Wall clock time and date at job start Wed Apr 1 2020 02:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35903 * 117.00029 * 2 1 4 4 C 1.38755 * 120.05513 * 359.97438 * 3 2 1 5 5 C 1.38117 * 119.94118 * 180.02562 * 4 3 2 6 6 N 1.48010 * 119.96875 * 180.02562 * 5 4 3 7 7 O 1.21798 * 120.00223 * 359.97438 * 6 5 4 8 8 O 1.21803 * 119.99647 * 180.02562 * 6 5 4 9 9 C 1.38289 * 120.05983 * 0.02562 * 5 4 3 10 10 C 1.38243 * 120.11231 * 359.97438 * 9 5 4 11 11 C 1.38166 * 120.05257 * 0.02562 * 10 9 5 12 12 S 1.76198 * 120.02723 * 180.27215 * 11 10 9 13 13 O 1.42104 * 106.40346 * 228.26568 * 12 11 10 14 14 O 1.42099 * 106.40210 * 1.18762 * 12 11 10 15 15 N 1.65601 * 107.21877 * 114.73034 * 12 11 10 16 16 C 1.46509 * 119.99582 * 270.00232 * 15 12 11 17 17 C 1.46497 * 120.00513 * 90.00072 * 15 12 11 18 18 H 1.09004 * 109.46426 * 359.97438 * 17 15 12 19 19 C 1.52992 * 109.47414 * 119.99872 * 17 15 12 20 20 C 1.50704 * 109.47111 * 240.00390 * 17 15 12 21 21 H 1.08000 * 120.00013 * 359.97438 * 20 17 15 22 22 C 1.37869 * 119.99873 * 179.97438 * 20 17 15 23 23 N 1.31512 * 120.00328 * 359.97438 * 22 20 17 24 24 Si 1.86806 * 119.99978 * 179.97438 * 22 20 17 25 25 H 1.48495 * 109.47279 * 89.99676 * 24 22 20 26 26 H 1.48503 * 109.47271 * 209.99938 * 24 22 20 27 27 H 1.48500 * 109.46921 * 329.99692 * 24 22 20 28 28 H 1.08999 * 109.47410 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47308 * 300.00268 * 1 2 3 30 30 H 1.08998 * 109.47053 * 60.00034 * 1 2 3 31 31 H 1.07995 * 120.02997 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.94737 * 180.02562 * 9 5 4 33 33 H 1.08001 * 119.97363 * 180.02562 * 10 9 5 34 34 H 1.08996 * 109.47193 * 89.99772 * 16 15 12 35 35 H 1.09000 * 109.46746 * 210.00191 * 16 15 12 36 36 H 1.09005 * 109.46749 * 329.99781 * 16 15 12 37 37 H 1.09002 * 109.47505 * 300.00668 * 19 17 15 38 38 H 1.09009 * 109.46892 * 59.99974 * 19 17 15 39 39 H 1.08993 * 109.47308 * 179.97438 * 19 17 15 40 40 H 0.97002 * 120.00343 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3753 -0.0005 5 6 1.9208 3.6047 -0.0011 6 7 1.1165 4.8472 -0.0011 7 8 -0.0999 4.7853 -0.0011 8 8 1.6711 5.9316 -0.0020 9 6 3.3019 3.6758 -0.0016 10 6 4.0560 2.5171 -0.0011 11 6 3.4311 1.2848 -0.0005 12 16 4.3929 -0.1915 0.0074 13 8 3.8559 -1.0257 -1.0100 14 8 5.7537 0.2163 0.0404 15 7 4.0999 -0.9597 1.4449 16 6 4.9336 -0.6690 2.6140 17 6 3.0071 -1.9299 1.5476 18 1 2.5031 -2.0126 0.5846 19 6 3.5723 -3.2944 1.9469 20 6 2.0225 -1.4690 2.5913 21 1 2.1939 -0.5459 3.1250 22 6 0.9030 -2.2257 2.8648 23 7 0.6939 -3.3496 2.2145 24 14 -0.3171 -1.6548 4.1590 25 1 -1.3531 -0.8033 3.5212 26 1 -0.9637 -2.8360 4.7851 27 1 0.3958 -0.8711 5.1997 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2128 2.3204 -0.0005 32 1 3.7922 4.6380 -0.0016 33 1 5.1344 2.5752 -0.0011 34 1 4.4968 0.1568 3.1755 35 1 4.9880 -1.5524 3.2501 36 1 5.9364 -0.3951 2.2860 37 1 4.2844 -3.6278 1.1920 38 1 4.0761 -3.2112 2.9100 39 1 2.7591 -4.0161 2.0237 40 1 -0.0935 -3.8822 2.4072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103496482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:01 Heat of formation + Delta-G solvation = -86.460689 kcal Electronic energy + Delta-G solvation = -29965.884350 eV Core-core repulsion = 25683.970410 eV Total energy + Delta-G solvation = -4281.913940 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.50031 -41.53347 -38.99951 -38.21799 -37.87844 -37.84975 -36.94391 -34.46404 -33.54275 -31.77824 -30.85102 -28.88095 -27.79475 -27.23567 -26.93155 -24.08111 -23.84447 -22.52089 -20.92508 -20.26506 -20.01721 -18.97808 -18.85036 -18.49203 -18.27815 -17.95094 -17.56943 -16.97244 -16.80843 -16.27843 -15.96189 -15.32141 -15.20922 -14.90779 -14.69440 -14.46443 -14.28954 -13.62557 -13.41551 -13.34863 -13.20766 -13.14806 -12.96545 -12.90109 -12.79999 -12.77298 -12.61794 -12.59594 -12.44689 -12.40807 -12.22995 -12.13789 -12.01007 -11.81385 -11.22721 -11.03117 -10.40579 -9.89053 -9.63218 -8.01365 -6.11718 -1.67965 -0.62248 -0.23385 -0.08105 0.04619 1.39100 1.47397 1.51386 1.72914 1.94155 2.08712 2.46513 2.64316 3.02894 3.19478 3.27604 3.35760 3.63994 3.86055 3.94996 4.15640 4.17924 4.23736 4.28731 4.38335 4.55577 4.74308 4.79507 4.85336 4.89425 5.03708 5.08066 5.13349 5.21311 5.26992 5.68274 5.76928 5.89149 5.98207 6.16469 6.31657 6.38042 6.93397 7.54724 9.03081 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.010661 B = 0.005760 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.808621 B = 4859.705741 C = 6514.196388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.286 6.286 3 C 0.232 3.768 4 C -0.177 4.177 5 C 0.035 3.965 6 N 0.023 4.977 7 O -0.178 6.178 8 O -0.134 6.134 9 C -0.114 4.114 10 C 0.025 3.975 11 C -0.684 4.684 12 S 2.701 3.299 13 O -0.977 6.977 14 O -0.971 6.971 15 N -0.982 5.982 16 C 0.089 3.911 17 C 0.274 3.726 18 H 0.048 0.952 19 C -0.143 4.143 20 C -0.505 4.505 21 H 0.055 0.945 22 C 0.036 3.964 23 N -0.909 5.909 24 Si 0.928 3.072 25 H -0.274 1.274 26 H -0.291 1.291 27 H -0.277 1.277 28 H 0.106 0.894 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.174 0.826 32 H 0.193 0.807 33 H 0.197 0.803 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.020 0.980 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 10.732 -2.660 11.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.196 6.196 3 C 0.181 3.819 4 C -0.198 4.198 5 C -0.047 4.047 6 N 0.544 4.456 7 O -0.389 6.389 8 O -0.357 6.357 9 C -0.133 4.133 10 C 0.006 3.994 11 C -0.770 4.770 12 S 2.790 3.210 13 O -0.967 6.967 14 O -0.961 6.961 15 N -0.822 5.822 16 C -0.056 4.056 17 C 0.170 3.830 18 H 0.065 0.935 19 C -0.203 4.203 20 C -0.545 4.545 21 H 0.074 0.926 22 C -0.164 4.164 23 N -0.549 5.549 24 Si 0.755 3.245 25 H -0.199 1.199 26 H -0.217 1.217 27 H -0.202 1.202 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.191 0.809 32 H 0.210 0.790 33 H 0.214 0.786 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.896 9.456 -3.320 11.154 hybrid contribution -2.103 0.793 1.077 2.492 sum 2.793 10.249 -2.244 10.857 Atomic orbital electron populations 1.23393 0.75387 1.05873 1.02372 1.86446 1.24462 1.23715 1.84971 1.18314 0.90630 0.85435 0.87560 1.21179 1.03248 0.89583 1.05753 1.21209 0.92402 0.83442 1.07683 1.43764 1.01440 1.02865 0.97565 1.94566 0.95955 1.94117 1.54252 1.94513 1.74091 1.15513 1.51582 1.21339 0.89508 1.02461 1.00029 1.21218 1.02543 0.87514 0.88153 1.30967 1.04803 1.21860 1.19398 1.01584 0.72970 0.73117 0.73327 1.93554 1.80607 1.65742 1.56833 1.93500 1.31755 1.83737 1.87151 1.57285 1.44377 1.53644 1.26879 1.21557 0.93532 1.02418 0.88114 1.18551 0.82470 0.84277 0.97694 0.93473 1.22008 0.99830 0.99921 0.98551 1.21362 1.05700 1.06869 1.20571 0.92648 1.25273 0.98847 0.95019 0.97306 1.69976 1.28265 1.14241 1.42439 0.86047 0.80164 0.77731 0.80554 1.19929 1.21733 1.20178 0.87552 0.91538 0.89781 0.80878 0.78986 0.78555 0.92720 0.90203 0.89636 0.96120 0.93801 0.90936 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.70 9.81 113.37 1.11 1.81 16 2 O -0.29 -10.40 6.48 -83.03 -0.54 -10.94 16 3 C 0.23 7.43 6.64 22.51 0.15 7.58 16 4 C -0.18 -4.91 8.54 22.36 0.19 -4.72 16 5 C 0.03 0.90 6.85 36.36 0.25 1.15 16 6 N 0.02 0.62 4.45 -46.51 -0.21 0.42 16 7 O -0.18 -5.18 18.45 18.89 0.35 -4.84 16 8 O -0.13 -3.48 18.45 18.88 0.35 -3.14 16 9 C -0.11 -2.38 9.55 22.28 0.21 -2.17 16 10 C 0.03 0.57 9.55 22.25 0.21 0.78 16 11 C -0.68 -20.86 5.92 22.37 0.13 -20.73 16 12 S 2.70 96.19 5.28 -56.49 -0.30 95.89 16 13 O -0.98 -41.83 15.86 -122.88 -1.95 -43.77 16 14 O -0.97 -32.98 15.57 -128.00 -1.99 -34.97 16 15 N -0.98 -36.78 3.06 -520.43 -1.59 -38.37 16 16 C 0.09 2.73 9.90 127.77 1.27 3.99 16 17 C 0.27 12.19 1.84 44.24 0.08 12.28 16 18 H 0.05 2.37 5.71 -2.39 -0.01 2.36 16 19 C -0.14 -6.34 8.95 71.98 0.64 -5.70 16 20 C -0.51 -23.31 7.66 25.60 0.20 -23.11 16 21 H 0.06 2.54 7.65 -2.91 -0.02 2.52 16 22 C 0.04 1.69 5.30 84.65 0.45 2.14 16 23 N -0.91 -45.85 11.32 21.44 0.24 -45.61 16 24 Si 0.93 38.54 29.54 68.60 2.03 40.56 16 25 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 26 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 28 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 29 H 0.07 1.87 7.66 -2.39 -0.02 1.85 16 30 H 0.08 1.91 7.66 -2.39 -0.02 1.90 16 31 H 0.17 4.30 5.85 -2.91 -0.02 4.28 16 32 H 0.19 2.73 7.61 -2.91 -0.02 2.71 16 33 H 0.20 3.30 7.33 -2.91 -0.02 3.28 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 2.45 6.43 -2.39 -0.02 2.44 16 36 H 0.09 2.25 7.02 -2.38 -0.02 2.23 16 37 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.04 1.79 6.66 -2.38 -0.02 1.77 16 39 H 0.07 3.55 6.07 -2.39 -0.01 3.54 16 40 H 0.26 12.75 8.31 -92.71 -0.77 11.98 16 Total: -1.00 -59.89 348.67 2.38 -57.51 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: 1.10 Total: 13.96 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 4.90 Total: -26.70 kcal Atomic # 7 Polarization: -82.01 SS G_CDS: -1.56 Total: -83.57 kcal Atomic # 8 Polarization: -93.87 SS G_CDS: -3.78 Total: -97.65 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.56 kcal Atomic # 16 Polarization: 96.19 SS G_CDS: -0.30 Total: 95.89 kcal Total: -59.89 2.38 -57.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.954 kcal (2) G-P(sol) polarization free energy of solvation -59.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds