Wall clock time and date at job start Wed Apr 1 2020 02:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 5 5 C 1.34777 * 120.00033 * 84.99600 * 4 2 1 6 6 O 1.21697 * 119.99568 * 0.02562 * 5 4 2 7 7 C 1.46656 * 119.99986 * 180.02562 * 5 4 2 8 8 C 1.36542 * 125.98728 * 179.71607 * 7 5 4 9 9 C 1.40357 * 106.71063 * 179.85380 * 8 7 5 10 10 C 1.35134 * 107.11254 * 0.40786 * 9 8 7 11 11 O 1.33928 * 108.76846 * 359.74881 * 10 9 8 12 12 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 13 13 O 1.21283 * 120.00261 * 120.00003 * 12 2 1 14 14 N 1.34777 * 120.00075 * 300.00543 * 12 2 1 15 15 S 1.65599 * 120.00205 * 179.97438 * 14 12 2 16 16 O 1.42091 * 104.27694 * 181.06703 * 15 14 12 17 17 O 1.42098 * 104.27491 * 308.92611 * 15 14 12 18 18 C 1.81401 * 104.44888 * 64.99605 * 15 14 12 19 19 C 1.52999 * 109.47097 * 180.02562 * 18 15 14 20 20 C 1.50700 * 109.47169 * 180.02562 * 19 18 15 21 21 H 1.07995 * 120.00311 * 359.97438 * 20 19 18 22 22 C 1.37887 * 119.99830 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99792 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99711 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47269 * 59.99742 * 24 22 20 26 26 H 1.48500 * 109.47132 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47387 * 299.99629 * 24 22 20 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.96992 * 120.00062 * 265.00053 * 4 2 1 32 32 H 1.08005 * 126.64536 * 359.96241 * 8 7 5 33 33 H 1.08003 * 126.45148 * 180.15311 * 9 8 7 34 34 H 1.08005 * 125.61655 * 179.70269 * 10 9 8 35 35 H 0.96996 * 119.99636 * 359.97438 * 14 12 2 36 36 H 1.09009 * 109.47488 * 299.99938 * 18 15 14 37 37 H 1.08998 * 109.47545 * 60.00360 * 18 15 14 38 38 H 1.08999 * 109.47134 * 299.99943 * 19 18 15 39 39 H 1.08999 * 109.47356 * 59.99897 * 19 18 15 40 40 H 0.97003 * 119.99439 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8579 1.1627 -2.4116 7 6 2.6354 -0.7096 -3.5548 8 6 2.8068 -0.1520 -4.7893 9 6 3.2914 -1.1683 -5.6274 10 6 3.3846 -2.2898 -4.8794 11 8 2.9884 -2.0095 -3.6312 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2501 2.4545 15 16 2.2583 -1.0311 3.8066 16 8 1.7052 -0.2932 4.8876 17 8 1.9079 -2.3915 3.5929 18 6 4.0591 -0.8208 3.7478 19 6 4.6926 -1.5079 4.9592 20 6 6.1886 -1.3327 4.9107 21 1 6.6423 -0.7864 4.0971 22 6 6.9783 -1.8708 5.9047 23 7 6.4259 -2.5366 6.8953 24 14 8.8327 -1.6543 5.8442 25 1 9.1631 -0.2066 5.8677 26 1 9.4476 -2.3210 7.0201 27 1 9.3617 -2.2625 4.5970 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 2.2491 -1.6316 -1.1527 32 1 2.6096 0.8730 -5.0667 33 1 3.5389 -1.0731 -6.6744 34 1 3.7222 -3.2538 -5.2306 35 1 1.1493 0.5387 2.5435 36 1 4.4475 -1.2680 2.8327 37 1 4.3017 0.2417 3.7643 38 1 4.3044 -1.0611 5.8745 39 1 4.4501 -2.5704 4.9424 40 1 6.9815 -2.9148 7.5947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776122427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:40 Heat of formation + Delta-G solvation = -131.961477 kcal Electronic energy + Delta-G solvation = -27481.766060 eV Core-core repulsion = 23197.879058 eV Total energy + Delta-G solvation = -4283.887002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.05116 -40.86838 -39.43360 -36.81172 -35.71629 -35.54522 -34.75364 -33.93721 -33.45635 -31.61960 -31.22128 -29.77121 -25.72008 -25.54130 -23.77675 -22.18233 -21.77997 -21.35297 -20.69410 -19.60788 -19.34695 -17.96483 -17.46952 -16.82290 -16.68473 -16.56562 -16.37286 -15.93402 -15.33875 -15.16361 -15.01205 -14.70857 -14.56991 -14.15865 -13.62794 -13.52272 -13.38069 -13.15477 -13.03940 -12.85699 -12.57127 -12.44854 -12.14369 -11.85844 -11.79869 -11.69969 -11.11439 -11.05915 -10.99398 -10.77107 -10.51223 -10.45699 -10.43847 -10.35952 -9.76381 -9.70645 -9.23338 -9.08263 -8.51851 -6.14471 -4.20162 0.38519 0.66322 1.79678 1.96085 2.19149 2.51421 2.77836 2.84863 3.27108 3.31655 3.33770 3.73821 3.99637 4.25651 4.35520 4.50243 4.51847 4.52973 4.60805 4.65881 4.75577 5.11017 5.20835 5.22568 5.30267 5.37621 5.49757 5.52911 5.65473 5.69473 5.78421 5.90839 6.37725 6.40950 6.46253 7.01888 7.16593 7.24790 7.31013 7.61981 7.78334 8.13736 8.82565 9.44545 10.96578 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.011389 B = 0.002781 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.018520 B =10066.722309 C =11825.307992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.124 3.876 3 H 0.130 0.870 4 N -0.705 5.705 5 C 0.611 3.389 6 O -0.519 6.519 7 C -0.081 4.081 8 C -0.116 4.116 9 C -0.229 4.229 10 C 0.001 3.999 11 O -0.161 6.161 12 C 0.533 3.467 13 O -0.482 6.482 14 N -1.053 6.053 15 S 2.565 3.435 16 O -0.950 6.950 17 O -0.936 6.936 18 C -0.575 4.575 19 C 0.030 3.970 20 C -0.521 4.521 21 H 0.062 0.938 22 C 0.059 3.941 23 N -0.890 5.890 24 Si 0.902 3.098 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.418 0.582 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.212 0.788 35 H 0.431 0.569 36 H 0.131 0.869 37 H 0.123 0.877 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.178 5.175 -22.983 26.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.014 3.986 3 H 0.147 0.853 4 N -0.359 5.359 5 C 0.398 3.602 6 O -0.397 6.397 7 C -0.134 4.134 8 C -0.136 4.136 9 C -0.248 4.248 10 C -0.070 4.070 11 O -0.055 6.055 12 C 0.317 3.683 13 O -0.352 6.352 14 N -0.814 5.814 15 S 2.665 3.335 16 O -0.941 6.941 17 O -0.926 6.926 18 C -0.710 4.710 19 C -0.009 4.009 20 C -0.560 4.560 21 H 0.080 0.920 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.729 3.271 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.200 1.200 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.257 0.743 32 H 0.179 0.821 33 H 0.175 0.825 34 H 0.228 0.772 35 H 0.266 0.734 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.472 4.535 -22.048 25.265 hybrid contribution 1.416 0.348 -0.436 1.522 sum -10.056 4.883 -22.484 25.110 Atomic orbital electron populations 1.22196 0.91740 1.04040 1.04340 1.20951 0.96550 0.98478 0.82597 0.85257 1.45668 1.66736 1.15366 1.08124 1.16464 0.77276 0.85560 0.80888 1.90893 1.50722 1.14047 1.84049 1.21887 1.11627 0.82899 0.96940 1.21992 0.99350 1.01281 0.91020 1.21891 1.08035 0.92864 1.01964 1.24502 1.00263 1.01032 0.81167 1.84108 1.63647 1.26280 1.31513 1.20475 0.78898 0.83844 0.85041 1.90930 1.34561 1.23605 1.86115 1.55431 1.60788 1.43076 1.22122 1.06813 0.79927 0.74437 0.72336 1.93600 1.77790 1.72782 1.49899 1.93601 1.82552 1.33016 1.83400 1.30347 1.18198 1.10725 1.11710 1.18988 0.97445 0.95916 0.88543 1.20936 0.90086 1.35824 1.09195 0.92006 1.25062 0.99333 0.94827 0.95196 1.69943 1.36013 1.35150 1.11718 0.86500 0.84485 0.78449 0.77669 1.20047 1.21039 1.20021 0.90219 0.91046 0.90028 0.74336 0.82096 0.82456 0.77156 0.73363 0.85078 0.85914 0.94716 0.94562 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.20 9.38 37.16 0.35 -0.85 16 2 C 0.12 1.17 2.98 -69.08 -0.21 0.96 16 3 H 0.13 1.06 7.58 -51.93 -0.39 0.67 16 4 N -0.71 -7.26 4.95 -56.25 -0.28 -7.54 16 5 C 0.61 6.80 7.75 -12.86 -0.10 6.70 16 6 O -0.52 -6.72 16.53 5.19 0.09 -6.64 16 7 C -0.08 -0.83 7.13 -36.80 -0.26 -1.09 16 8 C -0.12 -1.01 10.62 -39.40 -0.42 -1.43 16 9 C -0.23 -1.52 10.87 -39.89 -0.43 -1.96 16 10 C 0.00 0.00 12.08 29.63 0.36 0.36 16 11 O -0.16 -1.50 10.40 5.00 0.05 -1.45 16 12 C 0.53 6.53 6.96 -10.99 -0.08 6.45 16 13 O -0.48 -7.64 13.94 -11.57 -0.16 -7.80 16 14 N -1.05 -12.19 5.50 31.22 0.17 -12.02 16 15 S 2.56 44.23 5.11 -107.50 -0.55 43.68 16 16 O -0.95 -18.00 18.08 -57.54 -1.04 -19.04 16 17 O -0.94 -19.50 17.04 -64.79 -1.10 -20.61 16 18 C -0.58 -11.08 5.82 37.16 0.22 -10.86 16 19 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 20 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 21 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 24 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.08 0.41 7.56 -51.93 -0.39 0.02 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.42 4.33 7.55 -40.82 -0.31 4.02 16 32 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 33 H 0.16 0.65 8.06 -52.48 -0.42 0.22 16 34 H 0.21 0.52 8.06 -52.48 -0.42 0.09 16 35 H 0.43 3.14 8.21 -34.47 -0.28 2.86 16 36 H 0.13 2.48 7.19 -51.92 -0.37 2.10 16 37 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 38 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -38.31 367.85 -7.36 -45.67 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -4.67 Total: 3.91 kcal Atomic # 6 Polarization: -13.16 SS G_CDS: -1.12 Total: -14.28 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.63 Total: -45.25 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -2.17 Total: -55.53 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 44.23 SS G_CDS: -0.55 Total: 43.68 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.31 -7.36 -45.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776122427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.289 kcal (2) G-P(sol) polarization free energy of solvation -38.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds