Wall clock time and date at job start Wed Apr 1 2020 03:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34653 * 117.00006 * 2 1 4 4 O 1.21415 * 119.99415 * 359.97438 * 3 2 1 5 5 C 1.48240 * 120.00317 * 180.02562 * 3 2 1 6 6 C 1.42300 * 126.94385 * 179.97438 * 5 3 2 7 7 C 1.35302 * 103.92034 * 179.97438 * 6 5 3 8 8 S 1.76203 * 126.66215 * 180.02562 * 7 6 5 9 9 O 1.42108 * 106.40088 * 203.52144 * 8 7 6 10 10 O 1.42096 * 106.40087 * 336.43930 * 8 7 6 11 11 N 1.65594 * 107.21748 * 89.98168 * 8 7 6 12 12 C 1.46928 * 120.62993 * 269.71616 * 11 8 7 13 13 C 1.52758 * 109.01313 * 233.58642 * 12 11 8 14 14 C 1.53045 * 109.38359 * 305.59074 * 13 12 11 15 15 C 1.50696 * 109.45284 * 181.25172 * 14 13 12 16 16 H 1.07995 * 120.00041 * 239.94438 * 15 14 13 17 17 C 1.37877 * 119.99671 * 59.93448 * 15 14 13 18 18 N 1.31512 * 120.00452 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99839 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47085 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47265 * 120.00526 * 19 17 15 22 22 H 1.48507 * 109.46945 * 240.00488 * 19 17 15 23 23 C 1.53042 * 109.53712 * 61.23394 * 14 13 12 24 24 C 1.46928 * 120.63543 * 90.00285 * 11 8 7 25 25 O 1.34014 * 106.67813 * 359.97438 * 7 6 5 26 26 N 1.20909 * 111.85784 * 0.02562 * 25 7 6 27 27 H 1.08998 * 109.47046 * 60.00428 * 1 2 3 28 28 H 1.09007 * 109.46808 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47318 * 299.99663 * 1 2 3 30 30 H 1.08001 * 128.03426 * 359.95258 * 6 5 3 31 31 H 1.09002 * 109.58838 * 353.42636 * 12 11 8 32 32 H 1.09005 * 109.58516 * 113.84757 * 12 11 8 33 33 H 1.08995 * 109.56392 * 185.55638 * 13 12 11 34 34 H 1.08996 * 109.38708 * 65.51403 * 13 12 11 35 35 H 1.09003 * 109.45777 * 301.21786 * 14 13 12 36 36 H 0.97000 * 120.00000 * 179.97438 * 18 17 15 37 37 H 1.09000 * 109.49884 * 178.68372 * 23 14 13 38 38 H 1.09003 * 109.52294 * 58.61049 * 23 14 13 39 39 H 1.09004 * 109.58643 * 246.15755 * 24 11 8 40 40 H 1.09007 * 109.58145 * 6.43545 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4019 2.2180 -0.0005 5 6 3.5437 1.2774 -0.0006 6 6 4.3382 2.4580 -0.0012 7 6 5.6095 1.9948 -0.0009 8 16 7.0819 2.9626 -0.0008 9 8 8.1039 2.1384 -0.5446 10 8 6.7309 4.2271 -0.5458 11 7 7.4910 3.2324 1.5810 12 6 6.9865 4.4141 2.2936 13 6 8.1670 5.1732 2.8966 14 6 8.9935 4.2211 3.7640 15 6 10.1411 4.9756 4.3842 16 1 11.1581 4.6744 4.1810 17 6 9.8926 6.0507 5.2109 18 7 8.6542 6.4174 5.4586 19 14 11.3151 6.9865 5.9792 20 1 12.5990 6.3792 5.5454 21 1 11.2670 8.4053 5.5437 22 1 11.2102 6.9191 7.4590 23 6 9.5399 3.0837 2.8979 24 6 8.3704 2.2980 2.2967 25 8 5.5313 0.6569 0.0003 26 7 4.3848 0.2729 0.0003 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 4.0040 3.4850 -0.0020 31 1 6.4548 5.0619 1.5965 32 1 6.3122 4.1000 3.0905 33 1 7.7976 5.9955 3.5093 34 1 8.7905 5.5686 2.0947 35 1 8.3632 3.8074 4.5512 36 1 8.4794 7.1735 6.0405 37 1 10.1476 2.4188 3.5116 38 1 10.1507 3.4978 2.0957 39 1 7.8113 1.8077 3.0938 40 1 8.7497 1.5484 1.6021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599271490.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:12:29 Heat of formation + Delta-G solvation = -104.702799 kcal Electronic energy + Delta-G solvation = -28209.985871 eV Core-core repulsion = 23927.280894 eV Total energy + Delta-G solvation = -4282.704977 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.70022 -41.70344 -39.32477 -38.66172 -37.94980 -37.22018 -35.70361 -35.28549 -33.65071 -32.63969 -31.67985 -29.28966 -27.63366 -26.37638 -25.00952 -24.19855 -23.92423 -23.14019 -21.23659 -20.93956 -19.58957 -19.33017 -18.85161 -18.72156 -18.11750 -17.94206 -17.63619 -17.27224 -16.91021 -16.47967 -15.57527 -15.38681 -15.04567 -14.96356 -14.86100 -14.61441 -14.46561 -14.37457 -13.80770 -13.72054 -13.54375 -13.39884 -13.22127 -13.01116 -12.97548 -12.80169 -12.60725 -12.37233 -12.33036 -12.15388 -12.06944 -12.05313 -11.81302 -11.73817 -11.34962 -10.92054 -10.73895 -10.33016 -9.95149 -8.02333 -6.13776 -1.16896 -0.73028 -0.31841 0.92194 1.32064 1.43211 1.47481 1.49844 1.56424 1.81887 2.34918 2.43185 2.48717 3.06979 3.15631 3.25192 3.48330 3.64721 3.76525 4.12871 4.22466 4.22753 4.37370 4.43945 4.53524 4.60373 4.73180 4.83188 4.85273 4.85397 4.96965 5.16417 5.34577 5.39979 5.58384 5.67628 5.75654 6.04172 6.11071 6.24565 6.31608 6.48551 6.97870 7.53817 9.01146 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.002739 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.118625 B =10219.346322 C =10878.528338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.557 3.443 4 O -0.495 6.495 5 C -0.041 4.041 6 C -0.052 4.052 7 C -0.584 4.584 8 S 2.734 3.266 9 O -0.944 6.944 10 O -0.940 6.940 11 N -0.977 5.977 12 C 0.119 3.881 13 C -0.118 4.118 14 C 0.043 3.957 15 C -0.529 4.529 16 H 0.050 0.950 17 C 0.016 3.984 18 N -0.913 5.913 19 Si 0.944 3.056 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.117 4.117 24 C 0.116 3.884 25 O 0.211 5.789 26 N -0.291 5.291 27 H 0.074 0.926 28 H 0.139 0.861 29 H 0.073 0.927 30 H 0.225 0.775 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.030 0.970 35 H 0.008 0.992 36 H 0.259 0.741 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.084 0.916 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.636 -12.063 -10.742 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.399 3.601 4 O -0.382 6.382 5 C -0.196 4.196 6 C -0.074 4.074 7 C -0.723 4.723 8 S 2.814 3.186 9 O -0.934 6.934 10 O -0.929 6.929 11 N -0.818 5.818 12 C -0.005 4.005 13 C -0.158 4.158 14 C 0.024 3.976 15 C -0.567 4.567 16 H 0.068 0.932 17 C -0.183 4.183 18 N -0.553 5.553 19 Si 0.771 3.229 20 H -0.195 1.195 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.156 4.156 24 C -0.008 4.008 25 O 0.114 5.886 26 N 0.023 4.977 27 H 0.093 0.907 28 H 0.157 0.843 29 H 0.091 0.909 30 H 0.242 0.758 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.049 0.951 35 H 0.027 0.973 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.068 0.932 39 H 0.102 0.898 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.011 -12.788 -11.394 22.128 hybrid contribution -0.162 1.325 1.000 1.668 sum -14.172 -11.462 -10.394 20.983 Atomic orbital electron populations 1.23827 0.72377 1.06707 1.03631 1.86595 1.26635 1.30256 1.83004 1.19292 0.85285 0.82601 0.72971 1.90901 1.65220 1.36448 1.45597 1.22758 0.94060 0.90541 1.12252 1.23242 0.88537 1.02506 0.93110 1.38312 1.22207 0.92904 1.18883 1.01510 0.71878 0.72606 0.72648 1.93590 1.53167 1.70072 1.76584 1.93639 1.84393 1.38229 1.76681 1.57559 1.59676 1.33434 1.31174 1.21644 0.97098 0.84953 0.96789 1.21725 0.96007 1.00150 0.97903 1.18633 0.94060 0.92201 0.92706 1.21649 0.93612 1.13823 1.27656 0.93216 1.25610 0.97452 0.98176 0.97059 1.69948 1.19490 1.27956 1.37868 0.85720 0.80517 0.78535 0.78112 1.19532 1.21041 1.20967 1.21867 0.96831 0.97984 0.98963 1.21776 0.90914 0.90736 0.97416 1.84973 1.21398 1.19452 1.62762 1.74134 0.90605 1.23948 1.08979 0.90719 0.84295 0.90870 0.75802 0.88368 0.90514 0.90385 0.95066 0.97348 0.93144 0.91124 0.93217 0.89756 0.87352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.56 113.37 1.20 1.49 16 2 O -0.35 -6.80 10.58 -55.62 -0.59 -7.39 16 3 C 0.56 12.67 7.99 70.48 0.56 13.23 16 4 O -0.50 -12.48 16.74 20.11 0.34 -12.14 16 5 C -0.04 -0.96 7.24 42.94 0.31 -0.65 16 6 C -0.05 -1.10 10.77 22.60 0.24 -0.86 16 7 C -0.58 -13.14 7.51 67.14 0.50 -12.63 16 8 S 2.73 70.50 5.89 -56.49 -0.33 70.17 16 9 O -0.94 -27.69 16.61 -128.00 -2.13 -29.81 16 10 O -0.94 -27.36 16.45 -128.00 -2.11 -29.47 16 11 N -0.98 -27.43 3.30 -513.84 -1.69 -29.12 16 12 C 0.12 3.75 6.45 86.22 0.56 4.31 16 13 C -0.12 -4.98 5.14 30.53 0.16 -4.83 16 14 C 0.04 1.91 2.07 -11.51 -0.02 1.89 16 15 C -0.53 -27.41 8.56 25.60 0.22 -27.20 16 16 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 17 C 0.02 0.82 5.30 84.65 0.45 1.27 16 18 N -0.91 -49.53 11.31 21.45 0.24 -49.29 16 19 Si 0.94 42.24 29.54 68.60 2.03 44.27 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 C -0.12 -4.21 5.30 30.67 0.16 -4.05 16 24 C 0.12 3.21 6.48 86.36 0.56 3.77 16 25 O 0.21 4.95 11.18 71.89 0.80 5.75 16 26 N -0.29 -7.14 12.12 -49.53 -0.60 -7.74 16 27 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.14 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.23 3.65 8.06 -2.91 -0.02 3.63 16 31 H 0.10 2.72 6.91 -2.39 -0.02 2.70 16 32 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 33 H 0.08 3.76 6.03 -2.39 -0.01 3.75 16 34 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.26 13.51 8.31 -92.71 -0.77 12.74 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.11 2.54 6.92 -2.38 -0.02 2.52 16 Total: -1.00 -65.69 355.62 1.94 -63.74 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: 1.08 Total: 5.27 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 4.90 Total: -24.25 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.05 Total: -86.14 kcal Atomic # 8 Polarization: -69.38 SS G_CDS: -3.68 Total: -73.06 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 70.50 SS G_CDS: -0.33 Total: 70.17 kcal Total: -65.69 1.94 -63.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599271490.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.958 kcal (2) G-P(sol) polarization free energy of solvation -65.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds