Wall clock time and date at job start Wed Apr 1 2020 03:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00161 * 2 1 4 4 H 1.48498 * 109.47194 * 240.00267 * 3 2 1 5 5 H 1.48500 * 109.46891 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47102 * 119.99845 * 3 2 1 7 7 C 1.37881 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99591 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00367 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47377 * 185.10965 * 9 7 2 11 11 C 1.46895 * 110.99738 * 295.08593 * 10 9 7 12 12 C 1.53239 * 109.33860 * 187.25036 * 11 10 9 13 13 N 1.47082 * 108.52090 * 306.17186 * 12 11 10 14 14 C 1.34776 * 120.87653 * 230.90560 * 13 12 11 15 15 O 1.21577 * 119.99636 * 175.20418 * 14 13 12 16 16 C 1.47635 * 120.00321 * 355.20930 * 14 13 12 17 17 C 1.39701 * 120.14549 * 331.33082 * 16 14 13 18 18 C 1.37994 * 119.87039 * 179.97438 * 17 16 14 19 19 F 1.35095 * 119.92586 * 180.02562 * 18 17 16 20 20 C 1.38806 * 120.15069 * 359.97438 * 18 17 16 21 21 Cl 1.73594 * 119.85172 * 180.02562 * 20 18 17 22 22 C 1.38322 * 120.29124 * 359.97438 * 20 18 17 23 23 C 1.38261 * 120.13393 * 359.79304 * 22 20 18 24 24 F 1.35095 * 120.08142 * 180.22561 * 23 22 20 25 25 C 1.47072 * 118.23764 * 51.18356 * 13 12 11 26 26 C 1.46906 * 110.99703 * 59.38285 * 10 9 7 27 27 H 0.96999 * 120.00263 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47341 * 65.10468 * 9 7 2 29 29 H 1.09007 * 109.46664 * 305.10949 * 9 7 2 30 30 H 1.09007 * 109.49687 * 67.29369 * 11 10 9 31 31 H 1.09002 * 109.51484 * 307.22154 * 11 10 9 32 32 H 1.08997 * 109.62890 * 186.46086 * 12 11 10 33 33 H 1.09002 * 109.62853 * 65.88142 * 12 11 10 34 34 H 1.08008 * 120.06593 * 359.95863 * 17 16 14 35 35 H 1.07995 * 119.93247 * 180.02562 * 22 20 18 36 36 H 1.08998 * 109.63163 * 68.52891 * 25 13 12 37 37 H 1.09001 * 109.62773 * 189.10147 * 25 13 12 38 38 H 1.08991 * 109.49801 * 292.70995 * 26 10 9 39 39 H 1.09003 * 109.48772 * 52.79042 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2008 -3.6130 0.1245 11 6 3.0787 -3.6895 -1.0508 12 6 3.9268 -4.9631 -0.9687 13 7 4.6207 -4.9795 0.3281 14 6 5.9508 -5.1858 0.3983 15 8 6.5220 -5.1097 1.4688 16 6 6.7140 -5.5040 -0.8248 17 6 6.0929 -6.1650 -1.8873 18 6 6.8116 -6.4591 -3.0280 19 9 6.2119 -7.0978 -4.0564 20 6 8.1489 -6.0994 -3.1216 21 17 9.0455 -6.4727 -4.5605 22 6 8.7701 -5.4438 -2.0739 23 6 8.0601 -5.1390 -0.9274 24 9 8.6666 -4.4947 0.0935 25 6 3.8238 -4.7711 1.5464 26 6 2.9798 -3.5049 1.3653 27 1 -0.4850 0.8400 -0.0004 28 1 0.6951 -2.5978 -0.9318 29 1 0.5572 -2.5181 0.8410 30 1 3.7328 -2.8178 -1.0736 31 1 2.4730 -3.7136 -1.9567 32 1 4.6592 -4.9680 -1.7759 33 1 3.2821 -5.8382 -1.0501 34 1 5.0523 -6.4454 -1.8160 35 1 9.8108 -5.1663 -2.1531 36 1 3.1692 -5.6277 1.7069 37 1 4.4880 -4.6491 2.4020 38 1 3.6351 -2.6359 1.3089 39 1 2.3019 -3.3955 2.2119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:30 Heat of formation + Delta-G solvation = -70.562962 kcal Electronic energy + Delta-G solvation = -27926.070496 eV Core-core repulsion = 23531.714712 eV Total energy + Delta-G solvation = -4394.355784 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.42476 -49.27861 -40.69671 -38.87479 -37.61997 -37.04680 -34.73397 -32.65825 -32.07921 -30.61348 -30.48829 -28.30521 -25.79776 -24.50413 -24.08220 -22.83495 -22.36572 -20.87494 -19.45500 -18.25124 -18.05449 -17.70592 -16.85662 -16.46843 -16.41871 -15.88991 -15.76220 -15.19595 -15.07847 -14.92391 -14.73319 -14.53995 -14.25937 -13.89955 -13.71229 -13.52843 -13.32108 -13.15751 -12.82983 -12.42267 -12.08508 -11.95220 -11.70157 -11.57922 -11.24853 -11.10556 -11.08747 -10.75532 -10.70509 -10.33929 -10.10473 -9.94583 -9.76991 -9.51278 -9.10481 -8.61811 -8.51685 -7.37082 -6.12104 -4.21850 -0.06711 0.32788 1.31580 2.24257 2.75988 3.03986 3.23397 3.28837 3.31511 3.43605 3.60243 3.87620 4.09125 4.33581 4.35366 4.72221 4.74586 4.91545 5.07132 5.14245 5.18580 5.24156 5.32087 5.36665 5.45628 5.57134 5.74960 5.86955 5.94385 5.99399 6.28026 6.46194 6.56986 6.64069 7.10747 7.30238 7.40696 7.78317 7.86458 7.99420 8.08497 8.16613 8.87329 9.45965 10.93159 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.003026 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.686390 B = 9252.285057 C = 9510.653772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.555 4.555 8 H 0.055 0.945 9 C 0.188 3.812 10 N -0.540 5.540 11 C 0.047 3.953 12 C 0.085 3.915 13 N -0.594 5.594 14 C 0.557 3.443 15 O -0.525 6.525 16 C -0.131 4.131 17 C -0.093 4.093 18 C 0.094 3.906 19 F -0.116 7.116 20 C -0.028 4.028 21 Cl -0.030 7.030 22 C -0.129 4.129 23 C 0.162 3.838 24 F -0.105 7.105 25 C 0.115 3.885 26 C 0.050 3.950 27 H 0.264 0.736 28 H 0.030 0.970 29 H 0.037 0.963 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.177 0.823 35 H 0.164 0.836 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.045 0.955 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.923 -14.865 -6.760 22.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.594 4.594 8 H 0.073 0.927 9 C 0.063 3.937 10 N -0.264 5.264 11 C -0.082 4.082 12 C -0.037 4.037 13 N -0.326 5.326 14 C 0.344 3.656 15 O -0.402 6.402 16 C -0.135 4.135 17 C -0.112 4.112 18 C 0.074 3.926 19 F -0.095 7.095 20 C -0.056 4.056 21 Cl -0.001 7.001 22 C -0.148 4.148 23 C 0.141 3.859 24 F -0.083 7.083 25 C -0.006 4.006 26 C -0.079 4.079 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.194 0.806 35 H 0.181 0.819 36 H 0.092 0.908 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.832 -15.160 -6.275 22.118 hybrid contribution 0.927 1.872 -0.342 2.117 sum 15.759 -13.288 -6.617 21.649 Atomic orbital electron populations 1.69921 1.06001 1.27116 1.49673 1.24942 0.94761 0.99163 0.94697 0.86714 0.79726 0.83248 0.78712 1.20264 1.21081 1.20191 1.21679 0.93200 0.92116 1.52374 0.92689 1.19764 0.90641 0.85231 0.98047 1.62525 1.16804 1.46768 1.00337 1.22266 0.95445 0.94782 0.95735 1.22764 0.95908 1.00586 0.84469 1.48057 1.06094 1.69285 1.09151 1.17758 0.82054 0.78231 0.87575 1.90836 1.68700 1.51536 1.29175 1.20030 0.93465 1.03405 0.96615 1.21740 1.01769 0.97393 0.90270 1.17130 0.89537 0.99020 0.86947 1.91595 1.82986 1.78804 1.56089 1.20856 0.91444 1.02068 0.91276 1.98424 1.73949 1.92725 1.34965 1.20846 1.02132 1.00883 0.90959 1.17353 0.89397 0.93836 0.85293 1.91643 1.82388 1.77677 1.56551 1.21960 0.93401 0.99080 0.86200 1.22247 0.96167 0.94919 0.94578 0.92626 0.95241 0.94465 0.93784 0.90004 0.89005 0.90076 0.80594 0.81891 0.90774 0.89113 0.93633 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 13.29 55.43 0.74 -24.60 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.55 -14.59 7.75 -34.44 -0.27 -14.86 16 8 H 0.05 1.45 5.88 -52.49 -0.31 1.15 16 9 C 0.19 4.53 5.11 -4.98 -0.03 4.51 16 10 N -0.54 -10.46 4.83 -235.76 -1.14 -11.60 16 11 C 0.05 0.79 5.24 -3.70 -0.02 0.78 16 12 C 0.09 1.07 4.83 -3.60 -0.02 1.06 16 13 N -0.59 -8.57 3.01 -173.66 -0.52 -9.09 16 14 C 0.56 8.36 7.41 -12.43 -0.09 8.27 16 15 O -0.53 -9.52 15.31 5.30 0.08 -9.44 16 16 C -0.13 -1.57 5.50 -104.91 -0.58 -2.14 16 17 C -0.09 -0.88 7.40 -39.12 -0.29 -1.17 16 18 C 0.09 0.87 7.26 -39.46 -0.29 0.59 16 19 F -0.12 -1.12 16.82 2.25 0.04 -1.08 16 20 C -0.03 -0.25 6.33 -39.34 -0.25 -0.50 16 21 Cl -0.03 -0.24 28.60 -51.86 -1.48 -1.73 16 22 C -0.13 -1.13 9.79 -39.54 -0.39 -1.51 16 23 C 0.16 1.86 7.24 -38.97 -0.28 1.58 16 24 F -0.10 -1.43 15.95 2.25 0.04 -1.39 16 25 C 0.12 1.74 6.61 -3.61 -0.02 1.72 16 26 C 0.05 0.91 5.15 -3.70 -0.02 0.89 16 27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.03 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.04 0.85 6.92 -51.92 -0.36 0.49 16 31 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 32 H 0.09 0.97 4.19 -51.93 -0.22 0.75 16 33 H 0.08 0.89 7.95 -51.93 -0.41 0.47 16 34 H 0.18 1.42 5.23 -52.48 -0.27 1.15 16 35 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.39 7.04 -51.93 -0.37 1.03 16 38 H 0.05 0.95 6.79 -51.93 -0.35 0.59 16 39 H 0.08 1.49 8.11 -51.93 -0.42 1.07 16 LS Contribution 340.63 15.07 5.13 5.13 Total: -1.00 -30.09 340.63 -8.73 -38.82 By element: Atomic # 1 Polarization: 1.97 SS G_CDS: -3.95 Total: -1.98 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -2.63 Total: 0.94 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -0.92 Total: -45.29 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.07 Total: -2.47 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.48 Total: -1.73 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.09 -8.73 -38.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.742 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds