Wall clock time and date at job start Wed Apr 1 2020 02:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35903 * 117.00029 * 2 1 4 4 C 1.38755 * 120.05513 * 359.97438 * 3 2 1 5 5 C 1.38117 * 119.94118 * 180.02562 * 4 3 2 6 6 N 1.48010 * 119.96875 * 180.02562 * 5 4 3 7 7 O 1.21798 * 120.00223 * 359.97438 * 6 5 4 8 8 O 1.21803 * 119.99647 * 180.02562 * 6 5 4 9 9 C 1.38289 * 120.05983 * 0.02562 * 5 4 3 10 10 C 1.38243 * 120.11231 * 359.97438 * 9 5 4 11 11 C 1.38166 * 120.05257 * 0.02562 * 10 9 5 12 12 S 1.76198 * 120.02723 * 180.27215 * 11 10 9 13 13 O 1.42104 * 106.40346 * 228.26568 * 12 11 10 14 14 O 1.42099 * 106.40210 * 1.18762 * 12 11 10 15 15 N 1.65601 * 107.21877 * 114.73034 * 12 11 10 16 16 C 1.46509 * 119.99582 * 270.00232 * 15 12 11 17 17 C 1.46497 * 120.00513 * 90.00072 * 15 12 11 18 18 H 1.09004 * 109.46426 * 359.97438 * 17 15 12 19 19 C 1.52992 * 109.47414 * 119.99872 * 17 15 12 20 20 C 1.50704 * 109.47111 * 240.00390 * 17 15 12 21 21 H 1.08000 * 120.00013 * 359.97438 * 20 17 15 22 22 C 1.37869 * 119.99873 * 179.97438 * 20 17 15 23 23 N 1.31512 * 120.00328 * 359.97438 * 22 20 17 24 24 Si 1.86806 * 119.99978 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47279 * 89.99676 * 24 22 20 26 26 H 1.48503 * 109.47271 * 209.99938 * 24 22 20 27 27 H 1.48500 * 109.46921 * 329.99692 * 24 22 20 28 28 H 1.08999 * 109.47410 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47308 * 300.00268 * 1 2 3 30 30 H 1.08998 * 109.47053 * 60.00034 * 1 2 3 31 31 H 1.07995 * 120.02997 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.94737 * 180.02562 * 9 5 4 33 33 H 1.08001 * 119.97363 * 180.02562 * 10 9 5 34 34 H 1.08996 * 109.47193 * 89.99772 * 16 15 12 35 35 H 1.09000 * 109.46746 * 210.00191 * 16 15 12 36 36 H 1.09005 * 109.46749 * 329.99781 * 16 15 12 37 37 H 1.09002 * 109.47505 * 300.00668 * 19 17 15 38 38 H 1.09009 * 109.46892 * 59.99974 * 19 17 15 39 39 H 1.08993 * 109.47308 * 179.97438 * 19 17 15 40 40 H 0.97002 * 120.00343 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 7 1.1165 4.8472 -0.0011 7 8 -0.0999 4.7853 -0.0011 8 8 1.6711 5.9316 -0.0020 9 6 3.3019 3.6758 -0.0016 10 6 4.0560 2.5171 -0.0011 11 6 3.4311 1.2848 -0.0005 12 16 4.3929 -0.1915 0.0074 13 8 3.8559 -1.0257 -1.0100 14 8 5.7537 0.2163 0.0404 15 7 4.0999 -0.9597 1.4449 16 6 4.9336 -0.6690 2.6140 17 6 3.0071 -1.9299 1.5476 18 1 2.5031 -2.0126 0.5846 19 6 3.5723 -3.2944 1.9469 20 6 2.0225 -1.4690 2.5913 21 1 2.1939 -0.5459 3.1250 22 6 0.9030 -2.2257 2.8648 23 7 0.6939 -3.3496 2.2145 24 14 -0.3171 -1.6548 4.1590 25 1 -1.3531 -0.8033 3.5212 26 1 -0.9637 -2.8360 4.7851 27 1 0.3958 -0.8711 5.1997 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2128 2.3204 -0.0005 32 1 3.7922 4.6380 -0.0016 33 1 5.1344 2.5752 -0.0011 34 1 4.4968 0.1568 3.1755 35 1 4.9880 -1.5524 3.2501 36 1 5.9364 -0.3951 2.2860 37 1 4.2844 -3.6278 1.1920 38 1 4.0761 -3.2112 2.9100 39 1 2.7591 -4.0161 2.0237 40 1 -0.0935 -3.8822 2.4072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103496482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:02 Heat of formation + Delta-G solvation = -69.897917 kcal Electronic energy + Delta-G solvation = -29965.166134 eV Core-core repulsion = 25683.970410 eV Total energy + Delta-G solvation = -4281.195724 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.36413 -40.36132 -37.79821 -36.78193 -36.71791 -36.27667 -35.44734 -32.72759 -32.40083 -30.66163 -29.17314 -27.72007 -26.63107 -25.70090 -25.23804 -22.94526 -22.70679 -20.85246 -19.79139 -18.91045 -18.87356 -17.71575 -17.56921 -17.11616 -16.76221 -16.56086 -16.26312 -15.70552 -15.28037 -14.84980 -14.66046 -14.14705 -13.72735 -13.61832 -13.29440 -13.15751 -12.85936 -12.28752 -12.06743 -11.93389 -11.79653 -11.72484 -11.60611 -11.47930 -11.42318 -11.33114 -11.29153 -11.26562 -11.10454 -10.93407 -10.78153 -10.56035 -10.32761 -10.16993 -10.01546 -9.34660 -8.74219 -8.57631 -8.09491 -6.19256 -4.25819 -0.52887 0.76747 0.84856 1.09084 1.18070 2.89269 3.09380 3.09519 3.21359 3.23426 3.45747 4.00311 4.16235 4.23374 4.36635 4.40341 4.88871 4.94322 5.10178 5.11243 5.20299 5.28119 5.41030 5.46133 5.55386 5.63728 5.91830 5.99380 6.05958 6.22004 6.23795 6.52411 6.75763 6.79547 7.02415 7.06107 7.35665 7.47496 7.53762 7.72293 7.94479 8.16830 8.75477 9.38600 10.85556 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.010661 B = 0.005760 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.808621 B = 4859.705741 C = 6514.196388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.257 6.257 3 C 0.249 3.751 4 C -0.176 4.176 5 C 0.041 3.959 6 N 0.023 4.977 7 O -0.154 6.154 8 O -0.151 6.151 9 C -0.131 4.131 10 C 0.016 3.984 11 C -0.674 4.674 12 S 2.689 3.311 13 O -0.940 6.940 14 O -0.972 6.972 15 N -0.972 5.972 16 C 0.095 3.905 17 C 0.266 3.734 18 H 0.073 0.927 19 C -0.147 4.147 20 C -0.512 4.512 21 H 0.057 0.943 22 C 0.068 3.932 23 N -0.885 5.885 24 Si 0.882 3.118 25 H -0.282 1.282 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.121 0.879 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.044 0.956 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.014 0.986 38 H 0.033 0.967 39 H 0.095 0.905 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 8.351 -3.097 9.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.165 6.165 3 C 0.197 3.803 4 C -0.196 4.196 5 C -0.041 4.041 6 N 0.544 4.456 7 O -0.371 6.371 8 O -0.368 6.368 9 C -0.151 4.151 10 C -0.003 4.003 11 C -0.756 4.756 12 S 2.775 3.225 13 O -0.930 6.930 14 O -0.962 6.962 15 N -0.813 5.813 16 C -0.051 4.051 17 C 0.164 3.836 18 H 0.091 0.909 19 C -0.207 4.207 20 C -0.552 4.552 21 H 0.076 0.924 22 C -0.134 4.134 23 N -0.524 5.524 24 Si 0.710 3.290 25 H -0.208 1.208 26 H -0.210 1.210 27 H -0.200 1.200 28 H 0.139 0.861 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.181 0.819 32 H 0.177 0.823 33 H 0.186 0.814 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.033 0.967 38 H 0.052 0.948 39 H 0.113 0.887 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.983 7.117 -3.768 8.984 hybrid contribution -1.906 1.404 1.244 2.674 sum 2.077 8.521 -2.524 9.126 Atomic orbital electron populations 1.23293 0.76266 1.06263 1.00729 1.86491 1.23231 1.22438 1.84374 1.18187 0.90323 0.85376 0.86388 1.21141 1.02697 0.89879 1.05884 1.21034 0.91706 0.83886 1.07506 1.43692 1.01458 1.02723 0.97702 1.94549 0.95650 1.94008 1.52886 1.94529 1.74223 1.15372 1.52720 1.20953 0.90359 1.01281 1.02486 1.20843 1.01169 0.88645 0.89671 1.31237 1.05034 1.21866 1.17474 1.02256 0.73104 0.72964 0.74225 1.93599 1.79988 1.63953 1.55501 1.93509 1.31750 1.83685 1.87298 1.57395 1.44747 1.53393 1.25796 1.21358 0.92870 1.02044 0.88811 1.18899 0.81833 0.83557 0.99288 0.90923 1.22097 1.00474 1.00289 0.97792 1.21282 1.05648 1.07360 1.20934 0.92432 1.24801 0.97621 0.94931 0.96036 1.69870 1.27900 1.13345 1.41262 0.86769 0.81500 0.78393 0.82340 1.20777 1.21041 1.20028 0.86097 0.91868 0.92744 0.81865 0.82349 0.81399 0.93778 0.90040 0.91688 0.96716 0.94825 0.88668 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.42 16 2 O -0.26 -4.62 6.48 -29.30 -0.19 -4.81 16 3 C 0.25 4.10 6.64 -39.21 -0.26 3.84 16 4 C -0.18 -2.57 8.54 -39.43 -0.34 -2.91 16 5 C 0.04 0.58 6.85 -79.98 -0.55 0.04 16 6 N 0.02 0.34 4.45 33.95 0.15 0.49 16 7 O -0.15 -2.37 18.45 -29.46 -0.54 -2.91 16 8 O -0.15 -2.21 18.45 -29.46 -0.54 -2.75 16 9 C -0.13 -1.63 9.55 -39.56 -0.38 -2.00 16 10 C 0.02 0.21 9.55 -39.61 -0.38 -0.17 16 11 C -0.67 -10.82 5.92 -39.43 -0.23 -11.05 16 12 S 2.69 48.96 5.28 -107.50 -0.57 48.39 16 13 O -0.94 -19.83 15.86 -62.53 -0.99 -20.82 16 14 O -0.97 -17.47 15.57 -57.17 -0.89 -18.36 16 15 N -0.97 -18.51 3.06 -115.85 -0.35 -18.87 16 16 C 0.10 1.54 9.90 59.85 0.59 2.13 16 17 C 0.27 5.88 1.84 -69.09 -0.13 5.75 16 18 H 0.07 1.76 5.71 -51.93 -0.30 1.46 16 19 C -0.15 -3.21 8.95 37.15 0.33 -2.88 16 20 C -0.51 -11.82 7.66 -34.44 -0.26 -12.09 16 21 H 0.06 1.34 7.65 -52.49 -0.40 0.94 16 22 C 0.07 1.62 5.30 -17.82 -0.09 1.53 16 23 N -0.89 -21.87 11.32 55.43 0.63 -21.24 16 24 Si 0.88 18.87 29.54 -169.99 -5.02 13.85 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 28 H 0.12 1.86 8.14 -51.93 -0.42 1.44 16 29 H 0.06 0.89 7.66 -51.93 -0.40 0.49 16 30 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 31 H 0.16 2.12 5.85 -52.49 -0.31 1.82 16 32 H 0.16 1.55 7.61 -52.49 -0.40 1.15 16 33 H 0.17 1.78 7.33 -52.49 -0.38 1.39 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.31 6.43 -51.93 -0.33 0.97 16 36 H 0.06 0.93 7.02 -51.93 -0.36 0.56 16 37 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.03 0.68 6.66 -51.92 -0.35 0.34 16 39 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 40 H 0.26 6.29 8.31 -40.82 -0.34 5.95 16 LS Contribution 348.67 15.07 5.25 5.25 Total: -1.00 -28.11 348.67 -8.12 -36.23 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.35 Total: 1.93 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -0.70 Total: -16.39 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.42 Total: -39.62 kcal Atomic # 8 Polarization: -46.49 SS G_CDS: -3.16 Total: -49.65 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.02 Total: 13.85 kcal Atomic # 16 Polarization: 48.96 SS G_CDS: -0.57 Total: 48.39 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.11 -8.12 -36.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.669 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds