Wall clock time and date at job start Wed Apr 1 2020 03:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 O 1.42105 * 110.54128 * 2 1 4 4 O 1.42096 * 110.54221 * 223.25001 * 2 1 3 5 5 N 1.65599 * 104.44918 * 111.62109 * 2 1 3 6 6 C 1.46503 * 119.99525 * 65.00386 * 5 2 1 7 7 C 1.53005 * 109.46858 * 164.99806 * 6 5 2 8 8 N 1.46501 * 109.47234 * 179.97438 * 7 6 5 9 9 C 1.34779 * 120.00206 * 180.02562 * 8 7 6 10 10 S 1.71197 * 119.99790 * 359.97438 * 9 8 7 11 11 N 1.34771 * 119.99623 * 179.97438 * 9 8 7 12 12 C 1.39403 * 119.99725 * 185.67617 * 11 9 8 13 13 C 1.38661 * 119.65466 * 185.62726 * 12 11 9 14 14 C 1.40811 * 118.67649 * 179.72694 * 13 12 11 15 15 C 1.41544 * 120.99891 * 180.25052 * 14 13 12 16 16 H 1.07999 * 120.00028 * 145.67908 * 15 14 13 17 17 C 1.40026 * 119.99945 * 325.68796 * 15 14 13 18 18 N 1.30743 * 120.00049 * 354.64762 * 17 15 14 19 19 Si 1.86799 * 120.00200 * 174.65231 * 17 15 14 20 20 H 1.48505 * 109.47119 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47409 * 119.99474 * 19 17 15 22 22 H 1.48503 * 109.47218 * 240.00043 * 19 17 15 23 23 C 1.41169 * 118.00511 * 0.27511 * 14 13 12 24 24 C 1.36583 * 119.13154 * 359.97438 * 23 14 13 25 25 N 1.32068 * 121.26235 * 0.02562 * 24 23 14 26 26 H 1.08999 * 109.47087 * 308.37756 * 1 2 3 27 27 H 1.08996 * 109.46859 * 68.37891 * 1 2 3 28 28 H 1.09003 * 109.46688 * 188.37469 * 1 2 3 29 29 H 0.97000 * 120.00321 * 244.99799 * 5 2 1 30 30 H 1.08997 * 109.47446 * 45.00026 * 6 5 2 31 31 H 1.09000 * 109.47339 * 284.99342 * 6 5 2 32 32 H 1.08997 * 109.46911 * 59.99893 * 7 6 5 33 33 H 1.09000 * 109.46767 * 299.99887 * 7 6 5 34 34 H 0.97007 * 119.99377 * 359.97438 * 8 7 6 35 35 H 0.96996 * 120.00464 * 5.68710 * 11 9 8 36 36 H 1.08005 * 120.65948 * 359.97438 * 13 12 11 37 37 H 0.96999 * 119.99992 * 180.02562 * 18 17 15 38 38 H 1.07999 * 120.43373 * 179.97438 * 23 14 13 39 39 H 1.08006 * 119.36754 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.3127 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 7 2.2273 -0.5909 1.4908 6 6 1.8908 -1.9706 1.8508 7 6 2.6876 -2.3830 3.0902 8 7 2.3508 -3.7624 3.4506 9 6 2.9350 -4.3419 4.5180 10 16 4.0713 -3.4662 5.4523 11 7 2.6247 -5.6108 4.8497 12 6 3.1370 -6.1706 6.0191 13 6 2.9102 -7.5105 6.2949 14 6 3.4421 -8.0561 7.4790 15 6 3.2450 -9.4189 7.8065 16 1 4.0178 -9.9670 8.3249 17 6 2.0480 -10.0566 7.4581 18 7 1.0721 -9.3691 6.9251 19 14 1.8455 -11.8897 7.7551 20 1 3.0864 -12.4326 8.3640 21 1 0.7016 -12.1190 8.6739 22 1 1.5879 -12.5750 6.4631 23 6 4.1774 -7.2029 8.3301 24 6 4.3442 -5.8941 7.9768 25 7 3.8312 -5.4155 6.8580 26 1 -0.3633 0.6380 0.8056 27 1 -0.3633 0.3786 -0.9553 28 1 -0.3633 -1.0168 0.1497 29 1 2.6921 -0.0236 2.1256 30 1 2.1395 -2.6333 1.0219 31 1 0.8243 -2.0405 2.0647 32 1 2.4390 -1.7202 3.9190 33 1 3.7541 -2.3130 2.8763 34 1 1.7067 -4.2584 2.9213 35 1 2.0450 -6.1345 4.2748 36 1 2.3403 -8.1243 5.6131 37 1 0.2428 -9.8108 6.6841 38 1 4.6025 -7.5801 9.2484 39 1 4.9065 -5.2381 8.6249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763168249.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:09 Heat of formation + Delta-G solvation = -27.533449 kcal Electronic energy + Delta-G solvation = -24172.758130 eV Core-core repulsion = 20368.445089 eV Total energy + Delta-G solvation = -3804.313041 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.99991 -39.45902 -38.18443 -37.33358 -36.99750 -35.87493 -35.16451 -32.40148 -31.01102 -30.24764 -29.05882 -27.90684 -25.07594 -24.23763 -23.53595 -22.71781 -20.49767 -19.84433 -19.55448 -18.71947 -17.93955 -17.38019 -17.27504 -17.04685 -16.62619 -16.47444 -16.11755 -15.99499 -15.68705 -15.54159 -15.40883 -14.63372 -14.34265 -14.20152 -13.95543 -13.85200 -13.43663 -13.28845 -13.18459 -13.07650 -12.87780 -12.83439 -12.69475 -12.61548 -12.08014 -11.98116 -11.96365 -11.85677 -11.22919 -10.92787 -10.43952 -10.32653 -9.81234 -9.13147 -8.70273 -8.56701 -7.12728 -6.52150 -0.67920 0.12185 1.04148 1.05289 1.16535 1.42810 1.49445 1.55882 1.58537 1.87208 2.23441 2.62887 2.86634 2.92368 3.28924 3.55099 3.74571 4.04591 4.07781 4.09545 4.22340 4.38905 4.53876 4.64497 4.68311 4.84132 4.90681 4.94235 4.99747 5.07505 5.25537 5.30943 5.46396 5.57605 5.93782 5.98239 6.02992 6.25990 6.42443 6.58424 6.82078 6.89607 7.80068 8.36796 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.021386 B = 0.002018 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.981989 B =13871.850092 C =14915.155567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.651 4.651 2 S 2.626 3.374 3 O -1.001 7.001 4 O -1.001 7.001 5 N -1.115 6.115 6 C 0.105 3.895 7 C 0.121 3.879 8 N -0.663 5.663 9 C 0.555 3.445 10 S -0.633 6.633 11 N -0.598 5.598 12 C 0.313 3.687 13 C -0.229 4.229 14 C 0.113 3.887 15 C -0.494 4.494 16 H 0.079 0.921 17 C 0.038 3.962 18 N -0.831 5.831 19 Si 0.985 3.015 20 H -0.261 1.261 21 H -0.269 1.269 22 H -0.264 1.264 23 C -0.273 4.273 24 C 0.101 3.899 25 N -0.496 5.496 26 H 0.150 0.850 27 H 0.144 0.856 28 H 0.151 0.849 29 H 0.426 0.574 30 H 0.092 0.908 31 H 0.110 0.890 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.417 0.583 35 H 0.421 0.579 36 H 0.120 0.880 37 H 0.288 0.712 38 H 0.113 0.887 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.496 11.548 -14.513 20.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.805 4.805 2 S 2.723 3.277 3 O -0.991 6.991 4 O -0.991 6.991 5 N -0.876 5.876 6 C -0.022 4.022 7 C -0.004 4.004 8 N -0.296 5.296 9 C 0.196 3.804 10 S -0.504 6.504 11 N -0.224 5.224 12 C 0.084 3.916 13 C -0.256 4.256 14 C 0.105 3.895 15 C -0.526 4.526 16 H 0.098 0.902 17 C -0.176 4.176 18 N -0.458 5.458 19 Si 0.807 3.193 20 H -0.185 1.185 21 H -0.194 1.194 22 H -0.189 1.189 23 C -0.296 4.296 24 C -0.054 4.054 25 N -0.214 5.214 26 H 0.168 0.832 27 H 0.162 0.838 28 H 0.169 0.831 29 H 0.261 0.739 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.095 0.905 34 H 0.257 0.743 35 H 0.261 0.739 36 H 0.137 0.863 37 H 0.098 0.902 38 H 0.131 0.869 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.274 13.323 -15.044 21.732 hybrid contribution -1.530 -2.491 0.219 2.932 sum -9.805 10.832 -14.825 20.815 Atomic orbital electron populations 1.30328 1.22733 1.13913 1.13530 1.04153 0.79266 0.72137 0.72193 1.93582 1.80144 1.39411 1.85982 1.93573 1.79313 1.62661 1.63556 1.55258 1.75221 1.20622 1.36463 1.21492 1.00894 0.82753 0.97030 1.21742 1.01185 0.79662 0.97840 1.44644 1.42863 1.15779 1.26343 1.21872 0.87252 0.84844 0.86472 1.93121 1.37137 1.60919 1.59215 1.41943 1.47299 1.10805 1.22319 1.18343 0.96326 0.89363 0.87525 1.21500 1.10754 0.92744 1.00560 1.17958 0.88324 0.93951 0.89304 1.19767 1.02315 0.95287 1.35230 0.90240 1.26659 0.94407 1.04625 0.91930 1.69759 1.04576 1.39160 1.32311 0.85094 0.79110 0.76144 0.78974 1.18469 1.19385 1.18854 1.22082 1.10236 0.95465 1.01863 1.22250 0.96935 0.93184 0.93080 1.69738 1.13422 1.34181 1.04079 0.83151 0.83781 0.83055 0.73856 0.88955 0.87221 0.89248 0.90499 0.74326 0.73891 0.86263 0.90153 0.86901 0.83769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -0.73 10.89 113.37 1.23 0.50 16 2 S 2.63 28.21 6.10 -56.49 -0.34 27.87 16 3 O -1.00 -19.47 18.08 -127.65 -2.31 -21.78 16 4 O -1.00 -19.26 17.50 -127.65 -2.23 -21.49 16 5 N -1.12 -9.83 5.89 -187.48 -1.10 -10.93 16 6 C 0.11 0.81 6.25 86.38 0.54 1.35 16 7 C 0.12 1.92 5.27 86.38 0.46 2.38 16 8 N -0.66 -12.36 5.56 -350.17 -1.95 -14.30 16 9 C 0.55 17.61 7.94 179.06 1.42 19.03 16 10 S -0.63 -26.70 25.37 -56.49 -1.43 -28.13 16 11 N -0.60 -20.23 5.39 -195.13 -1.05 -21.28 16 12 C 0.31 14.06 7.37 132.78 0.98 15.04 16 13 C -0.23 -11.09 8.56 23.00 0.20 -10.89 16 14 C 0.11 5.83 5.52 -21.12 -0.12 5.71 16 15 C -0.49 -25.09 9.10 23.52 0.21 -24.88 16 16 H 0.08 3.92 7.85 -2.91 -0.02 3.90 16 17 C 0.04 1.80 5.34 85.29 0.46 2.25 16 18 N -0.83 -39.69 11.03 21.84 0.24 -39.45 16 19 Si 0.99 35.80 29.56 68.60 2.03 37.83 16 20 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 21 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 22 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 23 C -0.27 -13.14 9.85 22.60 0.22 -12.91 16 24 C 0.10 4.70 11.10 84.27 0.94 5.64 16 25 N -0.50 -23.79 6.18 -194.29 -1.20 -24.99 16 26 H 0.15 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.14 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.15 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H 0.43 3.60 8.62 -96.74 -0.83 2.77 16 30 H 0.09 0.68 7.69 -2.39 -0.02 0.67 16 31 H 0.11 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.09 1.58 7.99 -2.39 -0.02 1.56 16 33 H 0.08 1.57 7.99 -2.39 -0.02 1.55 16 34 H 0.42 4.29 8.49 -92.70 -0.79 3.50 16 35 H 0.42 10.88 8.72 -92.71 -0.81 10.07 16 36 H 0.12 5.73 6.58 -2.91 -0.02 5.71 16 37 H 0.29 12.34 8.29 -92.71 -0.77 11.57 16 38 H 0.11 5.01 8.06 -2.91 -0.02 4.99 16 39 H 0.15 5.99 8.06 -2.91 -0.02 5.96 16 Total: -1.00 -83.76 360.08 -4.12 -87.88 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -1.30 Total: 25.56 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 6.54 Total: 3.21 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -5.06 Total: -110.95 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -4.54 Total: -43.27 kcal Atomic # 14 Polarization: 35.80 SS G_CDS: 2.03 Total: 37.83 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.78 Total: -0.26 kcal Total: -83.76 -4.12 -87.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763168249.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.342 kcal (2) G-P(sol) polarization free energy of solvation -83.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds