Wall clock time and date at job start Wed Apr 1 2020 01:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46920 * 2 1 4 4 H 1.08997 * 109.46848 * 305.56620 * 3 2 1 5 5 C 1.50703 * 109.47050 * 185.56413 * 3 2 1 6 6 H 1.07997 * 120.00427 * 244.99880 * 5 3 2 7 7 C 1.37884 * 119.99486 * 64.99224 * 5 3 2 8 8 N 1.31508 * 120.00419 * 9.04651 * 7 5 3 9 9 Si 1.86806 * 119.99713 * 189.03974 * 7 5 3 10 10 H 1.48496 * 109.47113 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.46980 * 300.00720 * 9 7 5 12 12 H 1.48497 * 109.46948 * 60.00485 * 9 7 5 13 13 N 1.46501 * 109.47008 * 65.56544 * 3 2 1 14 14 S 1.65596 * 119.99801 * 215.09830 * 13 3 2 15 15 O 1.42105 * 106.40290 * 179.37286 * 14 13 3 16 16 O 1.42100 * 106.40565 * 312.29118 * 14 13 3 17 17 C 1.76201 * 107.21936 * 65.83458 * 14 13 3 18 18 C 1.38283 * 119.97293 * 93.67979 * 17 14 13 19 19 C 1.38245 * 120.11077 * 179.97438 * 18 17 14 20 20 C 1.38165 * 120.05830 * 0.02562 * 19 18 17 21 21 N 1.48001 * 120.03016 * 179.97438 * 20 19 18 22 22 O 1.21799 * 119.99645 * 0.02562 * 21 20 19 23 23 O 1.21796 * 119.99817 * 179.97438 * 21 20 19 24 24 C 1.38711 * 119.93980 * 0.02562 * 20 19 18 25 25 O 1.35900 * 120.05371 * 179.97438 * 24 20 19 26 26 C 1.42899 * 117.00113 * 179.97438 * 25 24 20 27 27 C 1.38118 * 119.96898 * 273.41173 * 17 14 13 28 28 H 1.08999 * 109.47117 * 184.55960 * 1 2 3 29 29 H 1.08999 * 109.47780 * 304.56619 * 1 2 3 30 30 H 1.09008 * 109.47021 * 64.56542 * 1 2 3 31 31 H 1.08995 * 109.47380 * 239.99955 * 2 1 3 32 32 H 1.09001 * 109.46688 * 119.99254 * 2 1 3 33 33 H 0.97000 * 119.99923 * 356.97073 * 8 7 5 34 34 H 0.97004 * 120.00196 * 35.10479 * 13 3 2 35 35 H 1.08005 * 119.94683 * 0.02562 * 18 17 14 36 36 H 1.08000 * 119.96876 * 180.02562 * 19 18 17 37 37 H 1.09000 * 109.47187 * 59.99464 * 26 25 24 38 38 H 1.08997 * 109.47066 * 179.97438 * 26 25 24 39 39 H 1.09005 * 109.46707 * 299.99544 * 26 25 24 40 40 H 1.08000 * 120.03204 * 359.97438 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5975 1.9843 -0.8359 5 6 3.5407 1.4448 -0.1378 6 1 4.1565 1.8133 0.6693 7 6 4.1274 0.9763 -1.2942 8 7 3.3837 0.6949 -2.3417 9 14 5.9790 0.7414 -1.3732 10 1 6.3565 0.2320 -2.7160 11 1 6.6537 2.0417 -1.1297 12 1 6.3986 -0.2358 -0.3367 13 7 1.6640 2.0934 1.2575 14 16 1.2650 3.7005 1.2710 15 8 0.9398 4.0219 2.6165 16 8 2.2782 4.3718 0.5348 17 6 -0.2230 3.8763 0.3439 18 6 -1.4458 3.8537 0.9892 19 6 -2.6150 3.9919 0.2646 20 6 -2.5645 4.1525 -1.1067 21 7 -3.8166 4.2998 -1.8819 22 8 -4.8922 4.2800 -1.3108 23 8 -3.7714 4.4418 -3.0907 24 6 -1.3392 4.1745 -1.7565 25 8 -1.2868 4.3318 -3.1053 26 6 0.0093 4.3455 -3.7070 27 6 -0.1668 4.0421 -1.0262 28 1 -0.3633 -1.0244 0.0817 29 1 -0.3634 0.5830 0.8462 30 1 -0.3633 0.4414 -0.9281 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 2.4186 0.7749 -2.2868 34 1 1.6489 1.5829 2.0823 35 1 -1.4875 3.7286 2.0612 36 1 -3.5688 3.9743 0.7710 37 1 0.5149 3.4018 -3.5023 38 1 -0.0917 4.4770 -4.7843 39 1 0.5932 5.1677 -3.2934 40 1 0.7887 4.0645 -1.5291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186434756.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:42 Heat of formation + Delta-G solvation = -109.967299 kcal Electronic energy + Delta-G solvation = -29447.846339 eV Core-core repulsion = 25164.913077 eV Total energy + Delta-G solvation = -4282.933263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.44781 -41.57433 -39.11969 -38.55967 -38.03292 -37.69241 -37.06863 -34.26677 -33.66687 -32.48597 -31.95739 -28.76439 -28.12820 -27.95598 -25.03629 -24.13322 -24.02569 -22.22174 -21.06873 -20.73458 -19.93835 -19.66320 -19.10852 -18.81231 -18.58460 -18.02240 -17.42245 -17.13409 -16.99770 -16.09006 -15.93464 -15.66770 -15.30889 -15.09878 -14.96772 -14.74505 -14.42011 -14.09405 -13.54060 -13.39455 -13.33701 -13.21781 -13.09544 -13.00715 -12.79062 -12.68385 -12.60194 -12.57635 -12.42795 -12.33685 -12.15104 -11.94290 -11.85222 -11.75138 -11.48481 -11.28583 -10.45606 -10.04739 -9.96404 -8.53973 -6.28241 -1.69565 -0.80625 -0.37626 -0.13270 0.12780 1.58396 1.62073 1.62421 1.63834 1.81799 2.02418 2.53889 2.60629 2.88837 2.98772 3.19495 3.47017 3.53308 3.62347 3.89057 4.10455 4.11789 4.16720 4.22343 4.28979 4.30776 4.42934 4.49447 4.58207 4.60834 4.85754 4.88484 5.08652 5.09547 5.14305 5.46953 5.51330 5.64092 6.00002 6.16866 6.36854 6.41085 6.65530 7.44080 8.82219 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.013080 B = 0.004380 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.232795 B = 6391.222079 C = 7196.903991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 C 0.272 3.728 4 H 0.022 0.978 5 C -0.616 4.616 6 H 0.048 0.952 7 C -0.014 4.014 8 N -0.928 5.928 9 Si 1.098 2.902 10 H -0.285 1.285 11 H -0.282 1.282 12 H -0.271 1.271 13 N -1.087 6.087 14 S 2.703 3.297 15 O -0.969 6.969 16 O -0.974 6.974 17 C -0.590 4.590 18 C -0.054 4.054 19 C -0.025 4.025 20 C -0.053 4.053 21 N 0.033 4.967 22 O -0.152 6.152 23 O -0.171 6.171 24 C 0.172 3.828 25 O -0.292 6.292 26 C 0.005 3.995 27 C -0.118 4.118 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.264 0.736 34 H 0.423 0.577 35 H 0.196 0.804 36 H 0.202 0.798 37 H 0.061 0.939 38 H 0.141 0.859 39 H 0.074 0.926 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.172 3.941 4.946 11.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C 0.166 3.834 4 H 0.039 0.961 5 C -0.655 4.655 6 H 0.066 0.934 7 C -0.215 4.215 8 N -0.565 5.565 9 Si 0.922 3.078 10 H -0.211 1.211 11 H -0.208 1.208 12 H -0.196 1.196 13 N -0.849 5.849 14 S 2.790 3.210 15 O -0.959 6.959 16 O -0.964 6.964 17 C -0.675 4.675 18 C -0.074 4.074 19 C -0.044 4.044 20 C -0.137 4.137 21 N 0.550 4.450 22 O -0.370 6.370 23 O -0.383 6.383 24 C 0.121 3.879 25 O -0.203 6.203 26 C -0.088 4.088 27 C -0.138 4.138 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.259 0.741 35 H 0.213 0.787 36 H 0.218 0.782 37 H 0.080 0.920 38 H 0.159 0.841 39 H 0.093 0.907 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.030 4.234 4.333 10.059 hybrid contribution -1.612 0.060 0.275 1.636 sum -9.641 4.294 4.607 11.516 Atomic orbital electron populations 1.21802 0.95535 1.01949 1.01073 1.21798 0.95134 0.97700 1.01707 1.18461 0.93967 0.90886 0.80095 0.96087 1.22580 0.92865 1.45519 1.04573 0.93405 1.26733 1.09803 0.93259 0.91663 1.70948 1.07192 1.48087 1.30260 0.83146 0.71084 0.77202 0.76348 1.21064 1.20814 1.19581 1.55140 1.82901 1.29319 1.17553 1.01618 0.73452 0.73158 0.72792 1.93553 1.85183 1.83302 1.33838 1.93604 1.55119 1.73517 1.74117 1.31523 1.21547 1.08106 1.06282 1.21253 0.88004 0.95448 1.02648 1.21447 1.02795 0.91566 0.88569 1.21025 0.81574 1.17809 0.93331 1.43491 1.02415 0.97718 1.01377 1.94485 1.16615 1.53557 1.72347 1.94619 1.94132 1.53328 0.96212 1.18808 0.91704 0.92263 0.85113 1.86377 1.33972 1.84855 1.15085 1.23680 0.81188 1.02854 1.01094 1.21165 0.98251 1.00925 0.93475 0.91929 0.91480 0.94619 0.93052 0.91852 0.92565 0.74055 0.78653 0.78151 0.92045 0.84132 0.90732 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 9.86 71.98 0.71 -3.57 16 2 C -0.12 -4.58 5.22 30.60 0.16 -4.42 16 3 C 0.27 11.10 1.77 44.25 0.08 11.18 16 4 H 0.02 0.92 6.37 -2.39 -0.02 0.90 16 5 C -0.62 -30.52 8.77 25.60 0.22 -30.30 16 6 H 0.05 2.44 7.83 -2.91 -0.02 2.42 16 7 C -0.01 -0.71 5.16 84.66 0.44 -0.28 16 8 N -0.93 -49.56 13.02 21.45 0.28 -49.29 16 9 Si 1.10 46.89 29.91 68.60 2.05 48.94 16 10 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 13 N -1.09 -35.96 4.86 -172.51 -0.84 -36.80 16 14 S 2.70 87.21 5.65 -56.49 -0.32 86.89 16 15 O -0.97 -30.79 17.19 -128.00 -2.20 -32.99 16 16 O -0.97 -40.02 17.11 -128.00 -2.19 -42.21 16 17 C -0.59 -16.01 5.88 22.25 0.13 -15.88 16 18 C -0.05 -1.10 9.52 22.28 0.21 -0.89 16 19 C -0.02 -0.49 9.55 22.25 0.21 -0.27 16 20 C -0.05 -1.40 6.87 36.47 0.25 -1.15 16 21 N 0.03 0.96 4.45 -46.25 -0.21 0.75 16 22 O -0.15 -4.21 18.45 18.89 0.35 -3.86 16 23 O -0.17 -5.59 17.24 25.61 0.44 -5.15 16 24 C 0.17 4.93 6.67 22.51 0.15 5.08 16 25 O -0.29 -8.40 8.51 -71.27 -0.61 -9.01 16 26 C 0.01 0.13 9.81 113.37 1.11 1.24 16 27 C -0.12 -3.45 7.75 22.37 0.17 -3.28 16 28 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.65 7.65 -2.39 -0.02 1.63 16 30 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 31 H 0.05 2.21 6.31 -2.39 -0.02 2.20 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.26 13.74 6.04 -92.71 -0.56 13.18 16 34 H 0.42 11.65 8.84 -96.74 -0.86 10.80 16 35 H 0.20 2.77 7.54 -2.91 -0.02 2.75 16 36 H 0.20 2.56 7.61 -2.91 -0.02 2.54 16 37 H 0.06 1.59 7.68 -2.39 -0.02 1.57 16 38 H 0.14 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.07 1.61 7.65 -2.38 -0.02 1.60 16 40 H 0.16 4.97 5.79 -2.91 -0.02 4.95 16 Total: -1.00 -67.08 356.40 1.07 -66.01 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.46 Total: 19.24 kcal Atomic # 6 Polarization: -46.38 SS G_CDS: 3.85 Total: -42.53 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -0.76 Total: -85.33 kcal Atomic # 8 Polarization: -89.01 SS G_CDS: -4.21 Total: -93.22 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.05 Total: 48.94 kcal Atomic # 16 Polarization: 87.21 SS G_CDS: -0.32 Total: 86.89 kcal Total: -67.08 1.07 -66.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186434756.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.954 kcal (2) G-P(sol) polarization free energy of solvation -67.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds