Wall clock time and date at job start Wed Apr 1 2020 03:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42105 * 110.54128 * 2 1 4 4 O 1.42096 * 110.54221 * 223.25001 * 2 1 3 5 5 N 1.65599 * 104.44918 * 111.62109 * 2 1 3 6 6 C 1.46503 * 119.99525 * 65.00386 * 5 2 1 7 7 C 1.53005 * 109.46858 * 164.99806 * 6 5 2 8 8 N 1.46501 * 109.47234 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00206 * 180.02562 * 8 7 6 10 10 S 1.71197 * 119.99790 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99623 * 179.97438 * 9 8 7 12 12 C 1.39403 * 119.99725 * 185.67617 * 11 9 8 13 13 C 1.38661 * 119.65466 * 185.62726 * 12 11 9 14 14 C 1.40811 * 118.67649 * 179.72694 * 13 12 11 15 15 C 1.41544 * 120.99891 * 180.25052 * 14 13 12 16 16 H 1.07999 * 120.00028 * 145.67908 * 15 14 13 17 17 C 1.40026 * 119.99945 * 325.68796 * 15 14 13 18 18 N 1.30743 * 120.00049 * 354.64762 * 17 15 14 19 19 Si 1.86799 * 120.00200 * 174.65231 * 17 15 14 20 20 H 1.48505 * 109.47119 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47409 * 119.99474 * 19 17 15 22 22 H 1.48503 * 109.47218 * 240.00043 * 19 17 15 23 23 C 1.41169 * 118.00511 * 0.27511 * 14 13 12 24 24 C 1.36583 * 119.13154 * 359.97438 * 23 14 13 25 25 N 1.32068 * 121.26235 * 0.02562 * 24 23 14 26 26 H 1.08999 * 109.47087 * 308.37756 * 1 2 3 27 27 H 1.08996 * 109.46859 * 68.37891 * 1 2 3 28 28 H 1.09003 * 109.46688 * 188.37469 * 1 2 3 29 29 H 0.97000 * 120.00321 * 244.99799 * 5 2 1 30 30 H 1.08997 * 109.47446 * 45.00026 * 6 5 2 31 31 H 1.09000 * 109.47339 * 284.99342 * 6 5 2 32 32 H 1.08997 * 109.46911 * 59.99893 * 7 6 5 33 33 H 1.09000 * 109.46767 * 299.99887 * 7 6 5 34 34 H 0.97007 * 119.99377 * 359.97438 * 8 7 6 35 35 H 0.96996 * 120.00464 * 5.68710 * 11 9 8 36 36 H 1.08005 * 120.65948 * 359.97438 * 13 12 11 37 37 H 0.96999 * 119.99992 * 180.02562 * 18 17 15 38 38 H 1.07999 * 120.43373 * 179.97438 * 23 14 13 39 39 H 1.08006 * 119.36754 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5909 1.4908 6 6 1.8908 -1.9706 1.8508 7 6 2.6876 -2.3830 3.0902 8 7 2.3508 -3.7624 3.4506 9 6 2.9350 -4.3419 4.5180 10 16 4.0713 -3.4662 5.4523 11 7 2.6247 -5.6108 4.8497 12 6 3.1370 -6.1706 6.0191 13 6 2.9102 -7.5105 6.2949 14 6 3.4421 -8.0561 7.4790 15 6 3.2450 -9.4189 7.8065 16 1 4.0178 -9.9670 8.3249 17 6 2.0480 -10.0566 7.4581 18 7 1.0721 -9.3691 6.9251 19 14 1.8455 -11.8897 7.7551 20 1 3.0864 -12.4326 8.3640 21 1 0.7016 -12.1190 8.6739 22 1 1.5879 -12.5750 6.4631 23 6 4.1774 -7.2029 8.3301 24 6 4.3442 -5.8941 7.9768 25 7 3.8312 -5.4155 6.8580 26 1 -0.3633 0.6380 0.8056 27 1 -0.3633 0.3786 -0.9553 28 1 -0.3633 -1.0168 0.1497 29 1 2.6921 -0.0236 2.1256 30 1 2.1395 -2.6333 1.0219 31 1 0.8243 -2.0405 2.0647 32 1 2.4390 -1.7202 3.9190 33 1 3.7541 -2.3130 2.8763 34 1 1.7067 -4.2584 2.9213 35 1 2.0450 -6.1345 4.2748 36 1 2.3403 -8.1243 5.6131 37 1 0.2428 -9.8108 6.6841 38 1 4.6025 -7.5801 9.2484 39 1 4.9065 -5.2381 8.6249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763168249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:09 Heat of formation + Delta-G solvation = 0.953873 kcal Electronic energy + Delta-G solvation = -24171.522827 eV Core-core repulsion = 20368.445089 eV Total energy + Delta-G solvation = -3803.077738 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.43666 -38.14412 -37.53783 -36.44608 -36.26296 -34.47449 -33.77369 -30.58753 -30.01371 -29.63569 -27.91842 -26.10397 -23.69745 -23.37503 -21.88814 -21.08903 -19.96797 -18.42074 -18.21272 -17.93245 -16.83234 -16.65983 -16.39264 -15.81360 -15.53845 -15.18000 -14.84799 -14.81080 -14.32722 -14.25714 -13.94268 -13.77398 -13.69611 -12.94631 -12.91597 -12.76535 -12.63736 -12.53939 -12.42448 -12.03040 -11.76954 -11.52541 -11.35980 -11.25635 -10.93956 -10.47953 -10.33140 -10.17338 -10.06519 -9.65830 -9.41510 -8.58321 -7.97298 -7.57514 -7.01374 -6.81751 -5.46126 -4.65055 -0.23289 1.60000 2.06490 2.53019 2.75285 2.88031 3.00388 3.03717 3.05676 3.22503 3.33906 3.70195 3.81929 3.85264 4.13335 4.26869 4.44686 4.58811 4.66498 4.83721 5.04438 5.14459 5.51383 5.56864 5.63500 5.73716 6.07949 6.38230 6.45076 6.67551 6.68145 6.85560 6.94085 7.07372 7.30706 7.40377 7.64220 7.82732 8.10362 8.41304 8.65512 8.73609 9.57463 10.11637 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.002018 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.981989 B =13871.850092 C =14915.155567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.619 3.381 3 O -0.956 6.956 4 O -0.955 6.955 5 N -1.114 6.114 6 C 0.102 3.898 7 C 0.125 3.875 8 N -0.701 5.701 9 C 0.531 3.469 10 S -0.540 6.540 11 N -0.604 5.604 12 C 0.310 3.690 13 C -0.216 4.216 14 C 0.142 3.858 15 C -0.463 4.463 16 H 0.082 0.918 17 C 0.075 3.925 18 N -0.809 5.809 19 Si 0.914 3.086 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.274 1.274 23 C -0.260 4.260 24 C 0.107 3.893 25 N -0.484 5.484 26 H 0.131 0.869 27 H 0.129 0.871 28 H 0.127 0.873 29 H 0.423 0.577 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.391 0.609 35 H 0.402 0.598 36 H 0.123 0.877 37 H 0.279 0.721 38 H 0.103 0.897 39 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.857 12.036 -13.195 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.710 3.290 3 O -0.946 6.946 4 O -0.945 6.945 5 N -0.875 5.875 6 C -0.026 4.026 7 C -0.001 4.001 8 N -0.336 5.336 9 C 0.177 3.823 10 S -0.410 6.410 11 N -0.227 5.227 12 C 0.083 3.917 13 C -0.243 4.243 14 C 0.134 3.866 15 C -0.495 4.495 16 H 0.100 0.900 17 C -0.141 4.141 18 N -0.436 5.436 19 Si 0.739 3.261 20 H -0.184 1.184 21 H -0.199 1.199 22 H -0.199 1.199 23 C -0.284 4.284 24 C -0.049 4.049 25 N -0.201 5.201 26 H 0.149 0.851 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.259 0.741 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.227 0.773 35 H 0.239 0.761 36 H 0.141 0.859 37 H 0.089 0.911 38 H 0.121 0.879 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.637 13.778 -13.651 20.197 hybrid contribution -2.232 -2.734 -0.069 3.531 sum -7.869 11.043 -13.720 19.290 Atomic orbital electron populations 1.30535 1.28361 1.11713 1.11767 1.04639 0.77509 0.73853 0.72989 1.93641 1.77927 1.37523 1.85513 1.93633 1.76961 1.61846 1.62040 1.55423 1.74524 1.20612 1.36939 1.21419 0.99393 0.82815 0.98954 1.21561 1.01216 0.81215 0.96114 1.44790 1.44759 1.15193 1.28820 1.22322 0.88207 0.85720 0.86082 1.92896 1.32996 1.59529 1.55590 1.42225 1.47027 1.10302 1.23139 1.18214 0.97230 0.89629 0.86583 1.21549 1.10043 0.92032 1.00655 1.17562 0.87482 0.93193 0.88406 1.19538 1.01341 0.94833 1.33815 0.89984 1.25872 0.95254 1.00384 0.92590 1.69726 1.04095 1.37374 1.32387 0.86159 0.79321 0.81815 0.78810 1.18391 1.19946 1.19880 1.21933 1.09849 0.95212 1.01394 1.21889 0.97084 0.93035 0.92855 1.69554 1.13044 1.33831 1.03717 0.85068 0.85245 0.85391 0.74104 0.89430 0.91143 0.89047 0.88904 0.77317 0.76122 0.85921 0.91072 0.87893 0.85621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.76 10.89 101.05 1.10 -0.66 16 2 S 2.62 15.96 6.10 -107.50 -0.66 15.30 16 3 O -0.96 -9.39 18.08 -57.54 -1.04 -10.43 16 4 O -0.95 -9.57 17.50 -57.54 -1.01 -10.57 16 5 N -1.11 -5.94 5.89 -10.61 -0.06 -6.00 16 6 C 0.10 0.55 6.25 -4.04 -0.03 0.53 16 7 C 0.13 1.12 5.27 -4.04 -0.02 1.09 16 8 N -0.70 -7.47 5.56 -62.03 -0.34 -7.81 16 9 C 0.53 8.77 7.94 -86.92 -0.69 8.08 16 10 S -0.54 -11.26 25.37 -107.50 -2.73 -13.98 16 11 N -0.60 -10.58 5.39 -13.03 -0.07 -10.65 16 12 C 0.31 6.96 7.37 -154.71 -1.14 5.82 16 13 C -0.22 -5.18 8.56 -38.45 -0.33 -5.51 16 14 C 0.14 3.59 5.52 -106.55 -0.59 3.00 16 15 C -0.46 -11.59 9.10 -37.65 -0.34 -11.93 16 16 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 17 C 0.08 1.79 5.34 -17.35 -0.09 1.69 16 18 N -0.81 -19.49 11.03 55.55 0.61 -18.88 16 19 Si 0.91 17.77 29.56 -169.99 -5.03 12.75 16 20 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 23 C -0.26 -6.13 9.85 -39.07 -0.38 -6.51 16 24 C 0.11 2.45 11.10 -18.05 -0.20 2.25 16 25 N -0.48 -11.47 6.18 -12.76 -0.08 -11.55 16 26 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 27 H 0.13 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.13 0.18 8.14 -51.92 -0.42 -0.25 16 29 H 0.42 1.99 8.62 -34.47 -0.30 1.69 16 30 H 0.09 0.47 7.69 -51.93 -0.40 0.07 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.09 0.88 7.99 -51.93 -0.41 0.46 16 33 H 0.09 0.97 7.99 -51.93 -0.42 0.56 16 34 H 0.39 2.83 8.49 -40.82 -0.35 2.48 16 35 H 0.40 5.62 8.72 -40.82 -0.36 5.26 16 36 H 0.12 2.93 6.58 -52.48 -0.35 2.58 16 37 H 0.28 6.11 8.29 -40.82 -0.34 5.77 16 38 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 39 H 0.13 2.58 8.06 -52.48 -0.42 2.15 16 LS Contribution 360.08 15.07 5.43 5.43 Total: -1.00 -37.02 360.08 -12.34 -49.36 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -4.66 Total: 9.18 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -2.71 Total: -2.15 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.06 Total: -54.89 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -2.05 Total: -21.00 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.03 Total: 12.75 kcal Atomic # 16 Polarization: 4.70 SS G_CDS: -3.38 Total: 1.32 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.02 -12.34 -49.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763168249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.318 kcal (2) G-P(sol) polarization free energy of solvation -37.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds