Wall clock time and date at job start Wed Apr 1 2020 03:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34653 * 117.00006 * 2 1 4 4 O 1.21415 * 119.99415 * 359.97438 * 3 2 1 5 5 C 1.48240 * 120.00317 * 180.02562 * 3 2 1 6 6 C 1.42300 * 126.94385 * 179.97438 * 5 3 2 7 7 C 1.35302 * 103.92034 * 179.97438 * 6 5 3 8 8 S 1.76203 * 126.66215 * 180.02562 * 7 6 5 9 9 O 1.42108 * 106.40088 * 203.52144 * 8 7 6 10 10 O 1.42096 * 106.40087 * 336.43930 * 8 7 6 11 11 N 1.65594 * 107.21748 * 89.98168 * 8 7 6 12 12 C 1.46928 * 120.62993 * 269.71616 * 11 8 7 13 13 C 1.52758 * 109.01313 * 233.58642 * 12 11 8 14 14 C 1.53045 * 109.38359 * 305.59074 * 13 12 11 15 15 C 1.50696 * 109.45284 * 181.25172 * 14 13 12 16 16 H 1.07995 * 120.00041 * 239.94438 * 15 14 13 17 17 C 1.37877 * 119.99671 * 59.93448 * 15 14 13 18 18 N 1.31512 * 120.00452 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99839 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47085 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47265 * 120.00526 * 19 17 15 22 22 H 1.48507 * 109.46945 * 240.00488 * 19 17 15 23 23 C 1.53042 * 109.53712 * 61.23394 * 14 13 12 24 24 C 1.46928 * 120.63543 * 90.00285 * 11 8 7 25 25 O 1.34014 * 106.67813 * 359.97438 * 7 6 5 26 26 N 1.20909 * 111.85784 * 0.02562 * 25 7 6 27 27 H 1.08998 * 109.47046 * 60.00428 * 1 2 3 28 28 H 1.09007 * 109.46808 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47318 * 299.99663 * 1 2 3 30 30 H 1.08001 * 128.03426 * 359.95258 * 6 5 3 31 31 H 1.09002 * 109.58838 * 353.42636 * 12 11 8 32 32 H 1.09005 * 109.58516 * 113.84757 * 12 11 8 33 33 H 1.08995 * 109.56392 * 185.55638 * 13 12 11 34 34 H 1.08996 * 109.38708 * 65.51403 * 13 12 11 35 35 H 1.09003 * 109.45777 * 301.21786 * 14 13 12 36 36 H 0.97000 * 120.00000 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.49884 * 178.68372 * 23 14 13 38 38 H 1.09003 * 109.52294 * 58.61049 * 23 14 13 39 39 H 1.09004 * 109.58643 * 246.15755 * 24 11 8 40 40 H 1.09007 * 109.58145 * 6.43545 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4019 2.2180 -0.0005 5 6 3.5437 1.2774 -0.0006 6 6 4.3382 2.4580 -0.0012 7 6 5.6095 1.9948 -0.0009 8 16 7.0819 2.9626 -0.0008 9 8 8.1039 2.1384 -0.5446 10 8 6.7309 4.2271 -0.5458 11 7 7.4910 3.2324 1.5810 12 6 6.9865 4.4141 2.2936 13 6 8.1670 5.1732 2.8966 14 6 8.9935 4.2211 3.7640 15 6 10.1411 4.9756 4.3842 16 1 11.1581 4.6744 4.1810 17 6 9.8926 6.0507 5.2109 18 7 8.6542 6.4174 5.4586 19 14 11.3151 6.9865 5.9792 20 1 12.5990 6.3792 5.5454 21 1 11.2670 8.4053 5.5437 22 1 11.2102 6.9191 7.4590 23 6 9.5399 3.0837 2.8979 24 6 8.3704 2.2980 2.2967 25 8 5.5313 0.6569 0.0003 26 7 4.3848 0.2729 0.0003 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 4.0040 3.4850 -0.0020 31 1 6.4548 5.0619 1.5965 32 1 6.3122 4.1000 3.0905 33 1 7.7976 5.9955 3.5093 34 1 8.7905 5.5686 2.0947 35 1 8.3632 3.8074 4.5512 36 1 8.4794 7.1735 6.0405 37 1 10.1476 2.4188 3.5116 38 1 10.1507 3.4978 2.0957 39 1 7.8113 1.8077 3.0938 40 1 8.7497 1.5484 1.6021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599271490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:30 Heat of formation + Delta-G solvation = -84.206341 kcal Electronic energy + Delta-G solvation = -28209.097078 eV Core-core repulsion = 23927.280894 eV Total energy + Delta-G solvation = -4281.816184 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -45.71864 -40.84845 -37.90758 -37.47141 -37.10360 -36.01956 -34.74072 -33.54567 -32.66163 -30.98499 -30.23227 -28.64626 -25.87937 -25.52277 -24.02078 -22.69561 -22.45041 -22.16383 -20.16347 -19.59131 -18.57897 -18.09927 -17.94537 -17.44630 -17.08044 -16.83389 -16.28701 -16.18399 -15.76166 -14.60735 -14.57624 -14.23181 -14.18295 -13.89261 -13.66742 -13.25209 -12.97099 -12.93808 -12.81561 -12.57019 -12.33144 -12.19762 -12.07010 -11.93076 -11.56997 -11.43751 -11.38477 -11.19424 -11.04111 -10.99001 -10.73811 -10.65611 -10.42354 -10.11642 -9.65613 -9.29261 -9.07400 -8.56858 -8.35562 -6.05298 -4.11029 -0.04037 0.26078 0.62421 1.74616 2.24543 2.50242 2.90320 3.26967 3.29126 3.35929 3.39520 3.50147 4.03758 4.14551 4.39846 4.40904 4.58792 4.62354 4.69739 4.98978 5.01772 5.09568 5.25048 5.62071 5.63019 5.75454 5.95894 5.99594 6.16083 6.29998 6.34809 6.62063 6.78368 6.92328 6.99491 7.11770 7.25183 7.33315 7.66691 7.89855 8.02334 8.37872 8.92923 9.54520 11.00424 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.002739 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.118625 B =10219.346322 C =10878.528338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.342 6.342 3 C 0.555 3.445 4 O -0.479 6.479 5 C -0.033 4.033 6 C -0.060 4.060 7 C -0.584 4.584 8 S 2.704 3.296 9 O -0.929 6.929 10 O -0.925 6.925 11 N -0.971 5.971 12 C 0.111 3.889 13 C -0.121 4.121 14 C 0.048 3.952 15 C -0.511 4.511 16 H 0.057 0.943 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 C -0.120 4.120 24 C 0.114 3.886 25 O 0.210 5.790 26 N -0.284 5.284 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.204 0.796 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.108 0.892 34 H 0.044 0.956 35 H 0.029 0.971 36 H 0.260 0.740 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.719 -11.001 -10.024 19.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.257 6.257 3 C 0.396 3.604 4 O -0.364 6.364 5 C -0.188 4.188 6 C -0.082 4.082 7 C -0.721 4.721 8 S 2.781 3.219 9 O -0.918 6.918 10 O -0.914 6.914 11 N -0.815 5.815 12 C -0.013 4.013 13 C -0.161 4.161 14 C 0.029 3.971 15 C -0.549 4.549 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 C -0.159 4.159 24 C -0.010 4.010 25 O 0.114 5.886 26 N 0.030 4.970 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.221 0.779 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.114 -11.717 -10.678 20.574 hybrid contribution -0.387 1.062 0.801 1.386 sum -13.501 -10.655 -9.877 19.833 Atomic orbital electron populations 1.23454 0.74601 1.04520 1.03181 1.86600 1.24437 1.31123 1.83567 1.19322 0.85463 0.82324 0.73303 1.90912 1.64960 1.35890 1.44599 1.22543 0.93573 0.90391 1.12277 1.22905 0.89027 1.01650 0.94661 1.38814 1.22722 0.92905 1.17662 1.02622 0.72280 0.73250 0.73708 1.93610 1.52008 1.69712 1.76492 1.93657 1.84052 1.37173 1.76562 1.57659 1.59114 1.33654 1.31041 1.21854 0.98997 0.84537 0.95917 1.21930 0.94648 1.00663 0.98815 1.18641 0.95051 0.90952 0.92442 1.21243 0.92828 1.13408 1.27470 0.92510 1.24961 0.95517 0.97212 0.96327 1.69830 1.18250 1.27623 1.37371 0.86563 0.82816 0.79794 0.78963 1.19816 1.21076 1.21142 1.21975 0.95440 0.98819 0.99662 1.21752 0.91938 0.91004 0.96308 1.84973 1.21482 1.19429 1.62722 1.74144 0.90436 1.23617 1.08789 0.91260 0.87282 0.91188 0.77872 0.90232 0.91686 0.87432 0.93765 0.95293 0.93008 0.91677 0.92408 0.91572 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.56 101.05 1.07 1.30 16 2 O -0.34 -3.62 10.58 -40.37 -0.43 -4.05 16 3 C 0.55 6.75 7.99 34.84 0.28 7.03 16 4 O -0.48 -6.39 16.74 -19.20 -0.32 -6.71 16 5 C -0.03 -0.41 7.24 -82.54 -0.60 -1.01 16 6 C -0.06 -0.71 10.77 -39.07 -0.42 -1.13 16 7 C -0.58 -7.22 7.51 29.69 0.22 -7.00 16 8 S 2.70 37.58 5.89 -107.50 -0.63 36.95 16 9 O -0.93 -14.54 16.61 -57.18 -0.95 -15.49 16 10 O -0.92 -14.36 16.45 -57.17 -0.94 -15.30 16 11 N -0.97 -14.51 3.30 -113.76 -0.37 -14.89 16 12 C 0.11 1.81 6.45 -3.93 -0.03 1.78 16 13 C -0.12 -2.52 5.14 -26.83 -0.14 -2.66 16 14 C 0.05 1.06 2.07 -91.73 -0.19 0.87 16 15 C -0.51 -13.02 8.56 -34.44 -0.29 -13.32 16 16 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 18 N -0.89 -23.75 11.31 55.43 0.63 -23.12 16 19 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 C -0.12 -2.19 5.30 -26.61 -0.14 -2.33 16 24 C 0.11 1.70 6.48 -3.71 -0.02 1.67 16 25 O 0.21 2.67 11.18 17.25 0.19 2.87 16 26 N -0.28 -3.74 12.12 33.29 0.40 -3.34 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.11 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.20 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.08 1.17 6.91 -51.93 -0.36 0.81 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.11 2.53 6.03 -51.93 -0.31 2.22 16 34 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.26 6.66 8.31 -40.82 -0.34 6.33 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.11 6.92 -51.93 -0.36 0.75 16 LS Contribution 355.62 15.07 5.36 5.36 Total: -1.00 -30.69 355.62 -7.24 -37.94 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: -4.80 Total: -2.27 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -0.36 Total: -13.30 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.66 Total: -41.35 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -2.45 Total: -38.69 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: 37.58 SS G_CDS: -0.63 Total: 36.95 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.69 -7.24 -37.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599271490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.269 kcal (2) G-P(sol) polarization free energy of solvation -30.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds