17.72103 -17.53723 -17.50315 -17.11661 -16.40709 -16.36172 -16.25538 -15.67183 -14.79644 -14.55469 -14.51101 -13.95458 -13.79873 -13.49168 -13.43242 -13.13646 -13.00843 -12.21941 -12.19037 -11.93310 -11.90401 -11.82247 -11.58970 -11.48099 -11.38594 -11.27513 -11.13515 -10.97931 -10.91068 -10.79217 -10.53923 -10.46714 -10.03225 -9.97524 -9.81269 -9.21433 -8.50654 -8.25191 -6.13088 -4.16278 -0.51774 0.42090 0.78150 1.08660 1.12982 2.54834 2.77771 3.29661 3.38129 3.41264 3.46447 3.94878 4.08183 4.28520 4.36572 4.41922 4.56631 4.61083 4.62797 4.85722 4.96951 5.10825 5.13061 5.24130 5.29126 5.35767 5.45071 5.56418 5.58845 5.67828 5.85320 6.14933 6.20650 6.42077 6.51485 6.54545 7.03108 7.23822 7.44405 7.48126 7.85629 8.11346 8.86859 9.49773 10.95914 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.012797 B = 0.004341 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.517042 B = 6448.157481 C = 7342.642962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.113 3.887 3 N -0.984 5.984 4 C 0.249 3.751 5 C -0.526 4.526 6 H 0.065 0.935 7 C 0.063 3.937 8 N -0.898 5.898 9 Si 0.897 3.103 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.282 1.282 13 S 2.689 3.311 14 O -0.919 6.919 15 O -0.950 6.950 16 C -0.656 4.656 17 C 0.017 3.983 18 C -0.179 4.179 19 C 0.171 3.829 20 O -0.303 6.303 21 C 0.020 3.980 22 C -0.104 4.104 23 C 0.080 3.920 24 N 0.014 4.986 25 O -0.127 6.127 26 O -0.138 6.138 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.167 0.833 36 H 0.156 0.844 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.178 1.119 9.559 18.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.014 4.014 3 N -0.826 5.826 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.083 0.917 7 C -0.139 4.139 8 N -0.537 5.537 9 Si 0.725 3.275 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.208 1.208 13 S 2.770 3.230 14 O -0.908 6.908 15 O -0.940 6.940 16 C -0.735 4.735 17 C -0.002 4.002 18 C -0.198 4.198 19 C 0.124 3.876 20 O -0.216 6.216 21 C -0.075 4.075 22 C -0.124 4.124 23 C -0.003 4.003 24 N 0.535 4.465 25 O -0.349 6.349 26 O -0.351 6.351 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.184 0.816 36 H 0.173 0.827 37 H 0.128 0.872 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -16.066 1.435 9.557 18.749 hybrid contribution 0.164 0.196 -0.592 0.644 sum -15.902 1.631 8.965 18.328 Atomic orbital electron populations 1.22341 0.97482 1.02156 1.01608 1.21264 0.92904 0.82832 1.04356 1.57706 1.80953 1.21342 1.22555 1.19213 0.98226 0.91071 0.78735 1.21494 1.02008 1.27697 1.05366 0.91695 1.24917 0.97466 0.94698 0.96850 1.69909 1.36251 1.30264 1.17289 0.86440 0.83727 0.78494 0.78849 1.19419 1.20980 1.20757 1.02844 0.73298 0.74236 0.72648 1.93631 1.52702 1.60979 1.83531 1.93542 1.82965 1.56082 1.61369 1.31663 1.24516 1.17631 0.99682 1.20981 0.89156 0.91070 0.99030 1.21811 1.01087 1.01411 0.95484 1.18721 0.86766 0.90396 0.91755 1.86125 1.24260 1.69939 1.41231 1.23300 0.88150 1.02518 0.93497 1.20066 0.89905 1.00287 1.02164 1.20053 0.88166 1.02963 0.89139 1.43654 1.02071 0.98930 1.01807 1.94496 1.88574 1.51652 1.00167 1.94619 1.17058 1.43355 1.80098 0.91596 0.93711 0.91717 0.88884 0.89952 0.94152 0.94459 0.92701 0.81564 0.82669 0.87219 0.91629 0.91754 0.81446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.71 37.16 0.36 -1.85 16 2 C 0.11 1.82 6.39 -4.05 -0.03 1.80 16 3 N -0.98 -19.47 1.90 -115.66 -0.22 -19.69 16 4 C 0.25 5.78 4.34 -5.19 -0.02 5.76 16 5 C -0.53 -14.19 9.38 -34.44 -0.32 -14.51 16 6 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.90 -25.11 13.29 55.43 0.74 -24.37 16 9 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 13 S 2.69 56.68 3.93 -107.50 -0.42 56.25 16 14 O -0.92 -23.07 16.51 -64.72 -1.07 -24.14 16 15 O -0.95 -20.83 14.12 -67.11 -0.95 -21.78 16 16 C -0.66 -11.24 5.83 -39.56 -0.23 -11.47 16 17 C 0.02 0.23 8.59 -39.61 -0.34 -0.11 16 18 C -0.18 -1.85 9.04 -39.43 -0.36 -2.21 16 19 C 0.17 1.86 6.69 -39.22 -0.26 1.60 16 20 O -0.30 -2.68 10.50 -19.43 -0.20 -2.89 16 21 C 0.02 0.09 9.81 101.05 0.99 1.09 16 22 C -0.10 -1.34 9.50 -39.44 -0.37 -1.72 16 23 C 0.08 1.33 6.81 -79.98 -0.54 0.78 16 24 N 0.01 0.26 4.45 33.95 0.15 0.41 16 25 O -0.13 -2.16 18.46 -29.46 -0.54 -2.70 16 26 O -0.14 -2.99 13.74 -39.45 -0.54 -3.54 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.52 7.20 -51.93 -0.37 0.15 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.51 8.11 -51.93 -0.42 1.08 16 31 H 0.08 1.30 6.89 -51.92 -0.36 0.94 16 32 H 0.04 0.91 8.11 -51.93 -0.42 0.49 16 33 H 0.04 0.92 7.69 -51.93 -0.40 0.52 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.17 2.12 6.15 -52.49 -0.32 1.80 16 36 H 0.16 1.01 6.30 -52.49 -0.33 0.68 16 37 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 38 H 0.07 0.27 7.65 -51.93 -0.40 -0.13 16 39 H 0.06 0.23 7.67 -51.93 -0.40 -0.17 16 40 H 0.17 1.81 7.62 -52.49 -0.40 1.41 16 LS Contribution 353.24 15.07 5.32 5.32 Total: -1.00 -34.58 353.24 -8.62 -43.19 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: -4.64 Total: -3.21 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -1.22 Total: -19.22 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: 0.67 Total: -43.66 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -3.31 Total: -55.04 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: 56.68 SS G_CDS: -0.42 Total: 56.25 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.58 -8.62 -43.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042454379.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.865 kcal (2) G-P(sol) polarization free energy of solvation -34.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds