Wall clock time and date at job start Wed Apr 1 2020 03:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46992 * 308.86132 * 3 2 1 5 5 C 1.37099 * 120.00150 * 264.81837 * 4 3 2 6 6 H 1.08007 * 120.00112 * 186.24158 * 5 4 3 7 7 C 1.38950 * 120.00045 * 6.24406 * 5 4 3 8 8 N 1.31411 * 119.99764 * 34.02255 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 214.02421 * 7 5 4 10 10 H 1.48505 * 109.47094 * 94.99847 * 9 7 5 11 11 H 1.48506 * 109.46914 * 214.99406 * 9 7 5 12 12 H 1.48495 * 109.47452 * 334.99675 * 9 7 5 13 13 C 1.34782 * 120.00042 * 84.81718 * 4 3 2 14 14 O 1.21295 * 120.00182 * 179.97438 * 13 4 3 15 15 C 1.50696 * 119.99732 * 0.02562 * 13 4 3 16 16 H 1.09000 * 110.86221 * 307.34012 * 15 13 4 17 17 C 1.54893 * 110.86658 * 71.34184 * 15 13 4 18 18 C 1.51685 * 102.47814 * 142.56155 * 17 15 13 19 19 C 1.47648 * 125.86717 * 164.52491 * 18 17 15 20 20 C 1.39634 * 120.15122 * 112.79962 * 19 18 17 21 21 C 1.37926 * 119.84886 * 180.02562 * 20 19 18 22 22 C 1.38378 * 120.15462 * 0.02562 * 21 20 19 23 23 C 1.38339 * 120.29688 * 359.97438 * 22 21 20 24 24 C 1.37979 * 120.14920 * 0.02562 * 23 22 21 25 25 N 1.48016 * 120.07414 * 180.27514 * 24 23 22 26 26 O 1.21808 * 120.00040 * 353.83079 * 25 24 23 27 27 O 1.21797 * 120.00253 * 173.83486 * 25 24 23 28 28 N 1.29081 * 108.27084 * 344.26226 * 18 17 15 29 29 O 1.41390 * 112.86915 * 359.92144 * 28 18 17 30 30 H 1.08997 * 109.47324 * 188.86496 * 3 2 1 31 31 H 1.08993 * 109.47653 * 68.85894 * 3 2 1 32 32 H 0.96997 * 119.99591 * 180.02562 * 8 7 5 33 33 H 1.08999 * 110.91634 * 24.27795 * 17 15 13 34 34 H 1.09003 * 110.73536 * 260.76016 * 17 15 13 35 35 H 1.08001 * 120.07073 * 0.02562 * 20 19 18 36 36 H 1.08001 * 119.92344 * 179.97438 * 21 20 19 37 37 H 1.07994 * 119.85437 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.92591 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.8658 1.0755 5 6 3.4260 -0.3280 2.2929 6 1 3.8804 -0.9477 3.0519 7 6 3.1752 1.0142 2.5503 8 7 2.1194 1.5971 2.0284 9 14 4.3388 1.9899 3.6380 10 1 5.3280 2.7029 2.7903 11 1 3.5638 2.9775 4.4313 12 1 5.0498 1.0653 4.5571 13 6 3.2225 -2.1916 0.8683 14 8 3.6275 -2.9089 1.7586 15 6 2.8610 -2.7826 -0.4700 16 1 1.8553 -2.4850 -0.7669 17 6 3.9023 -2.3882 -1.5467 18 6 3.9999 -3.6484 -2.3853 19 6 4.5983 -3.7475 -3.7315 20 6 5.7720 -4.4787 -3.9252 21 6 6.3259 -4.5667 -5.1853 22 6 5.7215 -3.9320 -6.2562 23 6 4.5586 -3.2060 -6.0713 24 6 3.9938 -3.1097 -4.8161 25 7 2.7462 -2.3375 -4.6213 26 8 2.2779 -1.6940 -5.5434 27 8 2.1877 -2.3454 -3.5389 28 7 3.4750 -4.6205 -1.7177 29 8 2.9899 -4.2188 -0.4518 30 1 2.9709 1.0162 0.1584 31 1 2.9715 -0.3698 -0.9584 32 1 1.9445 2.5342 2.2078 33 1 4.8635 -2.1517 -1.0903 34 1 3.5407 -1.5521 -2.1453 35 1 6.2450 -4.9742 -3.0902 36 1 7.2339 -5.1316 -5.3364 37 1 6.1596 -4.0038 -7.2406 38 1 4.0917 -2.7133 -6.9114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181141460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:05 Heat of formation + Delta-G solvation = 75.569841 kcal Electronic energy + Delta-G solvation = -30033.049528 eV Core-core repulsion = 25655.010559 eV Total energy + Delta-G solvation = -4378.038969 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.100 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.45608 -40.49445 -39.64537 -38.28519 -36.77249 -35.85922 -34.48889 -33.85115 -32.45716 -32.24846 -30.89357 -30.53133 -27.54728 -26.90212 -25.62477 -24.26084 -23.43174 -22.86452 -20.77500 -19.68702 -19.15945 -18.77979 -18.11105 -17.76108 -17.24474 -16.92037 -16.30767 -15.98262 -15.88917 -15.49843 -15.12752 -14.93949 -14.35573 -14.18077 -13.81160 -13.42602 -13.32851 -13.16798 -12.91851 -12.69775 -12.41673 -12.19387 -12.16238 -11.86460 -11.69429 -11.62374 -11.45873 -11.31424 -11.26516 -11.08321 -10.93332 -10.62473 -10.44538 -10.34168 -10.14235 -9.79758 -9.47442 -9.28837 -8.61764 -8.22113 -6.68812 -3.99974 -0.58267 0.26349 1.00144 1.09741 1.59435 2.66054 2.81133 3.04159 3.18878 3.23629 3.41356 3.53366 3.75101 3.84340 3.86399 4.06486 4.07425 4.30016 4.38544 4.44130 4.51862 4.61272 4.76408 4.80222 4.98363 5.02928 5.13873 5.19271 5.30371 5.43397 5.49520 5.52998 5.68457 5.77394 5.80335 5.97889 6.15837 6.36968 7.23833 7.38173 7.41651 7.74010 8.16850 8.61386 8.87437 9.06802 9.59079 10.37936 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.003499 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.153933 B = 8000.055152 C = 8482.412058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.233 3.767 3 C 0.207 3.793 4 N -0.428 5.428 5 C -0.328 4.328 6 H 0.117 0.883 7 C 0.041 3.959 8 N -0.852 5.852 9 Si 0.917 3.083 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.450 3.550 14 O -0.551 6.551 15 C 0.042 3.958 16 H 0.107 0.893 17 C -0.127 4.127 18 C 0.102 3.898 19 C 0.044 3.956 20 C -0.088 4.088 21 C -0.065 4.065 22 C -0.109 4.109 23 C -0.053 4.053 24 C -0.025 4.025 25 N 0.024 4.976 26 O -0.150 6.150 27 O -0.148 6.148 28 N -0.260 5.260 29 O -0.151 6.151 30 H 0.136 0.864 31 H 0.085 0.915 32 H 0.276 0.724 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.116 -5.953 -20.249 24.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.085 4.085 3 C 0.079 3.921 4 N -0.149 5.149 5 C -0.454 4.454 6 H 0.134 0.866 7 C -0.165 4.165 8 N -0.489 5.489 9 Si 0.743 3.257 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.236 3.764 14 O -0.432 6.432 15 C -0.021 4.021 16 H 0.124 0.876 17 C -0.167 4.167 18 C -0.091 4.091 19 C 0.042 3.958 20 C -0.107 4.107 21 C -0.083 4.083 22 C -0.128 4.128 23 C -0.072 4.072 24 C -0.109 4.109 25 N 0.544 4.456 26 O -0.366 6.366 27 O -0.363 6.363 28 N 0.003 4.997 29 O -0.172 6.172 30 H 0.153 0.847 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.172 0.828 36 H 0.168 0.832 37 H 0.169 0.831 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 10.819 -7.709 -19.635 23.707 hybrid contribution 0.404 1.886 0.609 2.022 sum 11.223 -5.824 -19.026 22.844 Atomic orbital electron populations 1.80935 1.13402 1.09488 1.09636 1.29315 0.95352 0.92170 0.91701 1.19107 0.81860 1.00338 0.90761 1.43680 1.55516 1.03835 1.11904 1.19758 1.39317 0.93441 0.92848 0.86558 1.25226 0.95507 0.97439 0.98376 1.70159 1.20508 1.13626 1.44560 0.86054 0.80569 0.79276 0.79830 1.20005 1.21050 1.19018 1.19327 0.86278 0.82500 0.88258 1.90595 1.49538 1.58534 1.44575 1.23617 1.00037 0.82764 0.95651 0.87570 1.23121 1.01685 0.97237 0.94640 1.23762 0.96356 0.95293 0.93648 1.17608 0.94513 0.95451 0.88239 1.21461 0.93304 0.96894 0.99070 1.21603 0.99281 0.95778 0.91687 1.21375 0.94328 0.96492 1.00598 1.21051 0.94994 0.96246 0.94949 1.21224 0.89688 1.03641 0.96329 1.43532 1.01792 0.99709 1.00557 1.94543 1.67249 1.40137 1.34709 1.94618 1.60662 1.68245 1.12758 1.78402 1.06302 1.21892 0.93113 1.91345 1.82796 1.19774 1.23323 0.84682 0.89721 0.91356 0.87204 0.87218 0.82807 0.83226 0.83105 0.82306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -10.99 18.54 42.15 0.78 -10.21 16 2 C 0.23 5.23 13.42 -20.76 -0.28 4.95 16 3 C 0.21 4.11 4.88 -6.83 -0.03 4.08 16 4 N -0.43 -9.95 2.60 -117.93 -0.31 -10.25 16 5 C -0.33 -8.32 9.37 -14.93 -0.14 -8.46 16 6 H 0.12 3.16 7.37 -52.48 -0.39 2.77 16 7 C 0.04 0.98 4.66 -17.47 -0.08 0.90 16 8 N -0.85 -20.86 10.02 55.50 0.56 -20.31 16 9 Si 0.92 18.77 29.66 -169.99 -5.04 13.73 16 10 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.27 -5.56 7.11 56.52 0.40 -5.15 16 13 C 0.45 10.57 6.90 -10.98 -0.08 10.49 16 14 O -0.55 -15.08 16.17 -13.29 -0.21 -15.29 16 15 C 0.04 0.82 3.29 -26.89 -0.09 0.73 16 16 H 0.11 2.10 7.28 -51.93 -0.38 1.73 16 17 C -0.13 -1.95 4.72 -26.40 -0.12 -2.07 16 18 C 0.10 1.47 4.92 -79.42 -0.39 1.08 16 19 C 0.04 0.47 5.84 -105.03 -0.61 -0.14 16 20 C -0.09 -0.63 9.79 -39.17 -0.38 -1.01 16 21 C -0.07 -0.27 10.03 -39.64 -0.40 -0.67 16 22 C -0.11 -0.42 10.04 -39.49 -0.40 -0.82 16 23 C -0.05 -0.35 9.55 -39.64 -0.38 -0.73 16 24 C -0.02 -0.25 6.87 -79.54 -0.55 -0.80 16 25 N 0.02 0.33 4.45 34.16 0.15 0.48 16 26 O -0.15 -2.00 18.47 -29.46 -0.54 -2.55 16 27 O -0.15 -2.34 14.17 -29.46 -0.42 -2.75 16 28 N -0.26 -4.54 12.53 35.30 0.44 -4.10 16 29 O -0.15 -3.18 11.82 -30.20 -0.36 -3.53 16 30 H 0.14 2.69 6.07 -51.93 -0.32 2.38 16 31 H 0.09 1.34 4.69 -51.93 -0.24 1.10 16 32 H 0.28 6.43 8.31 -40.82 -0.34 6.09 16 33 H 0.11 1.57 7.91 -51.93 -0.41 1.16 16 34 H 0.11 1.50 4.95 -51.93 -0.26 1.25 16 35 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.15 0.15 8.06 -52.49 -0.42 -0.28 16 37 H 0.15 0.11 8.06 -52.49 -0.42 -0.32 16 38 H 0.16 0.80 7.62 -52.49 -0.40 0.40 16 LS Contribution 342.42 15.07 5.16 5.16 Total: -1.00 -34.46 342.42 -6.51 -40.97 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -2.79 Total: 1.14 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -3.93 Total: 7.52 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 1.63 Total: -44.40 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -1.53 Total: -24.13 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.04 Total: 13.73 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.46 -6.51 -40.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181141460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.543 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds