Wall clock time and date at job start Wed Apr 1 2020 02:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47051 * 2 1 4 4 C 1.50694 * 109.47463 * 119.99790 * 2 1 3 5 5 H 1.08005 * 120.00262 * 114.36818 * 4 2 1 6 6 C 1.37873 * 120.00135 * 294.37379 * 4 2 1 7 7 N 1.31515 * 120.00376 * 157.14988 * 6 4 2 8 8 Si 1.86801 * 120.00145 * 337.14712 * 6 4 2 9 9 H 1.48497 * 109.47463 * 180.02562 * 8 6 4 10 10 H 1.48508 * 109.46973 * 300.00527 * 8 6 4 11 11 H 1.48496 * 109.47085 * 59.99767 * 8 6 4 12 12 N 1.46500 * 109.47246 * 240.00207 * 2 1 3 13 13 C 1.46496 * 119.99917 * 299.99698 * 12 2 1 14 14 S 1.65603 * 120.00390 * 119.99778 * 12 2 1 15 15 O 1.42095 * 106.40428 * 203.54131 * 14 12 2 16 16 O 1.42108 * 106.39827 * 336.46248 * 14 12 2 17 17 N 1.65601 * 107.21977 * 89.99587 * 14 12 2 18 18 C 1.46635 * 126.56537 * 269.69250 * 17 14 12 19 19 C 1.50788 * 107.69698 * 179.84702 * 18 17 14 20 20 C 1.38458 * 131.19106 * 180.10271 * 19 18 17 21 21 C 1.38154 * 120.12651 * 180.35359 * 20 19 18 22 22 C 1.38233 * 119.97751 * 359.97438 * 21 20 19 23 23 C 1.38263 * 119.94694 * 0.02562 * 22 21 20 24 24 Cl 1.73603 * 119.95767 * 180.02562 * 23 22 21 25 25 C 1.38046 * 108.86147 * 0.42392 * 19 18 17 26 26 C 1.46643 * 126.56187 * 89.99940 * 17 14 12 27 27 H 1.09003 * 109.47120 * 293.28714 * 1 2 3 28 28 H 1.09000 * 109.47429 * 53.29567 * 1 2 3 29 29 H 1.09008 * 109.46649 * 173.29136 * 1 2 3 30 30 H 0.97004 * 119.99994 * 354.92506 * 7 6 4 31 31 H 1.09003 * 109.47479 * 90.00138 * 13 12 2 32 32 H 1.09006 * 109.47359 * 209.99948 * 13 12 2 33 33 H 1.09003 * 109.47063 * 329.99619 * 13 12 2 34 34 H 1.08993 * 109.81615 * 299.54302 * 18 17 14 35 35 H 1.09004 * 109.81149 * 60.45472 * 18 17 14 36 36 H 1.07994 * 119.93502 * 0.37509 * 20 19 18 37 37 H 1.07998 * 120.00797 * 179.97438 * 21 20 19 38 38 H 1.08000 * 120.02481 * 179.97438 * 22 21 20 39 39 H 1.08994 * 109.81140 * 299.54870 * 26 17 14 40 40 H 1.09000 * 109.81052 * 60.38938 * 26 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.5763 -1.6384 1.1340 6 6 1.7977 -0.1755 2.4793 7 7 1.8131 -0.9519 3.5407 8 14 1.4577 1.6520 2.6640 9 1 1.2401 1.9727 4.0975 10 1 2.6189 2.4254 2.1549 11 1 0.2447 2.0109 1.8863 12 7 2.0183 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4280 14 16 2.9704 0.1142 -2.2863 15 8 2.8227 -0.5645 -3.5259 16 8 2.6903 1.4974 -2.1193 17 7 4.5438 -0.1040 -1.8181 18 6 5.3132 0.7559 -0.9133 19 6 6.6927 0.1620 -0.7792 20 6 7.7961 0.5742 -0.0514 21 6 8.9704 -0.1520 -0.1012 22 6 9.0446 -1.2927 -0.8784 23 6 7.9434 -1.7053 -1.6056 24 17 8.0360 -3.1382 -2.5812 25 6 6.7658 -0.9767 -1.5561 26 6 5.4362 -1.1908 -2.2339 27 1 -0.3633 0.4063 0.9440 28 1 -0.3634 0.6142 -0.8239 29 1 -0.3633 -1.0207 -0.1201 30 1 1.9162 -1.9111 3.4386 31 1 0.7376 -2.1444 -1.9994 32 1 2.4630 -2.5818 -1.9864 33 1 1.5297 -2.5968 -0.4708 34 1 5.3803 1.7618 -1.3275 35 1 4.8312 0.7891 0.0638 36 1 7.7386 1.4649 0.5566 37 1 9.8300 0.1715 0.4670 38 1 9.9622 -1.8608 -0.9182 39 1 5.0168 -2.1499 -1.9300 40 1 5.5644 -1.1700 -3.3161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000287596167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:23 Heat of formation + Delta-G solvation = -41.195408 kcal Electronic energy + Delta-G solvation = -26697.538840 eV Core-core repulsion = 22858.296915 eV Total energy + Delta-G solvation = -3839.241925 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.38767 -36.96231 -36.94213 -36.40179 -36.22629 -35.49547 -32.66447 -31.41557 -30.71222 -29.85445 -27.83042 -25.78566 -24.72762 -24.55481 -21.69886 -21.66775 -20.65488 -18.71047 -17.63387 -17.43631 -17.12645 -16.55747 -16.17302 -15.48329 -15.24163 -15.20479 -14.43306 -14.03946 -13.79509 -13.39542 -13.29576 -13.18400 -12.97443 -12.88237 -12.77590 -12.16302 -12.06028 -11.93036 -11.83513 -11.76782 -11.70781 -11.60844 -11.54463 -11.38627 -11.32880 -10.95740 -10.83874 -10.53015 -10.11352 -9.86995 -9.51939 -9.29758 -8.81646 -8.54529 -8.40471 -8.12871 -6.57867 -4.20780 0.89467 0.96712 1.04223 1.97290 3.18810 3.33647 3.39289 3.39777 3.54185 3.87865 3.99936 4.36453 4.39495 4.73755 4.76654 5.03712 5.06745 5.12732 5.21354 5.38338 5.44761 5.51168 5.59317 5.68925 5.80593 5.93608 6.01058 6.04135 6.14095 6.14644 6.17075 6.34903 6.41571 6.47986 6.56684 6.57765 6.62239 6.95699 7.24625 7.41024 7.90158 8.25959 8.78752 9.45197 10.77251 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.012020 B = 0.004595 C = 0.003978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.888192 B = 6092.333027 C = 7037.848905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.245 3.755 3 H 0.046 0.954 4 C -0.617 4.617 5 H 0.066 0.934 6 C 0.044 3.956 7 N -0.891 5.891 8 Si 1.022 2.978 9 H -0.282 1.282 10 H -0.279 1.279 11 H -0.273 1.273 12 N -0.981 5.981 13 C 0.106 3.894 14 S 2.800 3.200 15 O -0.983 6.983 16 O -0.972 6.972 17 N -1.016 6.016 18 C 0.163 3.837 19 C -0.076 4.076 20 C -0.093 4.093 21 C -0.103 4.103 22 C -0.112 4.112 23 C -0.013 4.013 24 Cl -0.071 7.071 25 C -0.093 4.093 26 C 0.172 3.828 27 H 0.061 0.939 28 H 0.027 0.973 29 H 0.050 0.950 30 H 0.270 0.730 31 H 0.046 0.954 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.373 -0.196 -8.633 15.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.140 3.860 3 H 0.064 0.936 4 C -0.656 4.656 5 H 0.084 0.916 6 C -0.164 4.164 7 N -0.523 5.523 8 Si 0.849 3.151 9 H -0.207 1.207 10 H -0.205 1.205 11 H -0.199 1.199 12 N -0.823 5.823 13 C -0.040 4.040 14 S 2.810 3.190 15 O -0.967 6.967 16 O -0.956 6.956 17 N -0.852 5.852 18 C 0.037 3.963 19 C -0.077 4.077 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.040 4.040 24 Cl -0.042 7.042 25 C -0.096 4.096 26 C 0.046 3.954 27 H 0.080 0.920 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.116 0.884 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.099 0.901 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.693 1.362 -8.393 14.457 hybrid contribution 0.476 -1.746 -0.730 1.951 sum 12.169 -0.384 -9.122 15.213 Atomic orbital electron populations 1.22386 0.98215 1.00541 1.00111 1.18997 0.91496 0.92701 0.82768 0.93598 1.22128 1.41329 1.11425 0.90697 0.91614 1.25590 0.93272 1.05528 0.91976 1.70853 1.43150 1.06485 1.31825 0.84358 0.77944 0.76229 0.76565 1.20745 1.20453 1.19873 1.57608 1.63660 1.21700 1.39365 1.21234 0.99110 0.81548 1.02108 1.01439 0.71058 0.73435 0.73066 1.93562 1.85366 1.76319 1.41470 1.93581 1.83177 1.31958 1.86866 1.59032 1.28989 1.35993 1.61211 1.20052 0.87394 0.93429 0.95397 1.20438 0.95561 0.95327 0.96406 1.20653 0.91420 1.00519 0.98542 1.21016 0.97983 0.94505 0.98665 1.20944 0.97353 0.97668 0.97091 1.20294 0.94447 0.90705 0.98598 1.98371 1.98487 1.37730 1.69644 1.20147 0.94228 0.95937 0.99240 1.19867 0.85982 0.90811 0.98702 0.91989 0.95396 0.93113 0.91955 0.93536 0.93023 0.89967 0.89566 0.88448 0.84789 0.84566 0.84592 0.90079 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.02 37.16 0.34 -2.93 16 2 C 0.24 5.56 2.22 -69.09 -0.15 5.41 16 3 H 0.05 1.08 5.49 -51.93 -0.29 0.80 16 4 C -0.62 -15.67 8.30 -34.44 -0.29 -15.95 16 5 H 0.07 1.78 7.38 -52.48 -0.39 1.40 16 6 C 0.04 1.18 5.20 -17.82 -0.09 1.08 16 7 N -0.89 -25.40 13.70 55.43 0.76 -24.64 16 8 Si 1.02 23.61 26.44 -169.99 -4.49 19.11 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.27 -5.92 6.12 56.52 0.35 -5.58 16 12 N -0.98 -19.70 3.12 -115.85 -0.36 -20.06 16 13 C 0.11 1.87 9.15 59.84 0.55 2.41 16 14 S 2.80 53.81 6.33 -107.50 -0.68 53.13 16 15 O -0.98 -19.56 16.84 -57.17 -0.96 -20.52 16 16 O -0.97 -20.73 16.33 -57.17 -0.93 -21.67 16 17 N -1.02 -17.07 3.77 -116.65 -0.44 -17.51 16 18 C 0.16 2.52 7.03 -5.08 -0.04 2.48 16 19 C -0.08 -1.04 6.22 -104.57 -0.65 -1.69 16 20 C -0.09 -1.04 10.05 -39.53 -0.40 -1.44 16 21 C -0.10 -0.99 10.04 -39.61 -0.40 -1.39 16 22 C -0.11 -1.15 9.83 -39.57 -0.39 -1.53 16 23 C -0.01 -0.16 6.32 -39.45 -0.25 -0.41 16 24 Cl -0.07 -0.82 28.76 -51.86 -1.49 -2.31 16 25 C -0.09 -1.30 6.11 -104.54 -0.64 -1.94 16 26 C 0.17 2.55 6.79 -5.08 -0.03 2.52 16 27 H 0.06 1.36 5.44 -51.93 -0.28 1.07 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 1.02 7.46 -51.92 -0.39 0.64 16 30 H 0.27 7.69 8.73 -40.82 -0.36 7.33 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.80 7.79 -51.93 -0.40 0.40 16 33 H 0.08 1.52 6.92 -51.93 -0.36 1.16 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -30.48 354.12 -10.83 -41.31 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.12 Total: 1.19 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -2.44 Total: -13.38 kcal Atomic # 7 Polarization: -62.16 SS G_CDS: -0.04 Total: -62.20 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -1.90 Total: -42.19 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -4.49 Total: 19.11 kcal Atomic # 16 Polarization: 53.81 SS G_CDS: -0.68 Total: 53.13 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.49 Total: -2.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.48 -10.83 -41.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000287596167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.110 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds