Wall clock time and date at job start Wed Apr 1 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 120.00143 * 2 1 4 4 C 1.50702 * 109.47420 * 274.99943 * 3 2 1 5 5 H 1.07999 * 119.99889 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00176 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00098 * 180.02562 * 6 4 3 8 8 Si 1.86806 * 119.99880 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.46717 * 89.99960 * 8 6 4 10 10 H 1.48499 * 109.47056 * 209.99346 * 8 6 4 11 11 H 1.48499 * 109.47252 * 330.00286 * 8 6 4 12 12 S 1.65608 * 119.99904 * 180.02562 * 2 1 3 13 13 O 1.42099 * 106.40241 * 23.53644 * 12 2 1 14 14 O 1.42097 * 106.39895 * 156.45719 * 12 2 1 15 15 N 1.65596 * 107.21450 * 269.99855 * 12 2 1 16 16 C 1.47233 * 121.34164 * 90.00276 * 15 12 2 17 17 C 1.52782 * 107.90438 * 115.75358 * 16 15 12 18 18 C 1.50609 * 110.85480 * 47.50130 * 17 16 15 19 19 C 1.38957 * 117.61575 * 159.93956 * 18 17 16 20 20 C 1.38017 * 120.57733 * 179.53893 * 19 18 17 21 21 Cl 1.73602 * 120.10375 * 179.90299 * 20 19 18 22 22 C 1.38390 * 119.79672 * 359.92744 * 20 19 18 23 23 C 1.37931 * 119.70149 * 0.22822 * 22 20 19 24 24 C 1.37684 * 122.85718 * 339.83881 * 18 17 16 25 25 C 1.46688 * 121.33638 * 269.71931 * 15 12 2 26 26 H 1.08999 * 109.46532 * 269.99642 * 1 2 3 27 27 H 1.09000 * 109.46877 * 29.99666 * 1 2 3 28 28 H 1.09000 * 109.47251 * 149.99772 * 1 2 3 29 29 H 1.08999 * 109.47129 * 35.00313 * 3 2 1 30 30 H 1.09006 * 109.47348 * 155.00378 * 3 2 1 31 31 H 0.97000 * 119.99533 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.77471 * 235.36546 * 16 15 12 33 33 H 1.09002 * 109.77163 * 356.15714 * 16 15 12 34 34 H 1.09000 * 109.20479 * 167.84836 * 17 16 15 35 35 H 1.08992 * 109.20478 * 287.14844 * 17 16 15 36 36 H 1.08002 * 119.71270 * 359.55977 * 19 18 17 37 37 H 1.08000 * 120.14548 * 180.21222 * 22 20 19 38 38 H 1.08001 * 119.73857 * 180.02562 * 23 22 20 39 39 H 1.08997 * 109.43392 * 344.46415 * 25 15 12 40 40 H 1.08996 * 109.43817 * 104.33554 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7657 -1.4154 5 1 1.9283 1.1939 -2.2331 6 6 2.9998 2.9508 -1.6663 7 7 3.1251 3.3848 -2.9015 8 14 3.7140 3.9402 -0.2518 9 1 5.1113 3.5053 0.0006 10 1 3.7002 5.3835 -0.6007 11 1 2.8983 3.7181 0.9691 12 16 2.2930 -1.4342 -0.0006 13 8 1.4113 -2.4063 -0.5454 14 8 3.5759 -1.1566 -0.5450 15 7 2.5381 -1.8593 1.5809 16 6 1.5624 -2.6847 2.3121 17 6 2.2410 -4.0052 2.6727 18 6 3.6014 -3.7629 3.2716 19 6 4.1625 -4.7834 4.0298 20 6 5.4104 -4.6304 4.5992 21 17 6.0985 -5.9123 5.5462 22 6 6.1113 -3.4517 4.4132 23 6 5.5545 -2.4365 3.6636 24 6 4.2967 -2.5877 3.0954 25 6 3.7390 -1.4338 2.3080 26 1 -0.3632 -0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5139 29 1 1.6502 2.0042 0.5895 30 1 3.1859 1.1176 0.4343 31 1 3.5879 4.2188 -3.0779 32 1 1.2513 -2.1696 3.2209 33 1 0.6949 -2.8763 1.6806 34 1 1.6227 -4.5411 3.3929 35 1 2.3482 -4.6107 1.7728 36 1 3.6174 -5.7045 4.1746 37 1 7.0896 -3.3272 4.8533 38 1 6.1011 -1.5165 3.5177 39 1 4.4882 -1.0844 1.5976 40 1 3.4818 -0.6240 2.9906 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408338322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:23 Heat of formation + Delta-G solvation = -72.699637 kcal Electronic energy + Delta-G solvation = -26153.854044 eV Core-core repulsion = 22313.245993 eV Total energy + Delta-G solvation = -3840.608051 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.075 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.04143 -38.42750 -38.08781 -37.29211 -36.99904 -36.87987 -34.50118 -33.90407 -32.02108 -30.38110 -30.25738 -26.81338 -26.16308 -24.76851 -23.80285 -23.39544 -21.48190 -19.71915 -19.19645 -18.65833 -18.36206 -17.90604 -17.23757 -16.62696 -16.57602 -16.23333 -15.71009 -15.53375 -15.28535 -14.89338 -14.66056 -14.47006 -14.40991 -14.21871 -14.00854 -13.69169 -13.52557 -13.40534 -13.31262 -13.12769 -13.02214 -12.99311 -12.92119 -12.36652 -12.32701 -12.26621 -12.08285 -11.94193 -11.91701 -11.70086 -11.61862 -10.77495 -10.24509 -9.79064 -9.76727 -9.47558 -8.28066 -6.34635 -0.47704 0.10874 0.27233 1.13246 1.38599 1.42864 1.51420 1.96982 2.37032 2.48942 2.56218 3.05975 3.26515 3.54733 3.68248 3.87109 3.94398 4.06392 4.12855 4.20302 4.30816 4.45964 4.51873 4.55008 4.67091 4.72039 4.72633 4.82715 4.86112 4.88987 5.00469 5.06465 5.12272 5.20799 5.24270 5.33851 5.46705 5.48839 5.59193 5.80482 5.80767 6.30835 6.68585 7.28664 8.89700 Molecular weight = 344.07amu Principal moments of inertia in cm(-1) A = 0.017116 B = 0.003262 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.505374 B = 8582.614494 C = 9650.287868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.999 5.999 3 C 0.235 3.765 4 C -0.545 4.545 5 H 0.024 0.976 6 C 0.005 3.995 7 N -0.951 5.951 8 Si 0.945 3.055 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.225 1.225 12 S 2.794 3.206 13 O -1.003 7.003 14 O -1.006 7.006 15 N -1.005 6.005 16 C 0.115 3.885 17 C -0.097 4.097 18 C -0.064 4.064 19 C -0.114 4.114 20 C -0.044 4.044 21 Cl -0.071 7.071 22 C -0.115 4.115 23 C -0.105 4.105 24 C -0.094 4.094 25 C 0.151 3.849 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.267 0.733 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.151 0.849 39 H 0.090 0.910 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.305 -14.482 22.480 26.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.840 5.840 3 C 0.110 3.890 4 C -0.584 4.584 5 H 0.042 0.958 6 C -0.193 4.193 7 N -0.591 5.591 8 Si 0.766 3.234 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.147 1.147 12 S 2.804 3.196 13 O -0.987 6.987 14 O -0.990 6.990 15 N -0.846 5.846 16 C -0.009 4.009 17 C -0.136 4.136 18 C -0.065 4.065 19 C -0.132 4.132 20 C -0.071 4.071 21 Cl -0.042 7.042 22 C -0.134 4.134 23 C -0.124 4.124 24 C -0.096 4.096 25 C 0.026 3.974 26 H 0.104 0.896 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.139 0.861 35 H 0.094 0.906 36 H 0.167 0.833 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.108 0.892 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.047 -14.935 21.665 26.314 hybrid contribution 0.532 0.677 -0.184 0.880 sum 0.579 -14.258 21.481 25.789 Atomic orbital electron populations 1.21623 0.77729 1.03475 1.03021 1.57406 1.15919 1.21482 1.89225 1.19224 0.92004 0.82448 0.95305 1.21714 1.36410 1.06827 0.93448 0.95753 1.25994 0.95759 0.98650 0.98881 1.70085 1.44125 1.22886 1.21992 0.85766 0.79989 0.77444 0.80161 1.19112 1.20712 1.14697 1.01359 0.72340 0.72528 0.73376 1.93494 1.67505 1.60373 1.77315 1.93557 1.42792 1.85470 1.77144 1.58158 1.29797 1.65592 1.31035 1.21693 0.90505 0.90334 0.98340 1.20907 0.92588 0.98234 1.01839 1.19595 0.97102 0.92727 0.97046 1.21232 0.94303 1.00049 0.97659 1.20990 0.95622 0.91162 0.99310 1.98368 1.84611 1.50202 1.71068 1.21180 1.00982 0.91705 0.99506 1.21274 0.94352 1.00128 0.96621 1.19905 0.95296 0.95556 0.98861 1.20326 0.86015 0.95265 0.95759 0.89632 0.91360 0.91126 0.92431 0.94574 0.92369 0.87861 0.88284 0.86075 0.90625 0.83346 0.83196 0.83125 0.89159 0.87520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.65 10.68 127.77 1.36 4.01 16 2 N -1.00 -38.21 3.23 -543.22 -1.75 -39.96 16 3 C 0.23 10.40 4.15 85.63 0.36 10.75 16 4 C -0.54 -31.32 9.94 25.60 0.25 -31.07 16 5 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 6 C 0.00 0.27 5.47 84.65 0.46 0.73 16 7 N -0.95 -59.99 13.96 21.45 0.30 -59.69 16 8 Si 0.95 41.49 27.47 68.60 1.88 43.38 16 9 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.22 -8.36 6.54 99.48 0.65 -7.71 16 12 S 2.79 105.26 6.12 -56.49 -0.35 104.92 16 13 O -1.00 -39.70 15.50 -128.00 -1.98 -41.69 16 14 O -1.01 -47.29 15.74 -128.00 -2.01 -49.30 16 15 N -1.01 -26.40 3.32 -518.54 -1.72 -28.12 16 16 C 0.12 2.13 6.41 86.17 0.55 2.68 16 17 C -0.10 -1.61 5.87 29.75 0.17 -1.44 16 18 C -0.06 -1.24 5.76 -19.85 -0.11 -1.35 16 19 C -0.11 -1.98 9.37 22.39 0.21 -1.77 16 20 C -0.04 -0.79 6.31 22.25 0.14 -0.65 16 21 Cl -0.07 -1.18 28.96 -2.72 -0.08 -1.26 16 22 C -0.12 -1.97 9.84 22.23 0.22 -1.75 16 23 C -0.11 -1.93 9.62 22.34 0.21 -1.71 16 24 C -0.09 -1.99 5.81 -19.94 -0.12 -2.11 16 25 C 0.15 3.57 6.28 85.51 0.54 4.11 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 28 H 0.07 2.11 7.02 -2.39 -0.02 2.09 16 29 H 0.06 2.29 7.17 -2.39 -0.02 2.27 16 30 H 0.04 1.55 7.04 -2.38 -0.02 1.53 16 31 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.10 1.80 7.16 -2.39 -0.02 1.78 16 34 H 0.12 1.20 8.10 -2.39 -0.02 1.18 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.15 1.98 8.05 -2.91 -0.02 1.96 16 37 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.15 2.21 8.05 -2.91 -0.02 2.19 16 39 H 0.09 2.49 6.94 -2.39 -0.02 2.47 16 40 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -78.05 355.16 -0.46 -78.51 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.00 Total: 12.76 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: 4.25 Total: -19.55 kcal Atomic # 7 Polarization: -124.59 SS G_CDS: -3.18 Total: -127.77 kcal Atomic # 8 Polarization: -86.99 SS G_CDS: -4.00 Total: -90.99 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.88 Total: 43.38 kcal Atomic # 16 Polarization: 105.26 SS G_CDS: -0.35 Total: 104.92 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -78.05 -0.46 -78.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408338322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.814 kcal (2) G-P(sol) polarization free energy of solvation -78.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds