Wall clock time and date at job start Wed Apr 1 2020 03:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.76195 * 103.00215 * 2 1 4 4 C 1.39075 * 120.01862 * 89.99848 * 3 2 1 5 5 F 1.35103 * 120.00497 * 359.97438 * 4 3 2 6 6 C 1.38217 * 119.98521 * 180.02562 * 4 3 2 7 7 C 1.38940 * 120.01644 * 0.02620 * 6 4 3 8 8 N 1.39854 * 119.98424 * 179.97438 * 7 6 4 9 9 C 1.34776 * 119.99814 * 144.06659 * 8 7 6 10 10 O 1.21391 * 119.99983 * 4.65148 * 9 8 7 11 11 C 1.49316 * 119.99844 * 184.37654 * 9 8 7 12 12 O 1.21366 * 120.00073 * 354.52346 * 11 9 8 13 13 N 1.34772 * 119.99957 * 174.51878 * 11 9 8 14 14 C 1.46496 * 120.00246 * 3.44702 * 13 11 9 15 15 C 1.46497 * 120.00102 * 183.44352 * 13 11 9 16 16 C 1.50708 * 109.47198 * 90.00399 * 15 13 11 17 17 H 1.07996 * 119.99938 * 359.97438 * 16 15 13 18 18 C 1.37877 * 120.00016 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99450 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00085 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47108 * 90.00414 * 20 18 16 22 22 H 1.48503 * 109.47097 * 210.00279 * 20 18 16 23 23 H 1.48501 * 109.47358 * 330.00079 * 20 18 16 24 24 C 1.38937 * 120.02990 * 0.23256 * 7 6 4 25 25 C 1.38221 * 120.01918 * 359.48474 * 24 7 6 26 26 F 1.35096 * 120.00936 * 180.28393 * 25 24 7 27 27 H 1.09000 * 109.46796 * 60.00072 * 1 2 3 28 28 H 1.08994 * 109.46993 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47049 * 300.00153 * 1 2 3 30 30 H 1.07996 * 119.99194 * 179.97438 * 6 4 3 31 31 H 0.96998 * 119.99900 * 324.07259 * 8 7 6 32 32 H 1.09000 * 109.47279 * 84.18871 * 14 13 11 33 33 H 1.09000 * 109.47612 * 204.19659 * 14 13 11 34 34 H 1.09006 * 109.47121 * 324.19158 * 14 13 11 35 35 H 1.09001 * 109.47708 * 209.99816 * 15 13 11 36 36 H 1.09003 * 109.47722 * 330.00658 * 15 13 11 37 37 H 0.97003 * 119.99109 * 179.97438 * 19 18 16 38 38 H 1.08004 * 119.98685 * 179.72855 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 2.3670 2.3947 1.2042 5 9 2.2146 1.7371 2.3745 6 6 2.6775 3.7416 1.2034 7 6 2.8326 4.4183 -0.0001 8 7 3.1462 5.7813 -0.0001 9 6 3.9645 6.2844 -0.9455 10 8 4.3616 5.5733 -1.8456 11 6 4.3775 7.7182 -0.8892 12 8 3.8994 8.4550 -0.0517 13 7 5.2814 8.1941 -1.7684 14 6 5.8021 7.3250 -2.8264 15 6 5.7431 9.5807 -1.6660 16 6 6.9550 9.6419 -0.7722 17 1 7.3421 8.7385 -0.3248 18 6 7.5687 10.8515 -0.5249 19 7 8.6259 10.9050 0.2556 20 14 6.8985 12.4143 -1.2981 21 1 5.8912 13.0223 -0.3921 22 1 8.0103 13.3741 -1.5176 23 1 6.2615 12.0889 -2.5995 24 6 2.6711 3.7430 -1.2034 25 6 2.3664 2.3948 -1.2043 26 9 2.2151 1.7370 -2.3745 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.7986 4.2682 2.1384 31 1 2.7749 6.3644 0.6803 32 1 5.1140 7.3294 -3.6718 33 1 6.7771 7.6899 -3.1495 34 1 5.9027 6.3087 -2.4452 35 1 6.0040 9.9510 -2.6575 36 1 4.9495 10.1979 -1.2448 37 1 9.0579 11.7559 0.4293 38 1 2.7876 4.2707 -2.1385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283364142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:07 Heat of formation + Delta-G solvation = -100.006106 kcal Electronic energy + Delta-G solvation = -26970.961472 eV Core-core repulsion = 22577.372643 eV Total energy + Delta-G solvation = -4393.588829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.079 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.42424 -49.35317 -41.21792 -39.32314 -37.98079 -35.87435 -34.63908 -32.62409 -30.86514 -30.49163 -29.19044 -28.82844 -26.54766 -25.12760 -23.63429 -23.22751 -21.66845 -19.98336 -18.90526 -18.04150 -17.92232 -17.27261 -17.14319 -16.63051 -16.45798 -16.13328 -15.83894 -15.66316 -15.65347 -15.46379 -15.05782 -14.50073 -14.40688 -14.01066 -13.83324 -13.60076 -13.41116 -13.27367 -12.83400 -12.67517 -12.54233 -12.48811 -12.36522 -12.17584 -11.76384 -11.26067 -11.17394 -10.86364 -10.65125 -10.41240 -10.25005 -9.67701 -9.28807 -9.09562 -8.82867 -8.71835 -8.14528 -8.01946 -6.21305 -4.22740 0.09557 0.53935 1.18746 1.50432 2.09057 2.23567 2.87021 3.20539 3.26313 3.27837 3.33243 3.43923 3.71669 3.87544 4.24116 4.27798 4.41905 4.51627 4.72748 4.76826 4.77426 5.10876 5.13105 5.28390 5.33202 5.38323 5.62776 5.66776 5.79828 5.91260 6.23264 6.37328 6.39540 6.67874 6.74276 6.95011 7.40602 7.49104 7.82934 8.22084 8.41391 8.80413 9.36423 10.91512 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.026213 B = 0.002309 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.933900 B =12121.890673 C =12613.227883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.114 6.114 3 C -0.225 4.225 4 C 0.196 3.804 5 F -0.111 7.111 6 C -0.198 4.198 7 C 0.238 3.762 8 N -0.651 5.651 9 C 0.514 3.486 10 O -0.490 6.490 11 C 0.500 3.500 12 O -0.521 6.521 13 N -0.553 5.553 14 C 0.065 3.935 15 C 0.212 3.788 16 C -0.538 4.538 17 H 0.076 0.924 18 C 0.075 3.925 19 N -0.892 5.892 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.265 1.265 24 C -0.178 4.178 25 C 0.196 3.804 26 F -0.111 7.111 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.431 0.569 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.040 0.960 36 H 0.043 0.957 37 H 0.267 0.733 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.770 -18.353 -1.819 24.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.116 5.884 3 C -0.339 4.339 4 C 0.173 3.827 5 F -0.089 7.089 6 C -0.221 4.221 7 C 0.141 3.859 8 N -0.298 5.298 9 C 0.299 3.701 10 O -0.363 6.363 11 C 0.280 3.720 12 O -0.398 6.398 13 N -0.284 5.284 14 C -0.077 4.077 15 C 0.092 3.908 16 C -0.576 4.576 17 H 0.094 0.906 18 C -0.128 4.128 19 N -0.529 5.529 20 Si 0.703 3.297 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.190 1.190 24 C -0.200 4.200 25 C 0.173 3.827 26 F -0.089 7.089 27 H 0.098 0.902 28 H 0.126 0.874 29 H 0.098 0.902 30 H 0.174 0.826 31 H 0.271 0.729 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.113 0.887 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -15.867 -19.204 -1.991 24.990 hybrid contribution -1.068 2.028 0.065 2.293 sum -16.935 -17.175 -1.926 24.197 Atomic orbital electron populations 1.23658 0.94924 1.06796 1.05415 1.85607 1.06449 0.98942 1.97357 1.21677 1.18241 1.00497 0.93442 1.16918 0.95989 0.89117 0.80687 1.91594 1.92165 1.80667 1.44510 1.20900 1.09181 0.92855 0.99115 1.17158 0.92564 0.83854 0.92312 1.43373 1.46917 1.06807 1.32726 1.21065 0.77824 0.90014 0.81228 1.90684 1.51769 1.61007 1.32818 1.19316 0.82558 0.86405 0.83711 1.90761 1.55069 1.57901 1.36072 1.47798 1.38199 1.14622 1.27752 1.22300 0.99482 0.96103 0.89845 1.19936 0.96250 0.76461 0.98165 1.21236 1.10720 0.96069 1.29555 0.90552 1.24843 0.94563 0.98811 0.94583 1.69889 1.20283 1.26345 1.36407 0.86843 0.79066 0.83445 0.80314 1.19748 1.20859 1.18964 1.21270 1.05540 0.92992 1.00235 1.17072 0.95629 0.89334 0.80666 1.91589 1.92097 1.80599 1.44567 0.90182 0.87439 0.90186 0.82623 0.72931 0.92915 0.90644 0.88679 0.94205 0.93917 0.92315 0.81748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 10.72 101.05 1.08 0.13 16 2 S -0.11 -1.16 21.51 -107.50 -2.31 -3.47 16 3 C -0.22 -2.44 5.71 -38.96 -0.22 -2.66 16 4 C 0.20 2.02 7.27 -39.28 -0.29 1.73 16 5 F -0.11 -1.16 16.75 2.25 0.04 -1.12 16 6 C -0.20 -1.88 9.94 -39.33 -0.39 -2.27 16 7 C 0.24 2.58 6.28 -83.68 -0.53 2.05 16 8 N -0.65 -7.63 5.32 -10.27 -0.05 -7.69 16 9 C 0.51 7.67 7.61 -11.65 -0.09 7.58 16 10 O -0.49 -7.47 10.63 5.46 0.06 -7.41 16 11 C 0.50 9.35 7.73 -11.65 -0.09 9.26 16 12 O -0.52 -10.91 16.04 5.48 0.09 -10.83 16 13 N -0.55 -10.95 2.86 -183.52 -0.52 -11.47 16 14 C 0.07 1.06 9.55 59.84 0.57 1.63 16 15 C 0.21 4.87 4.23 -5.19 -0.02 4.84 16 16 C -0.54 -14.72 9.94 -34.44 -0.34 -15.07 16 17 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 18 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.89 -26.51 13.96 55.43 0.77 -25.74 16 20 Si 0.88 20.48 27.47 -169.99 -4.67 15.81 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 24 C -0.18 -2.01 8.66 -39.33 -0.34 -2.35 16 25 C 0.20 2.19 7.27 -39.28 -0.29 1.91 16 26 F -0.11 -1.27 16.75 2.25 0.04 -1.24 16 27 H 0.08 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.43 4.37 8.30 -40.82 -0.34 4.03 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 34 H 0.10 1.52 5.35 -51.93 -0.28 1.24 16 35 H 0.04 0.87 7.13 -51.93 -0.37 0.50 16 36 H 0.04 1.02 6.80 -51.93 -0.35 0.67 16 37 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.17 1.95 6.30 -52.48 -0.33 1.62 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -31.32 351.31 -6.10 -37.41 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -3.79 Total: 1.65 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -1.04 Total: 8.80 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.19 Total: -44.90 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.15 Total: -18.24 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.08 Total: -2.36 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Atomic # 16 Polarization: -1.16 SS G_CDS: -2.31 Total: -3.47 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.32 -6.10 -37.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283364142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.593 kcal (2) G-P(sol) polarization free energy of solvation -31.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds