Wall clock time and date at job start Wed Apr 1 2020 03:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81408 * 1 3 3 C 1.76195 * 103.00215 * 2 1 4 4 C 1.39075 * 120.01862 * 89.99848 * 3 2 1 5 5 F 1.35103 * 120.00497 * 359.97438 * 4 3 2 6 6 C 1.38217 * 119.98521 * 180.02562 * 4 3 2 7 7 C 1.38940 * 120.01644 * 0.02620 * 6 4 3 8 8 N 1.39854 * 119.98424 * 179.97438 * 7 6 4 9 9 C 1.34776 * 119.99814 * 144.06659 * 8 7 6 10 10 O 1.21391 * 119.99983 * 4.65148 * 9 8 7 11 11 C 1.49316 * 119.99844 * 184.37654 * 9 8 7 12 12 O 1.21366 * 120.00073 * 354.52346 * 11 9 8 13 13 N 1.34772 * 119.99957 * 174.51878 * 11 9 8 14 14 C 1.46496 * 120.00246 * 3.44702 * 13 11 9 15 15 C 1.46497 * 120.00102 * 183.44352 * 13 11 9 16 16 C 1.50708 * 109.47198 * 90.00399 * 15 13 11 17 17 H 1.07996 * 119.99938 * 359.97438 * 16 15 13 18 18 C 1.37877 * 120.00016 * 180.02562 * 16 15 13 19 19 N 1.31519 * 119.99450 * 179.97438 * 18 16 15 20 20 Si 1.86795 * 120.00085 * 359.97438 * 18 16 15 21 21 H 1.48505 * 109.47108 * 90.00414 * 20 18 16 22 22 H 1.48503 * 109.47097 * 210.00279 * 20 18 16 23 23 H 1.48501 * 109.47358 * 330.00079 * 20 18 16 24 24 C 1.38937 * 120.02990 * 0.23256 * 7 6 4 25 25 C 1.38221 * 120.01918 * 359.48474 * 24 7 6 26 26 F 1.35096 * 120.00936 * 180.28393 * 25 24 7 27 27 H 1.09000 * 109.46796 * 60.00072 * 1 2 3 28 28 H 1.08994 * 109.46993 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47049 * 300.00153 * 1 2 3 30 30 H 1.07996 * 119.99194 * 179.97438 * 6 4 3 31 31 H 0.96998 * 119.99900 * 324.07259 * 8 7 6 32 32 H 1.09000 * 109.47279 * 84.18871 * 14 13 11 33 33 H 1.09000 * 109.47612 * 204.19659 * 14 13 11 34 34 H 1.09006 * 109.47121 * 324.19158 * 14 13 11 35 35 H 1.09001 * 109.47708 * 209.99816 * 15 13 11 36 36 H 1.09003 * 109.47722 * 330.00658 * 15 13 11 37 37 H 0.97003 * 119.99109 * 179.97438 * 19 18 16 38 38 H 1.08004 * 119.98685 * 179.72855 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 2.3670 2.3947 1.2042 5 9 2.2146 1.7371 2.3745 6 6 2.6775 3.7416 1.2034 7 6 2.8326 4.4183 -0.0001 8 7 3.1462 5.7813 -0.0001 9 6 3.9645 6.2844 -0.9455 10 8 4.3616 5.5733 -1.8456 11 6 4.3775 7.7182 -0.8892 12 8 3.8994 8.4550 -0.0517 13 7 5.2814 8.1941 -1.7684 14 6 5.8021 7.3250 -2.8264 15 6 5.7431 9.5807 -1.6660 16 6 6.9550 9.6419 -0.7722 17 1 7.3421 8.7385 -0.3248 18 6 7.5687 10.8515 -0.5249 19 7 8.6259 10.9050 0.2556 20 14 6.8985 12.4143 -1.2981 21 1 5.8912 13.0223 -0.3921 22 1 8.0103 13.3741 -1.5176 23 1 6.2615 12.0889 -2.5995 24 6 2.6711 3.7430 -1.2034 25 6 2.3664 2.3948 -1.2043 26 9 2.2151 1.7370 -2.3745 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 2.7986 4.2682 2.1384 31 1 2.7749 6.3644 0.6803 32 1 5.1140 7.3294 -3.6718 33 1 6.7771 7.6899 -3.1495 34 1 5.9027 6.3087 -2.4452 35 1 6.0040 9.9510 -2.6575 36 1 4.9495 10.1979 -1.2448 37 1 9.0579 11.7559 0.4293 38 1 2.7876 4.2707 -2.1385 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283364142.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:06 Heat of formation + Delta-G solvation = -119.942753 kcal Electronic energy + Delta-G solvation = -26971.825990 eV Core-core repulsion = 22577.372643 eV Total energy + Delta-G solvation = -4394.453346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.079 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.25565 -50.21020 -42.38574 -40.52237 -39.19057 -37.25263 -35.89156 -34.65655 -31.71019 -31.42946 -30.67371 -29.74282 -27.88613 -26.54756 -24.77229 -24.33455 -22.99955 -21.26671 -19.87094 -19.19530 -19.08165 -18.88862 -18.31040 -17.86574 -17.40526 -17.20370 -17.03371 -16.81733 -16.51030 -16.50325 -16.21306 -16.16363 -15.34399 -15.22478 -14.99171 -14.43842 -14.40795 -14.30527 -14.11687 -13.99301 -13.75859 -13.66711 -13.53506 -13.23575 -13.17181 -13.03653 -12.51092 -12.35206 -12.06823 -11.91979 -11.75254 -11.25800 -10.83892 -10.55356 -10.04183 -9.75160 -9.58464 -8.92549 -8.34811 -6.42319 -0.77804 -0.29671 0.22781 0.43789 0.98660 1.37342 1.39606 1.45243 1.48514 1.91615 2.14954 2.27964 2.31533 2.67039 2.98850 3.01674 3.12701 3.43815 3.67727 3.82220 4.25426 4.27443 4.33680 4.38175 4.43510 4.51710 4.60922 4.67285 4.75273 4.81170 4.83042 4.85250 5.10567 5.30878 5.38499 5.41833 5.69155 6.13074 6.25919 6.47227 6.59666 6.84688 7.22117 8.81644 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.026213 B = 0.002309 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.933900 B =12121.890673 C =12613.227883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.151 6.151 3 C -0.221 4.221 4 C 0.191 3.809 5 F -0.111 7.111 6 C -0.179 4.179 7 C 0.227 3.773 8 N -0.635 5.635 9 C 0.526 3.474 10 O -0.494 6.494 11 C 0.494 3.506 12 O -0.549 6.549 13 N -0.566 5.566 14 C 0.067 3.933 15 C 0.219 3.781 16 C -0.543 4.543 17 H 0.030 0.970 18 C 0.014 3.986 19 N -0.942 5.942 20 Si 0.948 3.052 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.235 1.235 24 C -0.176 4.176 25 C 0.187 3.813 26 F -0.115 7.115 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.087 0.913 30 H 0.179 0.821 31 H 0.439 0.561 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.037 0.963 37 H 0.270 0.730 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.705 -18.610 -2.605 26.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S 0.080 5.920 3 C -0.334 4.334 4 C 0.168 3.832 5 F -0.089 7.089 6 C -0.202 4.202 7 C 0.131 3.869 8 N -0.283 5.283 9 C 0.309 3.691 10 O -0.367 6.367 11 C 0.276 3.724 12 O -0.428 6.428 13 N -0.296 5.296 14 C -0.075 4.075 15 C 0.098 3.902 16 C -0.581 4.581 17 H 0.048 0.952 18 C -0.185 4.185 19 N -0.582 5.582 20 Si 0.770 3.230 21 H -0.196 1.196 22 H -0.204 1.204 23 H -0.158 1.158 24 C -0.198 4.198 25 C 0.164 3.836 26 F -0.093 7.093 27 H 0.103 0.897 28 H 0.146 0.854 29 H 0.106 0.894 30 H 0.197 0.803 31 H 0.281 0.719 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.079 0.921 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.830 -19.515 -2.785 26.580 hybrid contribution -0.502 1.922 0.391 2.024 sum -18.332 -17.593 -2.394 25.521 Atomic orbital electron populations 1.23728 0.91534 1.08318 1.06009 1.85707 1.10042 0.98823 1.97427 1.21792 1.17410 1.00713 0.93523 1.16926 0.96424 0.89343 0.80528 1.91597 1.92203 1.80705 1.44420 1.21043 1.07134 0.92488 0.99495 1.17130 0.93851 0.83159 0.92739 1.43116 1.45849 1.07416 1.31907 1.20185 0.78639 0.88204 0.82106 1.90688 1.52346 1.60455 1.33251 1.19915 0.81821 0.87966 0.82720 1.90733 1.55981 1.59181 1.36919 1.47852 1.38699 1.14078 1.29002 1.22441 0.99917 0.95395 0.89714 1.19653 0.94018 0.78695 0.97883 1.21456 1.12214 0.94533 1.29943 0.95159 1.25844 0.94683 1.02855 0.95081 1.70048 1.22139 1.27527 1.38444 0.85712 0.78463 0.78266 0.80533 1.19583 1.20399 1.15821 1.21235 1.05320 0.93049 1.00247 1.17058 0.96482 0.89326 0.80708 1.91576 1.92245 1.80673 1.44809 0.89705 0.85446 0.89439 0.80350 0.71943 0.90204 0.91018 0.88462 0.92153 0.94482 0.92126 0.82290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 10.72 113.37 1.22 -0.26 16 2 S -0.15 -2.87 21.51 -56.49 -1.22 -4.09 16 3 C -0.22 -4.51 5.71 22.67 0.13 -4.38 16 4 C 0.19 3.59 7.27 22.47 0.16 3.76 16 5 F -0.11 -2.13 16.75 44.97 0.75 -1.37 16 6 C -0.18 -3.02 9.94 22.43 0.22 -2.80 16 7 C 0.23 4.54 6.28 38.20 0.24 4.78 16 8 N -0.63 -13.99 5.32 -304.75 -1.62 -15.61 16 9 C 0.53 15.13 7.61 87.23 0.66 15.79 16 10 O -0.49 -14.44 10.63 -3.37 -0.04 -14.48 16 11 C 0.49 18.27 7.73 87.23 0.67 18.94 16 12 O -0.55 -22.96 16.04 -3.30 -0.05 -23.01 16 13 N -0.57 -22.06 2.86 -852.88 -2.44 -24.50 16 14 C 0.07 2.08 9.55 127.77 1.22 3.31 16 15 C 0.22 9.90 4.23 85.64 0.36 10.26 16 16 C -0.54 -30.34 9.94 25.60 0.25 -30.08 16 17 H 0.03 1.91 8.06 -2.91 -0.02 1.89 16 18 C 0.01 0.79 5.47 84.65 0.46 1.26 16 19 N -0.94 -57.49 13.96 21.45 0.30 -57.19 16 20 Si 0.95 41.75 27.47 68.60 1.88 43.63 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.24 -9.16 6.54 99.48 0.65 -8.51 16 24 C -0.18 -3.76 8.66 22.43 0.19 -3.56 16 25 C 0.19 3.99 7.27 22.47 0.16 4.15 16 26 F -0.11 -2.56 16.75 44.97 0.75 -1.81 16 27 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.44 8.26 8.30 -92.71 -0.77 7.49 16 32 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.07 2.26 8.03 -2.39 -0.02 2.24 16 34 H 0.10 3.01 5.35 -2.52 -0.01 3.00 16 35 H 0.06 2.49 7.13 -2.39 -0.02 2.47 16 36 H 0.04 1.73 6.80 -2.39 -0.02 1.71 16 37 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 38 H 0.16 3.59 6.30 -2.91 -0.02 3.58 16 Total: -1.00 -68.95 351.31 4.61 -64.34 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.32 Total: 12.92 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 5.97 Total: 21.16 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -3.76 Total: -97.30 kcal Atomic # 8 Polarization: -37.40 SS G_CDS: -0.09 Total: -37.49 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 1.51 Total: -3.18 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.88 Total: 43.63 kcal Atomic # 16 Polarization: -2.87 SS G_CDS: -1.22 Total: -4.09 kcal Total: -68.95 4.61 -64.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283364142.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.598 kcal (2) G-P(sol) polarization free energy of solvation -68.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds