Wall clock time and date at job start Wed Apr 1 2020 03:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00161 * 2 1 4 4 H 1.48498 * 109.47194 * 240.00267 * 3 2 1 5 5 H 1.48500 * 109.46891 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47102 * 119.99845 * 3 2 1 7 7 C 1.37881 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99591 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00367 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47377 * 185.10965 * 9 7 2 11 11 C 1.46895 * 110.99738 * 295.08593 * 10 9 7 12 12 C 1.53239 * 109.33860 * 187.25036 * 11 10 9 13 13 N 1.47082 * 108.52090 * 306.17186 * 12 11 10 14 14 C 1.34776 * 120.87653 * 230.90560 * 13 12 11 15 15 O 1.21577 * 119.99636 * 175.20418 * 14 13 12 16 16 C 1.47635 * 120.00321 * 355.20930 * 14 13 12 17 17 C 1.39701 * 120.14549 * 331.33082 * 16 14 13 18 18 C 1.37994 * 119.87039 * 179.97438 * 17 16 14 19 19 F 1.35095 * 119.92586 * 180.02562 * 18 17 16 20 20 C 1.38806 * 120.15069 * 359.97438 * 18 17 16 21 21 Cl 1.73594 * 119.85172 * 180.02562 * 20 18 17 22 22 C 1.38322 * 120.29124 * 359.97438 * 20 18 17 23 23 C 1.38261 * 120.13393 * 359.79304 * 22 20 18 24 24 F 1.35095 * 120.08142 * 180.22561 * 23 22 20 25 25 C 1.47072 * 118.23764 * 51.18356 * 13 12 11 26 26 C 1.46906 * 110.99703 * 59.38285 * 10 9 7 27 27 H 0.96999 * 120.00263 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.47341 * 65.10468 * 9 7 2 29 29 H 1.09007 * 109.46664 * 305.10949 * 9 7 2 30 30 H 1.09007 * 109.49687 * 67.29369 * 11 10 9 31 31 H 1.09002 * 109.51484 * 307.22154 * 11 10 9 32 32 H 1.08997 * 109.62890 * 186.46086 * 12 11 10 33 33 H 1.09002 * 109.62853 * 65.88142 * 12 11 10 34 34 H 1.08008 * 120.06593 * 359.95863 * 17 16 14 35 35 H 1.07995 * 119.93247 * 180.02562 * 22 20 18 36 36 H 1.08998 * 109.63163 * 68.52891 * 25 13 12 37 37 H 1.09001 * 109.62773 * 189.10147 * 25 13 12 38 38 H 1.08991 * 109.49801 * 292.70995 * 26 10 9 39 39 H 1.09003 * 109.48772 * 52.79042 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2008 -3.6130 0.1245 11 6 3.0787 -3.6895 -1.0508 12 6 3.9268 -4.9631 -0.9687 13 7 4.6207 -4.9795 0.3281 14 6 5.9508 -5.1858 0.3983 15 8 6.5220 -5.1097 1.4688 16 6 6.7140 -5.5040 -0.8248 17 6 6.0929 -6.1650 -1.8873 18 6 6.8116 -6.4591 -3.0280 19 9 6.2119 -7.0978 -4.0564 20 6 8.1489 -6.0994 -3.1216 21 17 9.0455 -6.4727 -4.5605 22 6 8.7701 -5.4438 -2.0739 23 6 8.0601 -5.1390 -0.9274 24 9 8.6666 -4.4947 0.0935 25 6 3.8238 -4.7711 1.5464 26 6 2.9798 -3.5049 1.3653 27 1 -0.4850 0.8400 -0.0004 28 1 0.6951 -2.5978 -0.9318 29 1 0.5572 -2.5181 0.8410 30 1 3.7328 -2.8178 -1.0736 31 1 2.4730 -3.7136 -1.9567 32 1 4.6592 -4.9680 -1.7759 33 1 3.2821 -5.8382 -1.0501 34 1 5.0523 -6.4454 -1.8160 35 1 9.8108 -5.1663 -2.1531 36 1 3.1692 -5.6277 1.7069 37 1 4.4880 -4.6491 2.4020 38 1 3.6351 -2.6359 1.3089 39 1 2.3019 -3.3955 2.2119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602204121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:29 Heat of formation + Delta-G solvation = -89.051347 kcal Electronic energy + Delta-G solvation = -27926.872213 eV Core-core repulsion = 23531.714712 eV Total energy + Delta-G solvation = -4395.157501 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 344.084 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.21671 -50.17099 -41.78477 -39.83526 -38.98370 -37.78010 -36.21046 -34.44246 -33.24280 -31.67509 -31.42615 -29.91221 -27.41939 -25.65339 -25.17637 -24.02501 -23.79394 -22.18303 -20.70547 -19.20190 -19.00858 -18.66564 -18.34506 -17.77812 -17.31977 -17.05227 -16.73681 -16.62929 -16.32750 -16.06058 -15.92465 -15.77915 -15.31218 -15.23032 -15.03943 -14.76414 -14.39880 -14.05567 -13.99553 -13.69017 -13.62457 -13.13325 -12.96458 -12.87719 -12.67385 -12.53308 -12.40423 -12.26474 -12.19595 -11.92514 -11.86550 -11.68429 -11.13771 -10.63190 -10.35531 -9.98730 -9.79780 -9.08829 -8.19221 -6.37896 -0.89647 -0.42966 0.60812 1.29084 1.33928 1.35035 1.42775 1.67396 2.07171 2.33895 2.65029 2.78425 3.01586 3.06469 3.23657 3.28984 3.57112 3.85997 3.97546 4.08431 4.13496 4.22492 4.31475 4.35261 4.44951 4.51722 4.59467 4.61080 4.69508 4.86012 5.02651 5.13419 5.17104 5.21107 5.31251 5.36217 5.71328 5.96236 6.10737 6.24465 6.42918 6.81954 6.84088 7.33657 8.82991 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.013213 B = 0.003026 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.686390 B = 9252.285057 C = 9510.653772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.018 3.982 3 Si 0.949 3.051 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.559 4.559 8 H 0.049 0.951 9 C 0.201 3.799 10 N -0.533 5.533 11 C 0.045 3.955 12 C 0.094 3.906 13 N -0.597 5.597 14 C 0.556 3.444 15 O -0.564 6.564 16 C -0.145 4.145 17 C -0.082 4.082 18 C 0.099 3.901 19 F -0.115 7.115 20 C -0.025 4.025 21 Cl -0.019 7.019 22 C -0.112 4.112 23 C 0.146 3.854 24 F -0.123 7.123 25 C 0.126 3.874 26 C 0.055 3.945 27 H 0.266 0.734 28 H 0.013 0.987 29 H 0.011 0.989 30 H 0.016 0.984 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.195 0.805 35 H 0.188 0.812 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.013 0.987 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.277 -16.091 -8.387 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.182 4.182 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.598 4.598 8 H 0.067 0.933 9 C 0.075 3.925 10 N -0.256 5.256 11 C -0.085 4.085 12 C -0.027 4.027 13 N -0.328 5.328 14 C 0.345 3.655 15 O -0.444 6.444 16 C -0.149 4.149 17 C -0.101 4.101 18 C 0.079 3.921 19 F -0.093 7.093 20 C -0.053 4.053 21 Cl 0.011 6.989 22 C -0.131 4.131 23 C 0.125 3.875 24 F -0.101 7.101 25 C 0.004 3.996 26 C -0.075 4.075 27 H 0.075 0.925 28 H 0.031 0.969 29 H 0.029 0.971 30 H 0.034 0.966 31 H 0.107 0.893 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.211 0.789 35 H 0.205 0.795 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.032 0.968 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.193 -16.404 -7.929 24.376 hybrid contribution 0.541 2.205 0.095 2.272 sum 16.734 -14.200 -7.834 23.303 Atomic orbital electron populations 1.70024 1.07297 1.27960 1.50778 1.25700 0.95539 1.02444 0.94553 0.85756 0.78574 0.79519 0.78743 1.19579 1.20434 1.20105 1.21922 0.93038 0.93271 1.51578 0.93275 1.19427 0.91023 0.86169 0.95915 1.62460 1.17210 1.44129 1.01828 1.22372 0.95108 0.96134 0.94837 1.22894 0.96156 0.99198 0.84453 1.48138 1.06217 1.69006 1.09452 1.18163 0.81954 0.77306 0.88106 1.90811 1.69359 1.53309 1.30903 1.19821 0.93608 1.05287 0.96197 1.21754 1.02426 0.96520 0.89422 1.17117 0.89615 0.98631 0.86748 1.91609 1.82994 1.78727 1.55976 1.20947 0.91462 1.01348 0.91544 1.98438 1.73684 1.92549 1.34247 1.20990 1.02965 0.99562 0.89598 1.17605 0.89543 0.94585 0.85779 1.91597 1.82680 1.78261 1.57570 1.21792 0.93168 0.97976 0.86691 1.22205 0.95672 0.95634 0.93941 0.92500 0.96892 0.97109 0.96594 0.89283 0.86383 0.87002 0.78860 0.79497 0.88399 0.89513 0.96831 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.39 13.29 21.45 0.28 -53.10 16 2 C 0.02 0.98 5.46 84.66 0.46 1.44 16 3 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 7 C -0.56 -30.08 7.75 25.60 0.20 -29.88 16 8 H 0.05 2.66 5.88 -2.91 -0.02 2.64 16 9 C 0.20 9.95 5.11 85.56 0.44 10.39 16 10 N -0.53 -20.70 4.83 -899.82 -4.35 -25.05 16 11 C 0.04 1.47 5.24 86.38 0.45 1.92 16 12 C 0.09 2.15 4.83 86.35 0.42 2.57 16 13 N -0.60 -16.42 3.01 -821.61 -2.47 -18.89 16 14 C 0.56 16.21 7.41 86.72 0.64 16.85 16 15 O -0.56 -20.54 15.31 -3.96 -0.06 -20.60 16 16 C -0.14 -3.23 5.50 -20.05 -0.11 -3.34 16 17 C -0.08 -1.33 7.40 22.57 0.17 -1.16 16 18 C 0.10 1.54 7.26 22.35 0.16 1.70 16 19 F -0.11 -1.82 16.82 44.97 0.76 -1.06 16 20 C -0.02 -0.37 6.33 22.43 0.14 -0.22 16 21 Cl -0.02 -0.25 28.60 -2.72 -0.08 -0.33 16 22 C -0.11 -1.69 9.79 22.30 0.22 -1.47 16 23 C 0.15 3.15 7.24 22.66 0.16 3.32 16 24 F -0.12 -3.33 15.95 44.97 0.72 -2.61 16 25 C 0.13 3.71 6.61 86.35 0.57 4.28 16 26 C 0.05 2.03 5.15 86.38 0.45 2.48 16 27 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 28 H 0.01 0.68 8.07 -2.39 -0.02 0.66 16 29 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.02 0.61 6.92 -2.38 -0.02 0.60 16 31 H 0.09 2.80 8.06 -2.39 -0.02 2.78 16 32 H 0.12 2.12 4.19 -2.39 -0.01 2.11 16 33 H 0.11 1.98 7.95 -2.39 -0.02 1.96 16 34 H 0.19 2.37 5.23 -2.91 -0.02 2.35 16 35 H 0.19 1.84 8.06 -2.91 -0.02 1.82 16 36 H 0.10 2.46 8.14 -2.39 -0.02 2.45 16 37 H 0.09 2.67 7.04 -2.39 -0.02 2.65 16 38 H 0.01 0.58 6.79 -2.39 -0.02 0.56 16 39 H 0.08 2.87 8.11 -2.39 -0.02 2.85 16 Total: -1.00 -66.64 340.63 2.32 -64.32 By element: Atomic # 1 Polarization: 1.79 SS G_CDS: 1.12 Total: 2.91 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 4.37 Total: 8.87 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -6.53 Total: -97.04 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.06 Total: -20.60 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 1.47 Total: -3.67 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.08 Total: -0.33 kcal Total: -66.64 2.32 -64.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.728 kcal (2) G-P(sol) polarization free energy of solvation -66.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds