Wall clock time and date at job start Wed Apr 1 2020 02:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.46926 * 2 1 4 4 C 1.46506 * 119.99763 * 274.05962 * 3 2 1 5 5 C 1.50709 * 109.46782 * 280.92808 * 4 3 2 6 6 H 1.07994 * 120.00006 * 3.26510 * 5 4 3 7 7 C 1.37876 * 119.99561 * 183.25759 * 5 4 3 8 8 N 1.31513 * 120.00398 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99765 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47303 * 59.99811 * 9 7 5 11 11 H 1.48497 * 109.47450 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47030 * 299.99869 * 9 7 5 13 13 S 1.65599 * 120.00660 * 94.05639 * 3 2 1 14 14 O 1.42103 * 106.40015 * 336.47288 * 13 3 2 15 15 O 1.42097 * 106.40641 * 203.54979 * 13 3 2 16 16 N 1.65601 * 107.21749 * 90.00638 * 13 3 2 17 17 C 1.46507 * 119.99942 * 65.60280 * 16 13 3 18 18 C 1.50699 * 109.46986 * 164.33154 * 17 16 13 19 19 C 1.34330 * 125.81044 * 95.00521 * 18 17 16 20 20 N 1.38920 * 107.12474 * 179.73628 * 19 18 17 21 21 C 1.37488 * 139.53466 * 180.21431 * 20 19 18 22 22 C 1.30910 * 116.31927 * 180.02562 * 21 20 19 23 23 S 1.75778 * 109.82105 * 359.97438 * 22 21 20 24 24 C 1.35145 * 106.52756 * 0.24158 * 20 19 18 25 25 N 1.32351 * 108.82605 * 359.97438 * 24 20 19 26 26 H 1.08996 * 109.46868 * 65.05869 * 1 2 3 27 27 H 1.09002 * 109.46785 * 185.05341 * 1 2 3 28 28 H 1.08994 * 109.47502 * 305.05280 * 1 2 3 29 29 H 1.09000 * 109.47300 * 239.99927 * 2 1 3 30 30 H 1.09005 * 109.46917 * 119.99672 * 2 1 3 31 31 H 1.08998 * 109.47257 * 40.92933 * 4 3 2 32 32 H 1.08998 * 109.47384 * 160.93529 * 4 3 2 33 33 H 0.96998 * 119.99911 * 179.97438 * 8 7 5 34 34 H 0.97002 * 120.00251 * 245.60798 * 16 13 3 35 35 H 1.08998 * 109.46476 * 44.32989 * 17 16 13 36 36 H 1.09003 * 109.46881 * 284.33094 * 17 16 13 37 37 H 1.08006 * 126.43651 * 359.97438 * 19 18 17 38 38 H 1.07998 * 121.84338 * 0.04715 * 21 20 19 39 39 H 1.08004 * 125.08864 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1777 2.1017 -1.2656 5 6 3.4577 1.6681 -1.9326 6 1 4.0626 0.8920 -1.4875 7 6 3.8564 2.2623 -3.1112 8 7 3.1201 3.2077 -3.6531 9 14 5.4426 1.7244 -3.9384 10 1 5.3606 0.2802 -4.2744 11 1 5.6438 2.5108 -5.1819 12 1 6.5841 1.9542 -3.0167 13 16 2.3900 2.1282 1.4304 14 8 1.6492 1.4549 2.4390 15 8 2.2868 3.5253 1.1923 16 7 3.9876 1.8236 1.7419 17 6 5.0228 2.3685 0.8598 18 6 6.3617 2.2872 1.5466 19 6 7.2591 1.2978 1.4045 20 7 8.3496 1.6167 2.2039 21 6 9.5800 1.1077 2.5463 22 6 10.2874 1.8169 3.3892 23 16 9.4008 3.2663 3.8395 24 6 8.0567 2.7925 2.8025 25 7 6.8581 3.1877 2.4039 26 1 -0.3633 0.4333 -0.9318 27 1 -0.3633 -1.0237 0.0905 28 1 -0.3634 0.5902 0.8412 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 1.3341 1.8795 -1.9190 32 1 2.2144 3.1736 -1.0714 33 1 3.4008 3.6259 -4.4820 34 1 4.2382 1.2842 2.5082 35 1 4.7941 3.4095 0.6313 36 1 5.0529 1.7917 -0.0646 37 1 7.1543 0.4212 0.7823 38 1 9.9431 0.1744 2.1420 39 1 11.2689 1.5511 3.7533 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336884303.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:23 Heat of formation + Delta-G solvation = 26.619608 kcal Electronic energy + Delta-G solvation = -26061.853002 eV Core-core repulsion = 22259.888214 eV Total energy + Delta-G solvation = -3801.964788 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.71384 -37.08686 -36.57133 -36.00637 -35.12964 -34.49379 -32.72132 -30.86938 -29.90880 -29.59226 -26.64442 -25.50444 -24.20191 -23.14290 -21.68174 -20.91641 -20.55294 -18.76939 -18.50926 -17.10551 -16.80510 -16.48421 -16.18735 -16.00574 -15.60301 -15.17903 -14.82352 -14.58376 -14.25721 -13.78534 -13.49676 -13.31982 -12.95382 -12.88087 -12.56726 -12.06336 -11.94780 -11.92463 -11.65079 -11.51309 -11.43178 -11.31619 -11.24984 -11.05323 -10.97851 -10.63444 -10.49749 -10.37926 -10.16087 -10.01558 -9.81394 -9.00245 -8.92439 -8.52073 -8.04201 -7.85116 -6.13161 -4.20310 0.70534 0.71791 1.33892 1.41230 2.06458 2.40210 2.77373 3.22141 3.27783 3.29687 3.70890 4.22876 4.26598 4.32509 4.47867 4.78878 4.92896 5.11485 5.20345 5.22606 5.37435 5.46262 5.76440 5.80925 5.88047 5.93926 6.07924 6.15865 6.35124 6.40232 6.52084 6.70107 6.72409 6.74214 7.32252 7.39667 7.48402 7.69948 7.71229 7.84183 8.14184 8.83582 9.45069 10.94592 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.010738 B = 0.004099 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.899113 B = 6829.358311 C = 8522.337959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.992 5.992 4 C 0.242 3.758 5 C -0.542 4.542 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.889 3.111 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.275 1.275 13 S 2.787 3.213 14 O -1.000 7.000 15 O -0.977 6.977 16 N -1.125 6.125 17 C 0.200 3.800 18 C 0.049 3.951 19 C -0.033 4.033 20 N -0.412 5.412 21 C 0.056 3.944 22 C -0.229 4.229 23 S 0.180 5.820 24 C 0.131 3.869 25 N -0.439 5.439 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.035 0.965 32 H 0.055 0.945 33 H 0.266 0.734 34 H 0.407 0.593 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.188 0.812 38 H 0.181 0.819 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.861 -7.369 11.446 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.834 5.834 4 C 0.120 3.880 5 C -0.582 4.582 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.200 1.200 13 S 2.795 3.205 14 O -0.984 6.984 15 O -0.961 6.961 16 N -0.883 5.883 17 C 0.073 3.927 18 C -0.082 4.082 19 C -0.166 4.166 20 N -0.092 5.092 21 C -0.074 4.074 22 C -0.367 4.367 23 S 0.429 5.571 24 C -0.235 4.235 25 N -0.162 5.162 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.239 0.761 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.206 0.794 38 H 0.198 0.802 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 12.073 -4.835 12.693 18.173 hybrid contribution 1.581 -2.689 -1.725 3.564 sum 13.654 -7.524 10.968 19.062 Atomic orbital electron populations 1.22202 0.97041 1.01268 1.02361 1.20954 0.93568 0.82896 1.02082 1.57752 1.78696 1.23040 1.23889 1.19221 0.97146 0.92647 0.78957 1.21480 1.07443 1.21400 1.07843 0.91797 1.24940 0.96973 0.94745 0.96979 1.69916 1.37971 1.24682 1.19654 0.86718 0.83859 0.78642 0.79174 1.20246 1.21199 1.19995 1.01710 0.72484 0.73714 0.72640 1.93544 1.69678 1.76531 1.58629 1.93583 1.85791 1.31124 1.85556 1.55983 1.25034 1.68212 1.39064 1.19764 0.79810 1.01955 0.91171 1.20926 0.97692 0.91283 0.98331 1.22742 0.86574 1.04499 1.02768 1.43923 1.13440 1.18318 1.33531 1.20390 0.84510 1.01886 1.00586 1.25062 1.06010 1.00019 1.05594 1.84755 1.03820 1.22158 1.46364 1.26275 1.00755 0.90773 1.05740 1.70583 1.04146 1.27955 1.13537 0.92152 0.92464 0.92664 0.90080 0.92032 0.94698 0.92668 0.92451 0.76148 0.88541 0.87340 0.79449 0.80197 0.78817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 2 C 0.13 2.24 6.01 -4.04 -0.02 2.21 16 3 N -0.99 -19.93 2.84 -115.65 -0.33 -20.26 16 4 C 0.24 5.79 5.48 -5.19 -0.03 5.76 16 5 C -0.54 -13.24 7.94 -34.44 -0.27 -13.51 16 6 H 0.06 1.46 6.74 -52.49 -0.35 1.10 16 7 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.88 -24.52 13.29 55.43 0.74 -23.79 16 9 Si 0.89 19.67 29.54 -169.99 -5.02 14.65 16 10 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 12 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 13 S 2.79 56.14 6.11 -107.50 -0.66 55.48 16 14 O -1.00 -20.71 17.09 -57.17 -0.98 -21.68 16 15 O -0.98 -23.33 16.09 -57.17 -0.92 -24.25 16 16 N -1.12 -19.42 6.04 -11.65 -0.07 -19.49 16 17 C 0.20 3.61 6.69 -5.19 -0.03 3.58 16 18 C 0.05 0.83 6.46 -83.08 -0.54 0.29 16 19 C -0.03 -0.45 11.93 -15.71 -0.19 -0.64 16 20 N -0.41 -5.22 3.19 -63.77 -0.20 -5.42 16 21 C 0.06 0.46 11.26 -16.71 -0.19 0.28 16 22 C -0.23 -1.57 11.11 29.04 0.32 -1.25 16 23 S 0.18 1.80 23.37 -107.50 -2.51 -0.72 16 24 C 0.13 1.92 8.93 -88.72 -0.79 1.13 16 25 N -0.44 -7.82 11.32 -9.77 -0.11 -7.93 16 26 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 29 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 30 H 0.06 0.93 7.64 -51.93 -0.40 0.54 16 31 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.47 6.83 -51.93 -0.35 1.12 16 33 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 34 H 0.41 6.08 8.65 -34.47 -0.30 5.78 16 35 H 0.10 1.97 7.72 -51.93 -0.40 1.57 16 36 H 0.11 1.98 5.58 -51.93 -0.29 1.69 16 37 H 0.19 2.04 8.06 -52.48 -0.42 1.61 16 38 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.19 0.56 8.06 -52.48 -0.42 0.14 16 LS Contribution 357.94 15.07 5.39 5.39 Total: -1.00 -33.80 357.94 -10.73 -44.54 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -4.61 Total: 6.28 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -1.46 Total: -2.81 kcal Atomic # 7 Polarization: -76.91 SS G_CDS: 0.02 Total: -76.89 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -1.90 Total: -45.93 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 16 Polarization: 57.93 SS G_CDS: -3.17 Total: 54.76 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.80 -10.73 -44.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336884303.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.158 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds