Wall clock time and date at job start Wed Apr 1 2020 03:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 S 2.05001 * 102.99989 * 2 1 4 4 C 1.81398 * 102.99874 * 85.00163 * 3 2 1 5 5 C 1.52999 * 109.47330 * 69.99936 * 4 3 2 6 6 N 1.46496 * 109.47277 * 180.02562 * 5 4 3 7 7 C 1.34781 * 120.00327 * 179.97438 * 6 5 4 8 8 O 1.21364 * 119.99337 * 0.02562 * 7 6 5 9 9 C 1.49337 * 120.00373 * 179.97438 * 7 6 5 10 10 O 1.21389 * 119.99697 * 0.02562 * 9 7 6 11 11 N 1.34768 * 120.00105 * 179.97438 * 9 7 6 12 12 C 1.39932 * 120.00299 * 179.97438 * 11 9 7 13 13 C 1.40466 * 125.97706 * 0.02562 * 12 11 9 14 14 C 1.35222 * 107.86479 * 179.71737 * 13 12 11 15 15 N 1.34986 * 107.87618 * 0.42340 * 14 13 12 16 16 C 1.46495 * 125.97298 * 179.83859 * 15 14 13 17 17 C 1.50702 * 109.47571 * 124.71954 * 16 15 14 18 18 H 1.08002 * 119.99446 * 359.97438 * 17 16 15 19 19 C 1.37871 * 120.00072 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 179.72119 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46758 * 269.72576 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72423 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72459 * 21 19 17 25 25 N 1.31275 * 125.98291 * 179.97438 * 12 11 9 26 26 H 1.08999 * 109.47099 * 60.00051 * 1 2 3 27 27 H 1.09001 * 109.47072 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47021 * 299.99668 * 1 2 3 29 29 H 1.09005 * 109.47039 * 309.99759 * 4 3 2 30 30 H 1.08998 * 109.47128 * 190.00180 * 4 3 2 31 31 H 1.08996 * 109.47125 * 60.00092 * 5 4 3 32 32 H 1.09006 * 109.46662 * 299.99875 * 5 4 3 33 33 H 0.97003 * 119.99851 * 0.02562 * 6 5 4 34 34 H 0.97003 * 120.00090 * 0.02562 * 11 9 7 35 35 H 1.07996 * 126.06883 * 359.97438 * 13 12 11 36 36 H 1.07998 * 126.06003 * 180.26767 * 14 13 12 37 37 H 1.09000 * 109.47378 * 4.71613 * 16 15 14 38 38 H 1.09001 * 109.47153 * 244.71734 * 16 15 14 39 39 H 0.96999 * 120.00128 * 180.27192 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 16 2.2752 1.9975 0.0000 4 6 2.2169 2.4297 1.7608 5 6 3.3987 1.7812 2.4845 6 7 3.3513 2.1298 3.9066 7 6 4.2988 1.6668 4.7460 8 8 5.1915 0.9615 4.3234 9 6 4.2508 2.0226 6.1956 10 8 3.3581 2.7284 6.6180 11 7 5.1979 1.5592 7.0349 12 6 5.1533 1.8930 8.3931 13 6 4.1833 2.6973 9.0137 14 6 4.4877 2.7740 10.3289 15 7 5.6117 2.0559 10.5367 16 6 6.2921 1.8750 11.8213 17 6 6.4395 0.4030 12.1089 18 1 6.0634 -0.3249 11.4053 19 6 7.0533 -0.0143 13.2708 20 7 7.1770 -1.2989 13.5243 21 14 7.7032 1.2447 14.4882 22 1 9.1146 1.5685 14.1593 23 1 6.8810 2.4789 14.4101 24 1 7.6305 0.6876 15.8627 25 7 6.0101 1.5085 9.3104 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.2837 2.0684 2.1929 30 1 2.2732 3.5126 1.8711 31 1 4.3319 2.1424 2.0525 32 1 3.3424 0.6982 2.3741 33 1 2.6375 2.6932 4.2443 34 1 5.9111 0.9949 6.6973 35 1 3.3412 3.1672 8.5275 36 1 3.9318 3.3161 11.0796 37 1 5.7057 2.3428 12.6122 38 1 7.2783 2.3372 11.7784 39 1 7.6054 -1.5925 14.3435 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793079638.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:12 Heat of formation + Delta-G solvation = 2.639168 kcal Electronic energy + Delta-G solvation = -23710.167402 eV Core-core repulsion = 19907.162745 eV Total energy + Delta-G solvation = -3803.004658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 344.076 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.47101 -41.54539 -39.75484 -37.08280 -36.19402 -35.20321 -33.14483 -32.05612 -31.05819 -29.89703 -29.23871 -26.88472 -24.65168 -23.84943 -22.63963 -21.84958 -21.12399 -20.09736 -19.56434 -19.12059 -18.28449 -17.90182 -17.39116 -17.05373 -16.80459 -16.48765 -16.41760 -16.13947 -15.56953 -15.33951 -15.06714 -14.88100 -14.82531 -14.46024 -14.40985 -14.01898 -13.90702 -13.84021 -13.33298 -13.12538 -13.02776 -12.83273 -12.69188 -12.56734 -12.21289 -11.82737 -11.72566 -11.48490 -11.33073 -10.87868 -10.84708 -10.47444 -9.85098 -9.42574 -9.25841 -9.21246 -8.37195 -6.48073 -1.72006 0.01530 0.48935 0.92011 1.10757 1.14212 1.37098 1.40691 1.49358 1.72405 1.85821 2.24088 2.29399 2.59353 2.95597 3.23385 3.45810 3.77322 3.87109 4.17494 4.21734 4.27453 4.30743 4.56027 4.57416 4.65990 4.69368 4.81531 4.83982 4.84660 4.94150 4.98160 5.23917 5.74479 5.75644 5.98371 6.09963 6.38314 6.52537 6.58163 6.74665 6.93027 7.14912 8.79872 Molecular weight = 344.08amu Principal moments of inertia in cm(-1) A = 0.029782 B = 0.001626 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.933356 B =17212.025788 C =17574.602862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.190 6.190 3 S -0.132 6.132 4 C -0.109 4.109 5 C 0.121 3.879 6 N -0.678 5.678 7 C 0.524 3.476 8 O -0.536 6.536 9 C 0.520 3.480 10 O -0.504 6.504 11 N -0.603 5.603 12 C 0.258 3.742 13 C -0.287 4.287 14 C 0.065 3.935 15 N -0.340 5.340 16 C 0.238 3.762 17 C -0.549 4.549 18 H 0.025 0.975 19 C 0.013 3.987 20 N -0.943 5.943 21 Si 0.957 3.043 22 H -0.267 1.267 23 H -0.226 1.226 24 H -0.279 1.279 25 N -0.345 5.345 26 H 0.097 0.903 27 H 0.123 0.877 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.148 0.852 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.426 0.574 34 H 0.427 0.573 35 H 0.179 0.821 36 H 0.217 0.783 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.227 12.318 -25.451 32.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S -0.072 6.072 3 S -0.013 6.013 4 C -0.263 4.263 5 C -0.004 4.004 6 N -0.333 5.333 7 C 0.303 3.697 8 O -0.412 6.412 9 C 0.300 3.700 10 O -0.377 6.377 11 N -0.252 5.252 12 C 0.003 3.997 13 C -0.318 4.318 14 C -0.083 4.083 15 N -0.122 5.122 16 C 0.118 3.882 17 C -0.587 4.587 18 H 0.044 0.956 19 C -0.186 4.186 20 N -0.581 5.581 21 Si 0.778 3.222 22 H -0.192 1.192 23 H -0.148 1.148 24 H -0.204 1.204 25 N -0.176 5.176 26 H 0.116 0.884 27 H 0.141 0.859 28 H 0.115 0.885 29 H 0.135 0.865 30 H 0.166 0.834 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.265 0.735 34 H 0.265 0.735 35 H 0.196 0.804 36 H 0.233 0.767 37 H 0.106 0.894 38 H 0.063 0.937 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.150 11.284 -25.996 31.676 hybrid contribution -1.025 0.087 1.418 1.752 sum -15.175 11.370 -24.578 31.042 Atomic orbital electron populations 1.24101 0.90537 1.08150 1.07045 1.89790 1.14199 1.08193 1.94973 1.89583 1.88952 1.10981 1.11743 1.24223 1.01541 1.06945 0.93582 1.21921 0.99465 1.00945 0.78097 1.45598 1.28169 1.51186 1.08349 1.19484 0.83171 0.81151 0.85886 1.90826 1.35587 1.37151 1.77673 1.20251 0.81625 0.80681 0.87399 1.90681 1.34023 1.35582 1.77415 1.42145 1.29375 1.50013 1.03675 1.19381 0.96594 0.98822 0.84868 1.21805 1.05647 1.11267 0.93061 1.23345 0.89354 0.96893 0.98689 1.48582 1.20879 1.36357 1.06376 1.19948 0.94294 0.96740 0.77195 1.21246 1.40247 0.91151 1.06064 0.95648 1.25954 0.94947 0.97871 0.99815 1.70057 1.44197 1.16895 1.27001 0.85600 0.79818 0.79570 0.77251 1.19242 1.14832 1.20423 1.77390 1.25009 1.24335 0.90828 0.88447 0.85861 0.88523 0.86457 0.83434 0.89820 0.90867 0.73487 0.73508 0.80373 0.76686 0.89423 0.93657 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.76 113.37 1.22 0.53 16 2 S -0.19 -2.44 22.43 -20.03 -0.45 -2.89 16 3 S -0.13 -1.48 22.25 -20.03 -0.45 -1.93 16 4 C -0.11 -0.70 6.06 71.98 0.44 -0.27 16 5 C 0.12 1.49 5.63 86.38 0.49 1.97 16 6 N -0.68 -9.73 5.55 -464.52 -2.58 -12.30 16 7 C 0.52 11.85 7.89 87.23 0.69 12.54 16 8 O -0.54 -15.09 16.48 -3.29 -0.05 -15.14 16 9 C 0.52 13.95 7.85 87.24 0.69 14.64 16 10 O -0.50 -13.88 13.60 -3.37 -0.05 -13.92 16 11 N -0.60 -19.29 5.43 -308.90 -1.68 -20.97 16 12 C 0.26 10.00 8.10 133.40 1.08 11.08 16 13 C -0.29 -9.96 9.60 22.12 0.21 -9.74 16 14 C 0.07 2.22 11.43 83.51 0.95 3.18 16 15 N -0.34 -14.74 3.67 -351.85 -1.29 -16.03 16 16 C 0.24 10.72 5.33 85.63 0.46 11.18 16 17 C -0.55 -31.46 9.79 25.60 0.25 -31.21 16 18 H 0.03 1.71 8.06 -2.91 -0.02 1.68 16 19 C 0.01 0.73 5.47 84.65 0.46 1.19 16 20 N -0.94 -58.15 13.96 21.45 0.30 -57.85 16 21 Si 0.96 40.23 27.47 68.60 1.88 42.12 16 22 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 23 H -0.23 -8.03 6.54 99.48 0.65 -7.38 16 24 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 25 N -0.34 -15.93 12.42 -54.53 -0.68 -16.61 16 26 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.12 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.15 7.74 -2.38 -0.02 1.13 16 33 H 0.43 4.23 7.94 -92.71 -0.74 3.49 16 34 H 0.43 13.07 8.29 -92.71 -0.77 12.30 16 35 H 0.18 5.54 5.91 -2.91 -0.02 5.52 16 36 H 0.22 5.10 8.06 -2.91 -0.02 5.08 16 37 H 0.09 3.37 7.12 -2.39 -0.02 3.35 16 38 H 0.05 1.98 7.57 -2.39 -0.02 1.96 16 39 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -78.24 369.77 1.45 -76.79 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.45 Total: 23.64 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: 6.93 Total: 15.09 kcal Atomic # 7 Polarization: -117.84 SS G_CDS: -5.92 Total: -123.76 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.10 Total: -29.06 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 1.88 Total: 42.12 kcal Atomic # 16 Polarization: -3.92 SS G_CDS: -0.90 Total: -4.81 kcal Total: -78.24 1.45 -76.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793079638.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.427 kcal (2) G-P(sol) polarization free energy of solvation -78.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds