Wall clock time and date at job start Wed Apr 1 2020 03:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46992 * 308.86132 * 3 2 1 5 5 C 1.37099 * 120.00150 * 264.81837 * 4 3 2 6 6 H 1.08007 * 120.00112 * 186.24158 * 5 4 3 7 7 C 1.38950 * 120.00045 * 6.24406 * 5 4 3 8 8 N 1.31411 * 119.99764 * 34.02255 * 7 5 4 9 9 Si 1.86797 * 119.99875 * 214.02421 * 7 5 4 10 10 H 1.48505 * 109.47094 * 94.99847 * 9 7 5 11 11 H 1.48506 * 109.46914 * 214.99406 * 9 7 5 12 12 H 1.48495 * 109.47452 * 334.99675 * 9 7 5 13 13 C 1.34782 * 120.00042 * 84.81718 * 4 3 2 14 14 O 1.21295 * 120.00182 * 179.97438 * 13 4 3 15 15 C 1.50696 * 119.99732 * 0.02562 * 13 4 3 16 16 H 1.09000 * 110.86221 * 307.34012 * 15 13 4 17 17 C 1.54893 * 110.86658 * 71.34184 * 15 13 4 18 18 C 1.51685 * 102.47814 * 142.56155 * 17 15 13 19 19 C 1.47648 * 125.86717 * 164.52491 * 18 17 15 20 20 C 1.39634 * 120.15122 * 112.79962 * 19 18 17 21 21 C 1.37926 * 119.84886 * 180.02562 * 20 19 18 22 22 C 1.38378 * 120.15462 * 0.02562 * 21 20 19 23 23 C 1.38339 * 120.29688 * 359.97438 * 22 21 20 24 24 C 1.37979 * 120.14920 * 0.02562 * 23 22 21 25 25 N 1.48016 * 120.07414 * 180.27514 * 24 23 22 26 26 O 1.21808 * 120.00040 * 353.83079 * 25 24 23 27 27 O 1.21797 * 120.00253 * 173.83486 * 25 24 23 28 28 N 1.29081 * 108.27084 * 344.26226 * 18 17 15 29 29 O 1.41390 * 112.86915 * 359.92144 * 28 18 17 30 30 H 1.08997 * 109.47324 * 188.86496 * 3 2 1 31 31 H 1.08993 * 109.47653 * 68.85894 * 3 2 1 32 32 H 0.96997 * 119.99591 * 180.02562 * 8 7 5 33 33 H 1.08999 * 110.91634 * 24.27795 * 17 15 13 34 34 H 1.09003 * 110.73536 * 260.76016 * 17 15 13 35 35 H 1.08001 * 120.07073 * 0.02562 * 20 19 18 36 36 H 1.08001 * 119.92344 * 179.97438 * 21 20 19 37 37 H 1.07994 * 119.85437 * 179.97438 * 22 21 20 38 38 H 1.07999 * 119.92591 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0967 -0.8658 1.0755 5 6 3.4260 -0.3280 2.2929 6 1 3.8804 -0.9477 3.0519 7 6 3.1752 1.0142 2.5503 8 7 2.1194 1.5971 2.0284 9 14 4.3388 1.9899 3.6380 10 1 5.3280 2.7029 2.7903 11 1 3.5638 2.9775 4.4313 12 1 5.0498 1.0653 4.5571 13 6 3.2225 -2.1916 0.8683 14 8 3.6275 -2.9089 1.7586 15 6 2.8610 -2.7826 -0.4700 16 1 1.8553 -2.4850 -0.7669 17 6 3.9023 -2.3882 -1.5467 18 6 3.9999 -3.6484 -2.3853 19 6 4.5983 -3.7475 -3.7315 20 6 5.7720 -4.4787 -3.9252 21 6 6.3259 -4.5667 -5.1853 22 6 5.7215 -3.9320 -6.2562 23 6 4.5586 -3.2060 -6.0713 24 6 3.9938 -3.1097 -4.8161 25 7 2.7462 -2.3375 -4.6213 26 8 2.2779 -1.6940 -5.5434 27 8 2.1877 -2.3454 -3.5389 28 7 3.4750 -4.6205 -1.7177 29 8 2.9899 -4.2188 -0.4518 30 1 2.9709 1.0162 0.1584 31 1 2.9715 -0.3698 -0.9584 32 1 1.9445 2.5342 2.2078 33 1 4.8635 -2.1517 -1.0903 34 1 3.5407 -1.5521 -2.1453 35 1 6.2450 -4.9742 -3.0902 36 1 7.2339 -5.1316 -5.3364 37 1 6.1596 -4.0038 -7.2406 38 1 4.0917 -2.7133 -6.9114 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181141460.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:04 Heat of formation + Delta-G solvation = 53.767475 kcal Electronic energy + Delta-G solvation = -30033.994950 eV Core-core repulsion = 25655.010559 eV Total energy + Delta-G solvation = -4378.984390 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 344.100 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.36683 -41.86250 -40.51580 -39.81211 -37.81700 -37.69454 -36.37069 -34.94098 -34.10793 -33.06528 -32.07777 -31.68729 -29.32123 -27.73441 -27.35826 -25.23638 -24.75081 -23.57822 -21.84061 -21.18670 -20.11324 -19.94297 -19.69564 -18.87281 -18.64161 -18.16972 -17.82014 -17.20357 -16.91973 -16.55803 -16.39069 -16.03987 -15.85422 -15.38529 -15.17293 -14.86131 -14.60601 -14.49802 -14.11430 -14.00297 -13.93431 -13.63932 -13.34101 -13.28378 -13.10164 -13.01461 -12.72072 -12.64768 -12.46857 -12.34170 -12.28485 -12.14325 -12.10183 -11.99770 -11.18791 -11.00853 -10.66216 -10.52675 -10.25098 -10.11848 -8.57523 -5.97310 -1.38626 -0.28578 0.22469 0.30673 0.48396 1.21320 1.44948 1.52365 1.61368 1.73840 1.83224 2.04630 2.22601 2.29854 2.54672 2.79004 2.97799 3.14798 3.23861 3.30428 3.34591 3.61669 3.64778 3.86856 3.92848 3.95159 4.06319 4.08775 4.34567 4.37773 4.50990 4.64524 4.69062 4.74769 4.99809 5.10055 5.13851 5.44124 5.48345 5.78507 5.96888 6.26982 6.38144 6.78257 6.96060 7.16832 7.71904 8.48630 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.014601 B = 0.003499 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.153933 B = 8000.055152 C = 8482.412058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.244 3.756 3 C 0.210 3.790 4 N -0.430 5.430 5 C -0.364 4.364 6 H 0.088 0.912 7 C 0.021 3.979 8 N -0.868 5.868 9 Si 0.985 3.015 10 H -0.252 1.252 11 H -0.283 1.283 12 H -0.276 1.276 13 C 0.442 3.558 14 O -0.602 6.602 15 C 0.049 3.951 16 H 0.097 0.903 17 C -0.123 4.123 18 C 0.139 3.861 19 C 0.007 3.993 20 C -0.087 4.087 21 C -0.042 4.042 22 C -0.084 4.084 23 C -0.048 4.048 24 C -0.043 4.043 25 N 0.027 4.973 26 O -0.135 6.135 27 O -0.222 6.222 28 N -0.290 5.290 29 O -0.198 6.198 30 H 0.141 0.859 31 H 0.126 0.874 32 H 0.283 0.717 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.160 0.840 36 H 0.195 0.805 37 H 0.199 0.801 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.489 -5.384 -24.209 29.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.075 4.075 3 C 0.084 3.916 4 N -0.150 5.150 5 C -0.490 4.490 6 H 0.106 0.894 7 C -0.185 4.185 8 N -0.504 5.504 9 Si 0.808 3.192 10 H -0.177 1.177 11 H -0.209 1.209 12 H -0.201 1.201 13 C 0.230 3.770 14 O -0.487 6.487 15 C -0.014 4.014 16 H 0.115 0.885 17 C -0.163 4.163 18 C -0.054 4.054 19 C 0.005 3.995 20 C -0.107 4.107 21 C -0.059 4.059 22 C -0.102 4.102 23 C -0.067 4.067 24 C -0.127 4.127 25 N 0.541 4.459 26 O -0.360 6.360 27 O -0.421 6.421 28 N -0.032 5.032 29 O -0.216 6.216 30 H 0.159 0.841 31 H 0.143 0.857 32 H 0.093 0.907 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.178 0.822 36 H 0.212 0.788 37 H 0.216 0.784 38 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 14.132 -7.132 -23.478 28.316 hybrid contribution -0.507 1.687 1.546 2.344 sum 13.625 -5.445 -21.932 26.388 Atomic orbital electron populations 1.80922 1.14497 1.10668 1.10776 1.29781 0.95865 0.91129 0.90684 1.19393 0.80349 1.00308 0.91600 1.43775 1.54874 1.04204 1.12107 1.19648 1.41403 0.94263 0.93701 0.89432 1.25923 0.95982 0.97196 0.99380 1.70199 1.20939 1.14132 1.45125 0.85076 0.78590 0.77399 0.78165 1.17668 1.20915 1.20119 1.19962 0.85409 0.82369 0.89279 1.90540 1.51815 1.59743 1.46570 1.23336 1.00663 0.82858 0.94505 0.88530 1.23113 1.00848 0.98492 0.93798 1.24269 0.93030 0.93588 0.94494 1.17692 0.96659 0.98975 0.86200 1.21720 0.91993 0.95830 1.01146 1.22148 0.99749 0.94192 0.89836 1.21988 0.92235 0.93458 1.02526 1.21503 0.95605 0.96087 0.93548 1.21403 0.88712 1.04729 0.97867 1.44005 1.02552 0.99442 0.99913 1.94488 1.67633 1.39632 1.34288 1.94628 1.62842 1.70834 1.13781 1.78419 1.09657 1.22717 0.92396 1.91301 1.83900 1.20051 1.26318 0.84133 0.85710 0.90666 0.86027 0.85470 0.82242 0.78813 0.78418 0.80530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -24.32 18.54 20.01 0.37 -23.95 16 2 C 0.24 11.22 13.42 89.44 1.20 12.42 16 3 C 0.21 8.49 4.88 84.57 0.41 8.90 16 4 N -0.43 -20.81 2.60 -645.41 -1.68 -22.49 16 5 C -0.36 -19.23 9.37 84.04 0.79 -18.44 16 6 H 0.09 5.07 7.37 -2.91 -0.02 5.05 16 7 C 0.02 1.01 4.66 84.93 0.40 1.41 16 8 N -0.87 -42.50 10.02 21.66 0.22 -42.28 16 9 Si 0.98 38.38 29.66 68.60 2.03 40.41 16 10 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 11 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 12 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 13 C 0.44 22.07 6.90 87.66 0.61 22.68 16 14 O -0.60 -35.34 16.17 14.93 0.24 -35.10 16 15 C 0.05 2.05 3.29 30.49 0.10 2.15 16 16 H 0.10 4.16 7.28 -2.39 -0.02 4.14 16 17 C -0.12 -3.88 4.72 30.81 0.15 -3.74 16 18 C 0.14 4.09 4.92 45.76 0.23 4.32 16 19 C 0.01 0.14 5.84 -20.13 -0.12 0.03 16 20 C -0.09 -0.96 9.79 22.53 0.22 -0.74 16 21 C -0.04 -0.08 10.03 22.23 0.22 0.14 16 22 C -0.08 -0.09 10.04 22.33 0.22 0.13 16 23 C -0.05 -0.42 9.55 22.23 0.21 -0.21 16 24 C -0.04 -0.79 6.87 36.64 0.25 -0.54 16 25 N 0.03 0.72 4.45 -45.83 -0.20 0.52 16 26 O -0.13 -3.46 18.47 18.88 0.35 -3.11 16 27 O -0.22 -7.29 14.17 18.89 0.27 -7.03 16 28 N -0.29 -10.71 12.53 -42.23 -0.53 -11.24 16 29 O -0.20 -9.04 11.82 -20.31 -0.24 -9.28 16 30 H 0.14 5.58 6.07 -2.39 -0.01 5.57 16 31 H 0.13 3.98 4.69 -2.39 -0.01 3.97 16 32 H 0.28 12.97 8.31 -92.71 -0.77 12.20 16 33 H 0.12 3.53 7.91 -2.39 -0.02 3.51 16 34 H 0.13 3.54 4.95 -2.39 -0.01 3.53 16 35 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 36 H 0.19 -1.17 8.06 -2.91 -0.02 -1.19 16 37 H 0.20 -1.46 8.06 -2.91 -0.02 -1.48 16 38 H 0.18 0.92 7.62 -2.91 -0.02 0.90 16 Total: -1.00 -83.25 342.42 6.88 -76.37 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.16 Total: 8.68 kcal Atomic # 6 Polarization: 23.61 SS G_CDS: 4.89 Total: 28.50 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -1.82 Total: -99.44 kcal Atomic # 8 Polarization: -55.14 SS G_CDS: 0.62 Total: -54.52 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -83.25 6.88 -76.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181141460.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.137 kcal (2) G-P(sol) polarization free energy of solvation -83.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds