Wall clock time and date at job start Wed Apr 1 2020 02:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 5 5 C 1.34777 * 120.00033 * 84.99600 * 4 2 1 6 6 O 1.21697 * 119.99568 * 0.02562 * 5 4 2 7 7 C 1.46656 * 119.99986 * 180.02562 * 5 4 2 8 8 C 1.36542 * 125.98728 * 179.71607 * 7 5 4 9 9 C 1.40357 * 106.71063 * 179.85380 * 8 7 5 10 10 C 1.35134 * 107.11254 * 0.40786 * 9 8 7 11 11 O 1.33928 * 108.76846 * 359.74881 * 10 9 8 12 12 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 13 13 O 1.21283 * 120.00261 * 120.00003 * 12 2 1 14 14 N 1.34777 * 120.00075 * 300.00543 * 12 2 1 15 15 S 1.65599 * 120.00205 * 179.97438 * 14 12 2 16 16 O 1.42091 * 104.27694 * 181.06703 * 15 14 12 17 17 O 1.42098 * 104.27491 * 308.92611 * 15 14 12 18 18 C 1.81401 * 104.44888 * 64.99605 * 15 14 12 19 19 C 1.52999 * 109.47097 * 180.02562 * 18 15 14 20 20 C 1.50700 * 109.47169 * 180.02562 * 19 18 15 21 21 H 1.07995 * 120.00311 * 359.97438 * 20 19 18 22 22 C 1.37887 * 119.99830 * 180.02562 * 20 19 18 23 23 N 1.31513 * 119.99792 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 119.99711 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47269 * 59.99742 * 24 22 20 26 26 H 1.48500 * 109.47132 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.47387 * 299.99629 * 24 22 20 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 0.96992 * 120.00062 * 265.00053 * 4 2 1 32 32 H 1.08005 * 126.64536 * 359.96241 * 8 7 5 33 33 H 1.08003 * 126.45148 * 180.15311 * 9 8 7 34 34 H 1.08005 * 125.61655 * 179.70269 * 10 9 8 35 35 H 0.96996 * 119.99636 * 359.97438 * 14 12 2 36 36 H 1.09009 * 109.47488 * 299.99938 * 18 15 14 37 37 H 1.08998 * 109.47545 * 60.00360 * 18 15 14 38 38 H 1.08999 * 109.47134 * 299.99943 * 19 18 15 39 39 H 1.08999 * 109.47356 * 59.99897 * 19 18 15 40 40 H 0.97003 * 119.99439 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3572 6 8 1.8579 1.1627 -2.4116 7 6 2.6354 -0.7096 -3.5548 8 6 2.8068 -0.1520 -4.7893 9 6 3.2914 -1.1683 -5.6274 10 6 3.3846 -2.2898 -4.8794 11 8 2.9884 -2.0095 -3.6312 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2501 2.4545 15 16 2.2583 -1.0311 3.8066 16 8 1.7052 -0.2932 4.8876 17 8 1.9079 -2.3915 3.5929 18 6 4.0591 -0.8208 3.7478 19 6 4.6926 -1.5079 4.9592 20 6 6.1886 -1.3327 4.9107 21 1 6.6423 -0.7864 4.0971 22 6 6.9783 -1.8708 5.9047 23 7 6.4259 -2.5366 6.8953 24 14 8.8327 -1.6543 5.8442 25 1 9.1631 -0.2066 5.8677 26 1 9.4476 -2.3210 7.0201 27 1 9.3617 -2.2625 4.5970 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 2.2491 -1.6316 -1.1527 32 1 2.6096 0.8730 -5.0667 33 1 3.5389 -1.0731 -6.6744 34 1 3.7222 -3.2538 -5.2306 35 1 1.1493 0.5387 2.5435 36 1 4.4475 -1.2680 2.8327 37 1 4.3017 0.2417 3.7643 38 1 4.3044 -1.0611 5.8745 39 1 4.4501 -2.5704 4.9424 40 1 6.9815 -2.9148 7.5947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776122427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:39 Heat of formation + Delta-G solvation = -163.324411 kcal Electronic energy + Delta-G solvation = -27483.126058 eV Core-core repulsion = 23197.879058 eV Total energy + Delta-G solvation = -4285.247001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.65536 -41.85403 -40.34674 -38.33505 -37.26096 -36.41179 -35.98744 -35.81207 -34.05491 -33.19390 -32.35612 -30.39422 -27.66757 -26.35832 -24.60139 -23.65018 -22.76684 -22.27143 -21.44419 -20.85538 -20.17353 -19.36818 -18.63637 -18.28805 -17.61913 -17.37126 -17.29543 -17.19131 -16.64709 -16.57050 -16.44025 -15.88604 -15.62356 -15.22538 -14.97514 -14.50022 -14.24543 -13.97364 -13.96133 -13.87452 -13.77795 -13.55549 -13.41696 -13.37425 -13.27614 -12.94491 -12.86345 -12.83056 -12.37022 -12.26452 -12.09490 -11.78370 -11.61613 -11.47303 -11.10568 -11.04799 -10.65913 -10.53384 -9.68182 -8.28515 -6.42494 -1.06358 -0.01263 0.76385 1.22504 1.39521 1.41978 1.42992 1.51207 1.65385 2.02513 2.07855 2.35784 2.53179 2.78851 3.04960 3.12244 3.63575 3.72805 3.84503 3.95955 3.96608 3.99574 4.02851 4.11366 4.54429 4.62735 4.67720 4.70640 4.90060 4.95275 5.02693 5.14805 5.21551 5.22604 5.39221 5.53266 5.65242 5.80437 6.02608 6.18525 6.24573 6.69923 6.81261 7.27461 8.83620 Molecular weight = 344.10amu Principal moments of inertia in cm(-1) A = 0.011389 B = 0.002781 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2458.018520 B =10066.722309 C =11825.307992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.129 3.871 3 H 0.148 0.852 4 N -0.706 5.706 5 C 0.612 3.388 6 O -0.545 6.545 7 C -0.116 4.116 8 C -0.117 4.117 9 C -0.234 4.234 10 C 0.009 3.991 11 O -0.176 6.176 12 C 0.536 3.464 13 O -0.517 6.517 14 N -1.030 6.030 15 S 2.604 3.396 16 O -0.965 6.965 17 O -0.973 6.973 18 C -0.581 4.581 19 C 0.023 3.977 20 C -0.543 4.543 21 H 0.073 0.927 22 C -0.001 4.001 23 N -0.932 5.932 24 Si 0.974 3.026 25 H -0.261 1.261 26 H -0.282 1.282 27 H -0.266 1.266 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.417 0.583 32 H 0.166 0.834 33 H 0.185 0.815 34 H 0.250 0.750 35 H 0.453 0.547 36 H 0.134 0.866 37 H 0.151 0.849 38 H 0.016 0.984 39 H 0.006 0.994 40 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.863 6.234 -25.116 28.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 H 0.165 0.835 4 N -0.359 5.359 5 C 0.400 3.600 6 O -0.424 6.424 7 C -0.167 4.167 8 C -0.138 4.138 9 C -0.253 4.253 10 C -0.061 4.061 11 O -0.072 6.072 12 C 0.322 3.678 13 O -0.390 6.390 14 N -0.797 5.797 15 S 2.702 3.298 16 O -0.956 6.956 17 O -0.962 6.962 18 C -0.714 4.714 19 C -0.016 4.016 20 C -0.582 4.582 21 H 0.091 0.909 22 C -0.200 4.200 23 N -0.571 5.571 24 Si 0.797 3.203 25 H -0.186 1.186 26 H -0.207 1.207 27 H -0.191 1.191 28 H 0.124 0.876 29 H 0.086 0.914 30 H 0.103 0.897 31 H 0.255 0.745 32 H 0.183 0.817 33 H 0.202 0.798 34 H 0.266 0.734 35 H 0.294 0.706 36 H 0.152 0.848 37 H 0.169 0.831 38 H 0.034 0.966 39 H 0.025 0.975 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.165 5.623 -24.170 27.211 hybrid contribution 1.262 -0.001 0.103 1.266 sum -9.903 5.622 -24.067 26.625 Atomic orbital electron populations 1.22254 0.89756 1.04342 1.05814 1.21105 0.97908 0.98455 0.80599 0.83519 1.45726 1.66612 1.15300 1.08262 1.16585 0.76823 0.85327 0.81239 1.90862 1.52105 1.14926 1.84550 1.21814 1.14103 0.83666 0.97153 1.22286 0.98501 1.02014 0.91009 1.22248 1.07746 0.92175 1.03112 1.25386 0.98188 1.02522 0.79990 1.84099 1.64101 1.25923 1.33043 1.21048 0.77909 0.83249 0.85582 1.90927 1.36282 1.25379 1.86404 1.54812 1.60691 1.43723 1.20510 1.05347 0.78361 0.73515 0.72579 1.93576 1.77481 1.72952 1.51561 1.93556 1.82601 1.35729 1.84363 1.30265 1.20474 1.11833 1.08839 1.18816 0.97444 0.94701 0.90611 1.21451 0.91524 1.35702 1.09486 0.90896 1.26094 1.04831 0.94361 0.94737 1.70082 1.38044 1.36345 1.12648 0.85370 0.77956 0.79066 0.77908 1.18595 1.20709 1.19102 0.87622 0.91362 0.89708 0.74498 0.81673 0.79809 0.73397 0.70567 0.84752 0.83050 0.96571 0.97549 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.03 9.38 71.98 0.68 -1.35 16 2 C 0.13 2.21 2.98 44.24 0.13 2.35 16 3 H 0.15 2.07 7.58 -2.39 -0.02 2.06 16 4 N -0.71 -14.14 4.95 -450.09 -2.23 -16.37 16 5 C 0.61 13.42 7.75 86.44 0.67 14.09 16 6 O -0.54 -13.82 16.53 -4.34 -0.07 -13.89 16 7 C -0.12 -2.31 7.13 24.07 0.17 -2.14 16 8 C -0.12 -1.94 10.62 22.39 0.24 -1.70 16 9 C -0.23 -2.61 10.87 22.07 0.24 -2.37 16 10 C 0.01 0.09 12.08 67.10 0.81 0.90 16 11 O -0.18 -3.13 10.40 -5.01 -0.05 -3.19 16 12 C 0.54 12.43 6.96 87.66 0.61 13.04 16 13 O -0.52 -16.27 13.94 13.34 0.19 -16.09 16 14 N -1.03 -22.05 5.50 -173.53 -0.95 -23.00 16 15 S 2.60 88.91 5.11 -56.49 -0.29 88.62 16 16 O -0.97 -35.91 18.08 -127.65 -2.31 -38.22 16 17 O -0.97 -41.04 17.04 -120.72 -2.06 -43.10 16 18 C -0.58 -22.40 5.82 71.98 0.42 -21.98 16 19 C 0.02 1.22 4.98 29.85 0.15 1.37 16 20 C -0.54 -30.46 9.11 25.60 0.23 -30.22 16 21 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 22 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 23 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 24 Si 0.97 43.61 29.54 68.60 2.03 45.64 16 25 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H 0.11 0.75 7.56 -2.39 -0.02 0.73 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.42 8.63 7.55 -92.71 -0.70 7.93 16 32 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 33 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 34 H 0.25 0.37 8.06 -2.91 -0.02 0.35 16 35 H 0.45 5.33 8.21 -96.75 -0.79 4.54 16 36 H 0.13 5.09 7.19 -2.39 -0.02 5.07 16 37 H 0.15 4.83 8.14 -2.39 -0.02 4.81 16 38 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -85.14 367.85 -1.04 -86.18 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -0.39 Total: 17.49 kcal Atomic # 6 Polarization: -32.45 SS G_CDS: 4.81 Total: -27.64 kcal Atomic # 7 Polarization: -92.90 SS G_CDS: -2.90 Total: -95.80 kcal Atomic # 8 Polarization: -110.18 SS G_CDS: -4.30 Total: -114.48 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: 88.91 SS G_CDS: -0.29 Total: 88.62 kcal Total: -85.14 -1.04 -86.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776122427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.146 kcal (2) G-P(sol) polarization free energy of solvation -85.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds